Lsi09G008180 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G008180
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionSensitivity to red light reduced protein (SRR1), putative
Locationchr09 : 9402141 .. 9402974 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCGTCGGCAAAAACCCTCGCCATTCCGGATCAGTCAAATAATGGCGACTGGACGGTTGTTTTACCTCGTCGTGGCAGGCAGAGGAAAAATTTTCCGAAGCTCAGGAATCGAGAAGATCAGCGGATTTGGTCTCCAATTGATCAGGCTAATGATACAATCAGAGAATCGAAACTGTTGCAGAAGATGGAAATCTGTATCAAGAAAGTTGAGAGTTCCCAATTTTATCAAACTCTTGTTGACGAGCTTGGAACAATGCCAATCTTAGAATCCCTAAATAAGGTTTTGGCCTCGGAGTCAAAGATGGGGATGGTTATCTATGGCGTAGGAAGCATAGAGAATTATGAAATTCCTCGATTGCAGCTCAGTCTTGCAATATTGTTGAAGAGAAAATTCAGTTGGATTGGAAGTTTGGAGGTGTTTGATCCAATTCTTTCTGCAACTGAATGTCGGTTAATGGAGTCCTTTGGTTGTTCTGTTCTATCAGTTAATGAGCAAGGACGACGATGTGCACAAAAGCCAACATTGTTTTTCATGCCCCATTGTGAGGCAGAGTTGTACAACAATCTTTTACAGGAAAATTGGACGGTGGAGCTGTTGAATCATGTTGTGTTGTTTGGGAATAGCTTTGAGATCTATGAACACTTTGTATCTGAATTCAAGAACTCACCCGTTGTTGATTCGGCAAAGTACATATTGGCCTCTAGAAAGTTCACAAGCGAGATCAAAATCAAGACAGTTTCAGATGATTATTTTGGTGCTTTCCATGATTCAAGTTGGCATTTTTTCAGCCCTGTTTCACCTACGGAGCTGCAATTCACAGATCTTTAA

mRNA sequence

ATGGCAGCGTCGGCAAAAACCCTCGCCATTCCGGATCAGTCAAATAATGGCGACTGGACGGTTGTTTTACCTCGTCGTGGCAGGCAGAGGAAAAATTTTCCGAAGCTCAGGAATCGAGAAGATCAGCGGATTTGGTCTCCAATTGATCAGGCTAATGATACAATCAGAGAATCGAAACTGTTGCAGAAGATGGAAATCTGTATCAAGAAAGTTGAGAGTTCCCAATTTTATCAAACTCTTGTTGACGAGCTTGGAACAATGCCAATCTTAGAATCCCTAAATAAGGTTTTGGCCTCGGAGTCAAAGATGGGGATGGTTATCTATGGCGTAGGAAGCATAGAGAATTATGAAATTCCTCGATTGCAGCTCAGTCTTGCAATATTGTTGAAGAGAAAATTCAGTTGGATTGGAAGTTTGGAGGTGTTTGATCCAATTCTTTCTGCAACTGAATGTCGGTTAATGGAGTCCTTTGGTTGTTCTGTTCTATCAGTTAATGAGCAAGGACGACGATGTGCACAAAAGCCAACATTGTTTTTCATGCCCCATTGTGAGGCAGAGTTGTACAACAATCTTTTACAGGAAAATTGGACGGTGGAGCTGTTGAATCATGTTGTGTTGTTTGGGAATAGCTTTGAGATCTATGAACACTTTGTATCTGAATTCAAGAACTCACCCGTTGTTGATTCGGCAAAGTACATATTGGCCTCTAGAAAGTTCACAAGCGAGATCAAAATCAAGACAGTTTCAGATGATTATTTTGGTGCTTTCCATGATTCAAGTTGGCATTTTTTCAGCCCTGTTTCACCTACGGAGCTGCAATTCACAGATCTTTAA

Coding sequence (CDS)

