CmaCh17G013930 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G013930
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	40S ribosomal protein S27
Location	Cma_Chr17 : 9266917 .. 9268106 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGTTATACCCTCTGCGAGTGCGTAGCCCTAGGCATGTCAAAAGTTAAAGGCTGAGATTTGTTTCTAAACAAATCCAACGGTGTTCACAGTTTCCAGCCGCTCCTTTATATTCATCCAAGACGGCGCTCTTCTCCTGTTTCCTTGCATTCATCCTACCGCCCTGTGTCTCTCGCGAACTCCCGTTGGGATTTTAGGGTTCGCGATCCAGACGGTTGCTTCTTGATCATCATGGTAAACTCCAAATTTCCCTGCTACATCTGGATTATGCCTCTTCATCTCTTCCGAATTCGGATCCTATAATTTTCACTTTCTTTCACGCTATTGACAGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCCGAACTCGAGAAGAGAAAACACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGTATGTCGATTCGTGTTCCTCCTTTTGACTTTTTTATTTTTTATTTTTTAATCAAATCGTTACTATGATAATGGTGATCGAGCTGTTCTGTTAATTCTGAATGCAGGACGTGAAGTGTCAGGGTTGCTTTAACATGTAAGTATTCATCTTTTTCATGTATTATGGTTACATGTACTTTGTGTTTTCCCTTAAGGGTTGGATATTTAGGTTGTTTATTGAGTGATGACATATAACTCTTTGAATGGAAAACAGAACGACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAAGTCCTTGTCTCAGAATTGGCTTGCAGTAGGATCAGGATGGGTGGGTTTGAATTTTGATATTGCAATTGAGCACATTTTGTCTTTGTCTCGGGTTTTCTTCGTTATGGATGTTGATTATTCAATTTTGTTTGAGAAGAAGAGCATTTAGGCACCGTTGTTGTAGTACATTGATCTTAATGTTATCCATGAAACTAAGTTTTGTTTGAAGGAATTCACATCAAGTGTTTTTGCGAGCTCCCCAATTCCTTTTAATTGATCGGTGTGTTTAGATTTGCTTGCCTTTATGCCATGAGTTATAAATTTGTATCGTATTTTTAGCTGCTTTTAATCTTTGAAGTATTAACTTGTTCTTTCTCGAATAGTTTGTCAATTGTA

mRNA sequence

ATGGACGGTTATACCCTCTGCGATTTCCAGCCGCTCCTTTATATTCATCCAAGACGGCGCTCTTCTCCTGTTTCCTTGCATTCATCCTACCGCCCTGTGTCTCTCGCGAACTCCCGTTGGGATTTTAGGGTTCGCGATCCAGACGGTTGCTTCTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCCGAACTCGAGAAGAGAAAACACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGTCAGGGTTGCTTTAACATAACGACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAAGTCCTTGTCTCAGAATTGGCTTGCAGTAGGATCAGGATGGGTGGGTTTGAATTTTGATATTGCAATTGAGCACATTTTGTCTTTGTCTCGGGTTTTCTTCGTTATGGATGTTGATTATTCAATTTTGTTTGAGAAGAAGAGCATTTAGGCACCGTTGTTGTAGTACATTGATCTTAATGTTATCCATGAAACTAAGTTTTGTTTGAAGGAATTCACATCAAGTGTTTTTGCGAGCTCCCCAATTCCTTTTAATTGATCGGTGTGTTTAGATTTGCTTGCCTTTATGCCATGAGTTATAAATTTGTATCGTATTTTTAGCTGCTTTTAATCTTTGAAGTATTAACTTGTTCTTTCTCGAATAGTTTGTCAATTGTA

Coding sequence (CDS)

ATGGACGGTTATACCCTCTGCGATTTCCAGCCGCTCCTTTATATTCATCCAAGACGGCGCTCTTCTCCTGTTTCCTTGCATTCATCCTACCGCCCTGTGTCTCTCGCGAACTCCCGTTGGGATTTTAGGGTTCGCGATCCAGACGGTTGCTTCTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCCGAACTCGAGAAGAGAAAACACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGTGAAGTGTCAGGGTTGCTTTAACATAACGACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTAGGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAA

Protein sequence

MDGYTLCDFQPLLYIHPRRRSSPVSLHSSYRPVSLANSRWDFRVRDPDGCFLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

Homology

[Close]

