Cucsa.349170 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.349170
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	40S ribosomal protein S27
Location	scaffold03487 : 472090 .. 472739 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGGCGCTCTTCTCCTCTTTCTTCACCTTCATCGCACCGCTCCGCCTTCGTTCTCTCGCGAACTGTCGTTGGAGTTTTAGGGTTTGCGATCCACACAGCTCCCCTTCCTTTGATCATCATGGTAAACTCCAGATTTCCCTTTTTTCGTTTCGTATTTGGATCCAACTAATTTCAGTTTCTTCTTTCAATCAGGTTCTTCAAAACGACATCGATTTGCTCAACCCCCCCGCCGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGTATGTCAATTAGTGTGAACCCTTTTACCTTTTGTTTAATCTAATATTTTCTTCCATGATGGTGATTGAACTGTTATGTGAATTCCAAATGCAGGACGTGAAATGCCAGGGTTGCTTTAACATGTAAGATTTCGTTTTTTTTCCCATCAATTATGTCTACTTCAGTGTGAATATATGTTTTTTTTTCATAAAATGAATGATGATATAAGATTATTTGAATGATGAACAGAACCACTGTATTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGGGGGCGAGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAA

mRNA sequence

ACGGCGCTCTTCTCCTCTTTCTTCACCTTCATCGCACCGCTCCGCCTTCGTTCTCTCGCGAACTGTCGTTGGAGTTTTAGGGTTTGCGATCCACACAGCTCCCCTTCCTTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAACCCCCCCGCCGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGACGTGAAATGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGGGGGCGAGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAA

Coding sequence (CDS)

ACGGCGCTCTTCTCCTCTTTCTTCACCTTCATCGCACCGCTCCGCCTTCGTTCTCTCGCGAACTGTCGTTGGAGTTTTAGGGTTTGCGATCCACACAGCTCCCCTTCCTTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAACCCCCCCGCCGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGACGTGAAATGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGGGGGCGAGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAA

Protein sequence

RRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD*

Homology

[Close]

BLAST of Cucsa.349170 vs. Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 181.4 bits (459), Expect = 6.1e-45
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 40  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 99
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 100 CQTVLCQPTGGRAKLTEGCSFRRKGD 126
           CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Cucsa.349170 vs. Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.3e-42
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 1


Query: 40  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 99
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 100 CQTVLCQPTGGRAKLTEGCSFRRK 124
           CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Cucsa.349170 vs. Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-41
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 40  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 99
           MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  
Sbjct: 1   MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 100 CQTVLCQPTGGRAKLTEGCSFRRKGD 126
           CQTVLCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of Cucsa.349170 vs. Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 4.1e-41
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 1


Query: 40  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 99
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 100 CQTVLCQPTGGRAKLTEGCSFRRK 124
           CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Cucsa.349170 vs. Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.0e-37
Identity = 72/86 (83.72%), Postives = 77/86 (89.53%), Query Frame = 1


Query: 40  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 99
           MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+
Sbjct: 1   MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 100 CQTVLCQPTGGRAKLTEGCSFRRKGD 126
           C +VLC PTG   +LTEGCSFRRK D
Sbjct: 61  CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of Cucsa.349170 vs. TrEMBL
Match: A0A0A0K9G0_CUCSA (40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_6G091290 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   RRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLPLIIMVLQNDIDLLNPPAELEKRKH 60
           RRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLPLIIMVLQNDIDLLNPPAELEKRKH
Sbjct: 21  RRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLPLIIMVLQNDIDLLNPPAELEKRKH 80

Query: 61  KLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSF 120
           KLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSF
Sbjct: 81  KLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSF 140

Query: 121 RRKGD 126
           RRKGD
Sbjct: 141 RRKGD 145

[Close]

BLAST of Cucsa.349170 vs. TrEMBL
Match: B9GZ08_POPTR (40S ribosomal protein S27 (Fragment) OS=Populus trichocarpa GN=POPTR_0003s15960g PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.6e-44
Identity = 95/122 (77.87%), Postives = 101/122 (82.79%), Query Frame = 1