ATGGCAGCGTCGGCAAAAACCCTCGCCATTCCGGATCAGTCAAATAATGGCGACTGGACGGTTGTTTTACCTCGTCGTGGCAGGCAGAGGAAAAATTTTCCGAAGCTCAGGAATCGAGAAGATCAGCGGATTTGGTCTCCAATTGATCAGGCTAATGATACAATCAGAGAATCGAAACTGTTGCAGAAGATGGAAATCTGTATCAAGAAAGTTGAGAGTTCCCAATTTTATCAAACTCTTGTTGACGAGCTTGGAACAATGCCAATCTTAGAATCCCTAAATAAGGTTTTGGCCTCGGAGTCAAAGATGGGGATGGTTATCTATGGCGTAGGAAGCATAGAGAATTATGAAATTCCTCGATTGCAGCTCAGTCTTGCAATATTGTTGAAGAGAAAATTCAGTTGGATTGGAAGTTTGGAGGTGTTTGATCCAATTCTTTCTGCAACTGAATGTCGGTTAATGGAGTCCTTTGGTTGTTCTGTTCTATCAGTTAATGAGCAAGGACGACGATGTGCACAAAAGCCAACATTGTTTTTCATGCCCCATTGTGAGGCAGAGTTGTACAACAATCTTTTACAGGAAAATTGGACGGTGGAGCTGTTGAATCATGTTGTGTTGTTTGGGAATAGCTTTGAGATCTATGAACACTTTGTATCTGAATTCAAGAACTCACCCGTTGTTGATTCGGCAAAGTACATATTGGCCTCTAGAAAGTTCACAAGCGAGATCAAAATCAAGACAGTTTCAGATGATTATTTTGGTGCTTTCCATGATTCAAGTTGGCATTTTTTCAGCCCTGTTTCACCTACGGAGCTGCAATTCACAGATCTTTAA

Protein sequence

MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNFPKLRNREDQRIWSPIDQANDTIRESKLLQKMEICIKKVESSQFYQTLVDELGTMPILESLNKVLASESKMGMVIYGVGSIENYEIPRLQLSLAILLKRKFSWIGSLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAQKPTLFFMPHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEHFVSEFKNSPVVDSAKYILASRKFTSEIKIKTVSDDYFGAFHDSSWHFFSPVSPTELQFTDL
Homology
[Close]
BLAST of Lsi09G008180 vs. Swiss-Prot
Match: SRR1_ARATH (Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 SV=2)

HSP 1 Score: 284.3 bits (726), Expect = 1.5e-75
Identity = 143/267 (53.56%), Postives = 196/267 (73.41%), Query Frame = 1 

Query: 10  IPDQSNNGDWTVVLP---RRGRQRKNFPKLRNREDQRIWSPIDQANDTIRESKLLQKMEI 69
           + + S++G+W VVLP   R+GR+RK  PK +  E+++ W   D   D  R+++L QKMEI
Sbjct: 5   VKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEI 64

Query: 70  CIKKVESSQFYQTLVDELGTMPILESLNKVLASESKMGMVIYGVGSIENYEIPRLQLSLA 129
            +KK+ESS FY   +++L +  +   +  VL SE+++ MV+YG+GSIE+YE PR QLS+A
Sbjct: 65  SLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIA 124

Query: 130 ILLKRKFSWIG-SLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAQKPTLFFMPHCEA 189
           IL+KR+F W+G ++EVFDP+LSATE   +ES GCSVLSVNEQ RR A KPTLFFMPHCEA
Sbjct: 125 ILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEA 184

Query: 190 ELYNNLLQENWTVELLNHVVLFGNSFEIYEHFVSEFKNSPVVDSAKYILASRKFTSEIKI 249
            LY+NLLQ NW ++ L+ + LFGNSF++YE  VS   ++ V+ + K I+A+++ TSE  I
Sbjct: 185 NLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFAI 244

Query: 250 KTVSDDYFGAFHDSSWHFFSPVSPTEL 273
           +T SDDYF AFHDSSWHFFS    +EL
Sbjct: 245 ETESDDYFAAFHDSSWHFFSSGIDSEL 269

[Close]
BLAST of Lsi09G008180 vs. Swiss-Prot
Match: SRR1L_MOUSE (SRR1-like protein OS=Mus musculus GN=Srrd PE=2 SV=4)

HSP 1 Score: 100.9 bits (250), Expect = 2.3e-20
Identity = 70/212 (33.02%), Postives = 112/212 (52.83%), Query Frame = 1 

Query: 19  WTVVLPRR-----GRQRK--NFPKLRNRED-QRIWSPIDQANDTIRESKL----LQKMEI 78
           W+ V PRR     GR+ +    P+     D + +   + +A + +R S      L+ +  
Sbjct: 9   WSAVAPRRRKRAAGRRPRPGEGPRAEPEADGEAVLRRLREAEEDLRISDFCSSALETITE 68

Query: 79  CIKKVESSQFYQTLVDELGTMPILESL-----NKVLASESKMGMVIYGVGSIENYEIPRL 138
           C++K    +  Q L + LG + +  SL       + +S S +  V YG+G+  +    R+
Sbjct: 69  CLRK--QLEQLQPLTEALGRLHLGSSLPSASQEPLASSASHVKCVCYGLGTFASCPTARI 128

Query: 139 QLSLAILLKRKFSWIGS-LEVFDPILSATECRLMESFGCSVLSVNEQGRRCAQ-KPTLFF 198
           QL+  +L   K     S   V+DP+ S TE  ++ S G +VLS NE+G+R  Q +PT+F+
Sbjct: 129 QLAFMLLFLEKCQVPRSHCWVYDPLFSQTEVSVLTSLGVTVLSENEEGKRSVQGQPTVFY 188