BLAST of CmaCh17G013930 vs. Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-44
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 55  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 114
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 115 CQTVLCQPTGGRARLTEGCSFRRKGD 141
           CQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of CmaCh17G013930 vs. Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 171.0 bits (432), Expect = 9.1e-42
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 55  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 114
           MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1   MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 115 CQTVLCQPTGGRARLTEGCSFRRKGD 141
           CQTVLCQPTGG+ARLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of CmaCh17G013930 vs. Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-41
Identity = 78/84 (92.86%), Postives = 83/84 (98.81%), Query Frame = 1


Query: 55  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 114
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 115 CQTVLCQPTGGRARLTEGCSFRRK 139
           CQT+LC PTGG+A+LTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of CmaCh17G013930 vs. Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 2.7e-41
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 1


Query: 55  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 114
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 115 CQTVLCQPTGGRARLTEGCSFRRK 139
           CQTVLCQPTGG+ARL EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of CmaCh17G013930 vs. Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.2e-37
Identity = 73/86 (84.88%), Postives = 77/86 (89.53%), Query Frame = 1


Query: 55  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 114
           MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1   MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 115 CQTVLCQPTGGRARLTEGCSFRRKGD 141
           C +VLC PTG   RLTEGCSFRRK D
Sbjct: 61  CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of CmaCh17G013930 vs. TrEMBL
Match: A0A0A0K9G0_CUCSA (40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_6G091290 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.2e-54
Identity = 113/146 (77.40%), Postives = 120/146 (82.19%), Query Frame = 1


Query: 1   MDGYTLCDFQ--PLLYIHPRRRSSPVSLHSSYRPVSLANSR----WDFRVRDPDGCFLII 60
           MDGYTLC  +  PLLYIHPRRRSSP+S  SS+R   + +        F +       LII
Sbjct: 1   MDGYTLCLMEGCPLLYIHPRRRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAP-LPLII 60

Query: 61  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 120
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 61  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 120

Query: 121 CQTVLCQPTGGRARLTEGCSFRRKGD 141
           CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 121 CQTVLCQPTGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of CmaCh17G013930 vs. TrEMBL
Match: W9RJV2_9ROSA (40S ribosomal protein S27 OS=Morus notabilis GN=L484_005973 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 8.9e-44
Identity = 95/132 (71.97%), Postives = 101/132 (76.52%), Query Frame = 1


Query: 17  PRRRSSPVSLHSSYRPVSLANS--RWDFRVRDPDGCFLIIM------VLQNDIDLLNPPA 76
           PRRR +  S HS+ R  +  ++   W      P     I        VLQNDIDLLNPPA
Sbjct: 74  PRRRLTSASQHSAARRTTTPSTGEHWACGGSPPHSSPTIFRERKNENVLQNDIDLLNPPA 133

Query: 77  ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR 136
           ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR
Sbjct: 134 ELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR 193

Query: 137 LTEGCSFRRKGD 141
           LTEGCSFRRKGD
Sbjct: 194 LTEGCSFRRKGD 205

[Close]

BLAST of CmaCh17G013930 vs. TrEMBL
Match: A0A067JH67_JATCU (40S ribosomal protein S27 OS=Jatropha curcas GN=JCGZ_23079 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.4e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 55  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 114
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 115 CQTVLCQPTGGRARLTEGCSFRRKGD 141
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of CmaCh17G013930 vs. TrEMBL
Match: A0A059CAJ6_EUCGR (40S ribosomal protein S27 OS=Eucalyptus grandis GN=EUGRSUZ_E03676 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.4e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 55  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 114
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 115 CQTVLCQPTGGRARLTEGCSFRRKGD 141
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of CmaCh17G013930 vs. TrEMBL
Match: B9RG16_RICCO (40S ribosomal protein S27 OS=Ricinus communis GN=RCOM_1300070 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.4e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 55  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 114
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 115 CQTVLCQPTGGRARLTEGCSFRRKGD 141
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of CmaCh17G013930 vs. TAIR10
Match: AT3G61110.1 (AT3G61110.1 ribosomal protein S27)

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-45
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 55  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 114
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 115 CQTVLCQPTGGRARLTEGCSFRRKGD 141
           CQT+LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of CmaCh17G013930 vs. TAIR10
Match: AT2G45710.1 (AT2G45710.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-42
Identity = 78/84 (92.86%), Postives = 83/84 (98.81%), Query Frame = 1


Query: 55  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 114
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 115 CQTVLCQPTGGRARLTEGCSFRRK 139
           CQT+LC PTGG+A+LTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of CmaCh17G013930 vs. TAIR10
Match: AT5G47930.1 (AT5G47930.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 169.5 bits (428), Expect = 1.5e-42
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 1