Query: 6   LSSPSSHRSAFVLSRTVVGVLGFAIHTAP--LPLIIMVLQNDIDLLNPPAELEKRKHKLK 65
           LS P++  S F L  + V  LGF I      +  I MVLQNDIDLLNPPAELEKRKHKLK
Sbjct: 4   LSQPATSPSPFFLVLSEVFRLGFRIPAKEKLVSRIKMVLQNDIDLLNPPAELEKRKHKLK 63

Query: 66  RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK 125
           RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFR+K
Sbjct: 64  RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRKK 123

[Close]

BLAST of Cucsa.349170 vs. TrEMBL
Match: M0SFS6_MUSAM (40S ribosomal protein S27 OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 8.0e-44
Identity = 93/122 (76.23%), Postives = 98/122 (80.33%), Query Frame = 1


Query: 4   SPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLPLIIMVLQNDIDLLNPPAELEKRKHKLK 63
           SPL   +S  S   ++  V GV   A   A      MVL ND+DLLNPPAELEKR+HKLK
Sbjct: 757 SPLEVLNSEHSESEVASRVPGVYVAAAAAAAQGFDKMVLPNDVDLLNPPAELEKRRHKLK 816

Query: 64  RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK 123
           RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
Sbjct: 817 RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK 876

Query: 124 GD 126
           GD
Sbjct: 877 GD 878

[Close]

BLAST of Cucsa.349170 vs. TrEMBL
Match: E5GB53_CUCME (40S ribosomal protein S27 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.3e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 40  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 99
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 100 CQTVLCQPTGGRAKLTEGCSFRRKGD 126
           CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of Cucsa.349170 vs. TrEMBL
Match: A0A0D2MUG4_GOSRA (40S ribosomal protein S27 OS=Gossypium raimondii GN=B456_004G062400 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.0e-43
Identity = 85/95 (89.47%), Postives = 88/95 (92.63%), Query Frame = 1


Query: 31  HTAPLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSH 90
           H  P     MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSH
Sbjct: 28  HAKPSSTATMVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSH 87

Query: 91  SQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 126
           SQTVVVCGNCQTVLCQPTGGRA+LTEGCSFR+KGD
Sbjct: 88  SQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 122

[Close]

BLAST of Cucsa.349170 vs. TAIR10
Match: AT3G61110.1 (AT3G61110.1 ribosomal protein S27)

HSP 1 Score: 181.4 bits (459), Expect = 3.4e-46
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 40  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 99
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 100 CQTVLCQPTGGRAKLTEGCSFRRKGD 126
           CQT+LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 61  CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Cucsa.349170 vs. TAIR10
Match: AT2G45710.1 (AT2G45710.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 171.4 bits (433), Expect = 3.5e-43
Identity = 79/84 (94.05%), Postives = 83/84 (98.81%), Query Frame = 1


Query: 40  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 99
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 100 CQTVLCQPTGGRAKLTEGCSFRRK 124
           CQT+LC PTGG+AKLTEGCSFR+K
Sbjct: 61  CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Cucsa.349170 vs. TAIR10
Match: AT5G47930.1 (AT5G47930.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 168.7 bits (426), Expect = 2.3e-42
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 1


Query: 40  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 99
           MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 100 CQTVLCQPTGGRAKLTEGCSFRRK 124
           CQTVLCQPTGG+A+L EGCSFR+K
Sbjct: 61  CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Cucsa.349170 vs. TAIR10
Match: AT3G61111.1 (AT3G61111.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 152.1 bits (383), Expect = 2.2e-37
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 1


Query: 40  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 99
           MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG 
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 100 CQTVLCQPTGGRAKLTEGCSFRRKGD 126
           CQ VLCQPTGG+AKLT GCSFR+  D
Sbjct: 61  CQNVLCQPTGGKAKLTVGCSFRKLTD 86