Query: 199 MPHCEAELYNNLLQENWTVELLNHVVLFGNSF 212
           MPHC   LYNNLL  NW+ + L+ V++ GNSF
Sbjct: 189 MPHCGTALYNNLLWSNWSADALSRVLIIGNSF 218

[Close]
BLAST of Lsi09G008180 vs. Swiss-Prot
Match: SRR1L_HUMAN (SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.7e-19
Identity = 64/177 (36.16%), Postives = 96/177 (54.24%), Query Frame = 1 

Query: 106 VIYGVGSIENYEIPRLQLSLAILLKRKFSWIGS-LEVFDPILSATECRLMESFGCSVLSV 165
           V YG+G+     + R QL+  +LL  K     S   V+DP+ S  E  ++ + G +VLS 
Sbjct: 142 VCYGIGNFATCIVARNQLTFLLLLLEKCQIPRSHCWVYDPLFSQLEIEVLNTLGVTVLSE 201

Query: 166 NEQGRRCAQ-KPTLFFMPHCEAELYNNLLQENWTVELLNHVVLFGNSFE-IYEHFVSEF- 225
           NE+G+R  + +PT+F+M HC   LYNNLL  NW+V+ L+ +V+ GNSF+ + E  ++   
Sbjct: 202 NEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSKMVIIGNSFKGLEERLLARIL 261

Query: 226 -KNSPVVDSAKYILASRKFTSEIKIKTVSDDYFGAFHDSSWHFFSPVSPTELQFTDL 278
            KN P      YI    K   E++    S  Y   F+D+S H+F PV   E    D+
Sbjct: 262 QKNYP------YIAKILKGLEELEFPQTS-QYMDIFNDTSVHWF-PVQKLEQLSIDI 310

[Close]
BLAST of Lsi09G008180 vs. TrEMBL
Match: A0A0A0KRU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G457240 PE=4 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 9.4e-138
Identity = 244/277 (88.09%), Postives = 259/277 (93.50%), Query Frame = 1 

Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNFPKLRNREDQRIWSPIDQANDTIRESKL 60
           MAASAKT++IPDQSN+GDWTVVLPRRG+Q+K FPKLR REDQR WSP DQANDTIRESKL
Sbjct: 129 MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 188

Query: 61  LQKMEICIKKVESSQFYQTLVDELGTMPILESLNKVLASESKMGMVIYGVGSIENYEIPR 120
           LQKMEICIKK+E+SQFYQTLV+EL TMP LESLN+VL SESKMGMV+YGVGSIENYE PR
Sbjct: 189 LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 248

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAQKPTLFFM 180
           LQLSLAILLKRKFSWI SLEVFDPILSATECRLMESFGCSVLS NEQGRRCA+KPT+FFM
Sbjct: 249 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 308

Query: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEHFVSEFKNSPVVDSAKYILASRKFT 240
           PHCEAELYNNLLQENW V LLNH+VLFGNSFEIYE FVSEFKNSPVVDS+K+ILASRKF 
Sbjct: 309 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 368

Query: 241 SEIKIKTVSDDYFGAFHDSSWHFFSPVSPTELQFTDL 278
            EIKIKTVSDDYFGAFHDSSW FFSPVSP ELQF DL
Sbjct: 369 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 405

[Close]
BLAST of Lsi09G008180 vs. TrEMBL
Match: B9S4K4_RICCO (Protein SENSITIVITY TO RED LIGHT REDUCED, putative OS=Ricinus communis GN=RCOM_0809580 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.9e-98
Identity = 177/274 (64.60%), Postives = 225/274 (82.12%), Query Frame = 1 

Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNFPKLRN-REDQRIWSPIDQANDTIRESK 60
           M ASAK L + + + NG+WTVVLP RG++ +NF K+R   E Q+ W P D  +D+ R+SK
Sbjct: 1   MDASAKILTVDNHTCNGEWTVVLP-RGKRSRNFSKIRTPEEQQQPWVPADLESDSNRQSK 60

Query: 61  LLQKMEICIKKVESSQFYQTLVDELGTMPILESLNKVLASESKMGMVIYGVGSIENYEIP 120
           L++KM IC+KKVE+SQFYQTL++++ T   L+S +KVL SE KM MVIYG+GSIE+YE P
Sbjct: 61  LIEKMNICMKKVENSQFYQTLLEQIQTPESLDSFHKVLGSELKMQMVIYGIGSIESYETP 120

Query: 121 RLQLSLAILLKRKFSWIGSLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAQKPTLFF 180
           R+QLS+AIL+K++FSWIG +EVFDP+LSATE R++E+ GCSVLSVNE GRRC  +PTLF+
Sbjct: 121 RIQLSVAILMKKEFSWIGDIEVFDPVLSATESRVLEALGCSVLSVNEHGRRCVTRPTLFY 180