Query: 55  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 114
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 115 CQTVLCQPTGGRARLTEGCSFRRK 139
           CQTVLCQPTGG+ARL EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of CmaCh17G013930 vs. TAIR10
Match: AT3G61111.1 (AT3G61111.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 150.6 bits (379), Expect = 7.2e-37
Identity = 70/86 (81.40%), Postives = 76/86 (88.37%), Query Frame = 1


Query: 55  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 114
           MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 115 CQTVLCQPTGGRARLTEGCSFRRKGD 141
           CQ VLCQPTGG+A+LT GCSFR+  D
Sbjct: 61  CQNVLCQPTGGKAKLTVGCSFRKLTD 86

[Close]

BLAST of CmaCh17G013930 vs. NCBI nr
Match: gi|700191201|gb|KGN46405.1| (hypothetical protein Csa_6G091290 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 6.1e-54
Identity = 113/146 (77.40%), Postives = 120/146 (82.19%), Query Frame = 1


Query: 1   MDGYTLCDFQ--PLLYIHPRRRSSPVSLHSSYRPVSLANSR----WDFRVRDPDGCFLII 60
           MDGYTLC  +  PLLYIHPRRRSSP+S  SS+R   + +        F +       LII
Sbjct: 1   MDGYTLCLMEGCPLLYIHPRRRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAP-LPLII 60

Query: 61  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 120
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 61  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 120

Query: 121 CQTVLCQPTGGRARLTEGCSFRRKGD 141
           CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 121 CQTVLCQPTGGRAKLTEGCSFRRKGD 145

[Close]

BLAST of CmaCh17G013930 vs. NCBI nr
Match: gi|703123838|ref|XP_010102910.1| (40S ribosomal protein S27-2 [Morus notabilis])

HSP 1 Score: 184.5 bits (467), Expect = 1.3e-43
Identity = 95/132 (71.97%), Postives = 101/132 (76.52%), Query Frame = 1


Query: 17  PRRRSSPVSLHSSYRPVSLANS--RWDFRVRDPDGCFLIIM------VLQNDIDLLNPPA 76
           PRRR +  S HS+ R  +  ++   W      P     I        VLQNDIDLLNPPA
Sbjct: 74  PRRRLTSASQHSAARRTTTPSTGEHWACGGSPPHSSPTIFRERKNENVLQNDIDLLNPPA 133

Query: 77  ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR 136
           ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR
Sbjct: 134 ELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAR 193

Query: 137 LTEGCSFRRKGD 141
           LTEGCSFRRKGD
Sbjct: 194 LTEGCSFRRKGD 205

[Close]

BLAST of CmaCh17G013930 vs. NCBI nr
Match: gi|255543244|ref|XP_002512685.1| (PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis])

HSP 1 Score: 182.6 bits (462), Expect = 4.8e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 55  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 114
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 115 CQTVLCQPTGGRARLTEGCSFRRKGD 141
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of CmaCh17G013930 vs. NCBI nr
Match: gi|1009143419|ref|XP_015889256.1| (PREDICTED: 40S ribosomal protein S27-2 [Ziziphus jujuba])

HSP 1 Score: 181.8 bits (460), Expect = 8.3e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 55  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 114
           MVLQNDIDLLNPPAE+EKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAEIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 115 CQTVLCQPTGGRARLTEGCSFRRKGD 141
           CQTVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of CmaCh17G013930 vs. NCBI nr
Match: gi|351723661|ref|NP_001236263.1| (uncharacterized protein LOC100499804 [Glycine max])

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 55  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 114
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 115 CQTVLCQPTGGRARLTEGCSFRRKGD 141
           CQTVLCQPTGGRARLTEGCSFR+KGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRKKGD 86

The following BLAST results are available for this feature:

BLAST of CmaCh17G013930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS272_ARATH	2.0e-44	96.51	40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2	[more]
RS27_HORVU	9.1e-42	94.19	40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2	[more]
RS271_ARATH	2.0e-41	92.86	40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1	[more]
RS273_ARATH	2.7e-41	94.05	40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2	[more]
RS27_CHLRE	5.2e-37	84.88	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1	[more]