[Close]

BLAST of Cucsa.349170 vs. NCBI nr
Match: gi|700191201|gb|KGN46405.1| (hypothetical protein Csa_6G091290 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 3.1e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   RRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLPLIIMVLQNDIDLLNPPAELEKRKH 60
           RRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLPLIIMVLQNDIDLLNPPAELEKRKH
Sbjct: 21  RRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLPLIIMVLQNDIDLLNPPAELEKRKH 80

Query: 61  KLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSF 120
           KLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSF
Sbjct: 81  KLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSF 140

Query: 121 RRKGD 126
           RRKGD
Sbjct: 141 RRKGD 145

[Close]

BLAST of Cucsa.349170 vs. NCBI nr
Match: gi|566162921|ref|XP_002304634.2| (hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa])

HSP 1 Score: 185.7 bits (470), Expect = 5.1e-44
Identity = 95/122 (77.87%), Postives = 101/122 (82.79%), Query Frame = 1


Query: 6   LSSPSSHRSAFVLSRTVVGVLGFAIHTAP--LPLIIMVLQNDIDLLNPPAELEKRKHKLK 65
           LS P++  S F L  + V  LGF I      +  I MVLQNDIDLLNPPAELEKRKHKLK
Sbjct: 4   LSQPATSPSPFFLVLSEVFRLGFRIPAKEKLVSRIKMVLQNDIDLLNPPAELEKRKHKLK 63

Query: 66  RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK 125
           RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFR+K
Sbjct: 64  RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRKK 123

[Close]

BLAST of Cucsa.349170 vs. NCBI nr
Match: gi|659119940|ref|XP_008459925.1| (PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 3.3e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 40  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 99
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 100 CQTVLCQPTGGRAKLTEGCSFRRKGD 126
           CQTVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of Cucsa.349170 vs. NCBI nr
Match: gi|763755386|gb|KJB22717.1| (hypothetical protein B456_004G062400 [Gossypium raimondii])

HSP 1 Score: 182.6 bits (462), Expect = 4.4e-43
Identity = 85/95 (89.47%), Postives = 88/95 (92.63%), Query Frame = 1


Query: 31  HTAPLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSH 90
           H  P     MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSH
Sbjct: 28  HAKPSSTATMVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSH 87

Query: 91  SQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD 126
           SQTVVVCGNCQTVLCQPTGGRA+LTEGCSFR+KGD
Sbjct: 88  SQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 122

[Close]

BLAST of Cucsa.349170 vs. NCBI nr
Match: gi|255543244|ref|XP_002512685.1| (PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis])

HSP 1 Score: 181.8 bits (460), Expect = 7.4e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 40  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 99
           MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1   MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 100 CQTVLCQPTGGRAKLTEGCSFRRKGD 126
           CQTVLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61  CQTVLCQPTGGRARLTEGCSFRRKGD 86

The following BLAST results are available for this feature:

BLAST of Cucsa.349170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS272_ARATH	6.1e-45	97.67	40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2	[more]
RS271_ARATH	6.3e-42	94.05	40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1	[more]
RS27_HORVU	1.4e-41	93.02	40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2	[more]
RS273_ARATH	4.1e-41	92.86	40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2	[more]
RS27_CHLRE	8.0e-37	83.72	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1	[more]

BLAST of Cucsa.349170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9G0_CUCSA	2.2e-65	100.00	40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_6G091290 PE=3 SV=1	[more]
B9GZ08_POPTR	3.6e-44	77.87	40S ribosomal protein S27 (Fragment) OS=Populus trichocarpa GN=POPTR_0003s15960g...	[more]
M0SFS6_MUSAM	8.0e-44	76.23	40S ribosomal protein S27 OS=Musa acuminata subsp. malaccensis PE=3 SV=1	[more]
E5GB53_CUCME	2.3e-43	100.00	40S ribosomal protein S27 OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0D2MUG4_GOSRA	3.0e-43	89.47	40S ribosomal protein S27 OS=Gossypium raimondii GN=B456_004G062400 PE=3 SV=1	[more]

BLAST of Cucsa.349170 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61110.1	3.4e-46	97.67	ribosomal protein S27	[more]
AT2G45710.1	3.5e-43	94.05	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	2.3e-42	92.86	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	2.2e-37	82.56	Zinc-binding ribosomal protein family protein	[more]

BLAST of Cucsa.349170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191201\|gb\|KGN46405.1\|	3.1e-65	100.00	hypothetical protein Csa_6G091290 [Cucumis sativus]	[more]
gi\|566162921\|ref\|XP_002304634.2\|	5.1e-44	77.87	hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]	[more]
gi\|659119940\|ref\|XP_008459925.1\|	3.3e-43	100.00	PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo]	[more]
gi\|763755386\|gb\|KJB22717.1\|	4.4e-43	89.47	hypothetical protein B456_004G062400 [Gossypium raimondii]	[more]
gi\|255543244\|ref\|XP_002512685.1\|	7.4e-43	98.84	PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000592	Ribosomal_S27e
IPR011332	Ribosomal_zn-bd
IPR023407	Ribosomal protein S27e, zinc-binding domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042545	cell wall modification
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006412	translation
cellular_component	GO:0005618	cell wall
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.349170.1	Cucsa.349170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27e	PRODOM	PD004466		coord: 85..123 score: 8.0
IPR000592	Ribosomal protein S27e	HAMAP	MF_00371	Ribosomal_S27e	coord: 63..123 score: 16
IPR000592	Ribosomal protein S27e	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 20..125 score: 3.0
IPR000592	Ribosomal protein S27e	PFAM	PF01667	Ribosomal_S27e	coord: 69..123 score: 4.7
IPR000592	Ribosomal protein S27e	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 77..109 scor
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 69..123 score: 2.75
IPR023407	Ribosomal protein S27e, zinc-binding domain	GENE3D	G3DSA:2.20.25.100		coord: 69..123 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.349170	Cla007089	Watermelon (97103) v1	cgywmB626
Cucsa.349170	Csa6G091290	Cucumber (Chinese Long) v2	cgycuB490
Cucsa.349170	MELO3C022363	Melon (DHL92) v3.5.1	cgymeB564
Cucsa.349170	ClCG06G001690	Watermelon (Charleston Gray)	cgywcgB595
Cucsa.349170	CSPI06G07300	Wild cucumber (PI 183967)	cgycpiB517
Cucsa.349170	CmaCh17G013930	Cucurbita maxima (Rimu)	cgycmaB0951
Cucsa.349170	CmoCh08G000280	Cucurbita moschata (Rifu)	cgycmoB0955
Cucsa.349170	CmoCh17G013440	Cucurbita moschata (Rifu)	cgycmoB0951
Cucsa.349170	Lsi09G017730	Bottle gourd (USVL1VR-Ls)	cgylsiB562
Cucsa.349170	Cp4.1LG12g10080	Cucurbita pepo (Zucchini)	cgycpeB0907
Cucsa.349170	Cp4.1LG17g09510	Cucurbita pepo (Zucchini)	cgycpeB0911
Cucsa.349170	MELO3C022363.2	Melon (DHL92) v3.6.1	cgymedB565
Cucsa.349170	CsaV3_6G007700	Cucumber (Chinese Long) v3	cgycucB532
Cucsa.349170	Cla97C06G110970	Watermelon (97103) v2	cgywmbB596
Cucsa.349170	Bhi12G002119	Wax gourd	cgywgoB696
Cucsa.349170	Carg11555	Silver-seed gourd	carcgyB0012
Cucsa.349170	Carg03803	Silver-seed gourd	carcgyB1099

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.349170	Cucurbita maxima (Rimu)	cgycmaB0955