BLAST of CmaCh17G013930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9G0_CUCSA	4.2e-54	77.40	40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_6G091290 PE=3 SV=1	[more]
W9RJV2_9ROSA	8.9e-44	71.97	40S ribosomal protein S27 OS=Morus notabilis GN=L484_005973 PE=3 SV=1	[more]
A0A067JH67_JATCU	3.4e-43	100.00	40S ribosomal protein S27 OS=Jatropha curcas GN=JCGZ_23079 PE=3 SV=1	[more]
A0A059CAJ6_EUCGR	3.4e-43	100.00	40S ribosomal protein S27 OS=Eucalyptus grandis GN=EUGRSUZ_E03676 PE=3 SV=1	[more]
B9RG16_RICCO	3.4e-43	100.00	40S ribosomal protein S27 OS=Ricinus communis GN=RCOM_1300070 PE=3 SV=1	[more]

BLAST of CmaCh17G013930 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61110.1	1.1e-45	96.51	ribosomal protein S27	[more]
AT2G45710.1	1.1e-42	92.86	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	1.5e-42	94.05	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	7.2e-37	81.40	Zinc-binding ribosomal protein family protein	[more]

BLAST of CmaCh17G013930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191201\|gb\|KGN46405.1\|	6.1e-54	77.40	hypothetical protein Csa_6G091290 [Cucumis sativus]	[more]
gi\|703123838\|ref\|XP_010102910.1\|	1.3e-43	71.97	40S ribosomal protein S27-2 [Morus notabilis]	[more]
gi\|255543244\|ref\|XP_002512685.1\|	4.8e-43	100.00	PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis]	[more]
gi\|1009143419\|ref\|XP_015889256.1\|	8.3e-43	98.84	PREDICTED: 40S ribosomal protein S27-2 [Ziziphus jujuba]	[more]
gi\|351723661\|ref\|NP_001236263.1\|	1.1e-42	98.84	uncharacterized protein LOC100499804 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000592	Ribosomal_S27e
IPR011332	Ribosomal_zn-bd
IPR023407	Ribosomal protein S27e, zinc-binding domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0042545	cell wall modification
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0001510	RNA methylation
biological_process	GO:0000028	ribosomal small subunit assembly
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005618	cell wall
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005622	intracellular
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G013930.1	CmaCh17G013930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27e	PRODOM	PD004466		coord: 100..138 score: 6.0
IPR000592	Ribosomal protein S27e	HAMAP	MF_00371	Ribosomal_S27e	coord: 78..138 score: 16
IPR000592	Ribosomal protein S27e	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 29..140 score: 5.1
IPR000592	Ribosomal protein S27e	PFAM	PF01667	Ribosomal_S27e	coord: 84..138 score: 7.1
IPR000592	Ribosomal protein S27e	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 92..124 scor
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 84..138 score: 3.11
IPR023407	Ribosomal protein S27e, zinc-binding domain	GENE3D	G3DSA:2.20.25.100		coord: 84..138 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G013930	Cucsa.349170	Cucumber (Gy14) v1	cgycmaB0951
CmaCh17G013930	Cla007089	Watermelon (97103) v1	cmawmB352
CmaCh17G013930	Csa6G091290	Cucumber (Chinese Long) v2	cmacuB367
CmaCh17G013930	MELO3C022363	Melon (DHL92) v3.5.1	cmameB315
CmaCh17G013930	ClCG06G001690	Watermelon (Charleston Gray)	cmawcgB322
CmaCh17G013930	CSPI06G07300	Wild cucumber (PI 183967)	cmacpiB371
CmaCh17G013930	CmoCh08G000280	Cucurbita moschata (Rifu)	cmacmoB376
CmaCh17G013930	CmoCh17G013440	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G013930	Lsi09G017730	Bottle gourd (USVL1VR-Ls)	cmalsiB333
CmaCh17G013930	Cp4.1LG12g10080	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G013930	Cp4.1LG17g09510	Cucurbita pepo (Zucchini)	cmacpeB389
CmaCh17G013930	MELO3C022363.2	Melon (DHL92) v3.6.1	cmamedB367
CmaCh17G013930	CsaV3_6G007700	Cucumber (Chinese Long) v3	cmacucB0439
CmaCh17G013930	Cla97C06G110970	Watermelon (97103) v2	cmawmbB369
CmaCh17G013930	Bhi12G002119	Wax gourd	cmawgoB0456
CmaCh17G013930	CsGy6G007310	Cucumber (Gy14) v2	cgybcmaB751
CmaCh17G013930	Carg03803	Silver-seed gourd	carcmaB1351
CmaCh17G013930	Carg11555	Silver-seed gourd	carcmaB0020

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh17G013930	CmaCh08G000260	Cucurbita maxima (Rimu)	cmacmaB384

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G013930	Bottle gourd (USVL1VR-Ls)	cmalsiB359