Query: 181 MPHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEHFVSEFKNSPVVDSAKYILASRKF 240
           MPHCEAELYNNLLQ NW VELLN + LFGNSFE+Y+ ++SEF+NS +VDS+++I+A R+F
Sbjct: 181 MPHCEAELYNNLLQANWRVELLNRIALFGNSFEVYQ-YLSEFRNSTIVDSSRHIVAVREF 240

Query: 241 TSEIKIKTVSDDYFGAFHDSSWHFFSPVSPTELQ 274
           T E  IKTVSDDYF AFHDSSWHFFSP   TELQ
Sbjct: 241 THEYVIKTVSDDYFAAFHDSSWHFFSPDPKTELQ 272

[Close]
BLAST of Lsi09G008180 vs. TrEMBL
Match: W9R0F4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023959 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 6.1e-97
Identity = 182/278 (65.47%), Postives = 223/278 (80.22%), Query Frame = 1 

Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNFPKLRNREDQR--IWSPIDQANDTIRES 60
           MAASAKTL     S NG+WTVVLPRRGR+R   P  R RE Q+   W+P D   +++RES
Sbjct: 1   MAASAKTLTAKTSSMNGEWTVVLPRRGRKR-TCPITRTREQQQPVSWAPTDFEVNSLRES 60

Query: 61  KLLQKMEICIKKVESSQFYQTLVDELGTMPILESLNKVLASESKMGMVIYGVGSIENYEI 120
           KL QKM+IC+KK+E+SQF+ TL+D++ +  I++  +KVL SE KM MVIYG+GSIE+YE 
Sbjct: 61  KLKQKMQICMKKLETSQFFLTLLDQIRSPEIIQCFHKVLGSELKMQMVIYGIGSIESYEN 120

Query: 121 PRLQLSLAILLKRKFSWIGSLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAQKPTLF 180
           PRLQLSLA+LLK KF WIG +EVFDPILSATE R++E  GCSVLS+NEQGRR  QKPT+ 
Sbjct: 121 PRLQLSLALLLKSKFGWIGDIEVFDPILSATESRVLEFLGCSVLSINEQGRRKVQKPTML 180

Query: 181 FMPHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEHFVSEFKNSPVVDSAKYILASRK 240
           FMPHCEAELY+NLLQENW +E LN++V+FGNSFE YE FVSEFKNS V  SA+++L+++K
Sbjct: 181 FMPHCEAELYDNLLQENWRIEHLNNLVIFGNSFENYEQFVSEFKNSTVA-SARHMLSAQK 240

Query: 241 FTSEIKIKTVSDDYFGAFHDSSWHFFSPVSPTELQFTD 277
           FT E KI+TV DDYFGAFHDSSWHFFSPV    LQ+ +
Sbjct: 241 FTEEFKIQTVLDDYFGAFHDSSWHFFSPVIEPGLQYVN 276

[Close]
BLAST of Lsi09G008180 vs. TrEMBL
Match: M5VQP0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009752mg PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 6.1e-97
Identity = 180/279 (64.52%), Postives = 218/279 (78.14%), Query Frame = 1 

Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNFPKL--RNREDQRIWSPIDQANDTIRES 60
           MAASAKTL     + NGDWTVV  RRGRQR+N PK+  R ++    W+P D   +  RES
Sbjct: 1   MAASAKTLTAESHTLNGDWTVVSSRRGRQRRNPPKITIRVQKQPSHWAPTDLEINFARES 60

Query: 61  KLLQKMEICIKKVESSQFYQTLVDELGTMPILESLNKVLASESKMGMVIYGVGSIENYEI 120
           KL+QKM+IC+KK+E SQF+  L+DE+ T  ++   ++VL+SE KM MVIYG+GSIE+YE 
Sbjct: 61  KLMQKMQICMKKLEMSQFFLNLLDEIQTPEMMNYFHRVLSSELKMKMVIYGIGSIESYES 120

Query: 121 PRLQLSLAILLKRKFSWIGSLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAQKPTLF 180
           PRLQLSLAILLKRKF+WIG +EVFDPILSATE R++E+  C VLS+NEQGRR A+KPT+F
Sbjct: 121 PRLQLSLAILLKRKFNWIGDIEVFDPILSATESRVLEALECCVLSINEQGRRQAEKPTMF 180

Query: 181 FMPHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEHFVSEFKNSPVVDSAKYILASRK 240
           FMPHCEAELY+NLLQ NW   LLN  VLFGNSFE YE  +SE+KNS +VDS ++ILA RK
Sbjct: 181 FMPHCEAELYDNLLQANWEARLLNCTVLFGNSFETYEQHLSEYKNSAIVDSTRHILAVRK 240

Query: 241 FTSEIKIKTVSDDYFGAFHDSSWHFFSPVSPTELQFTDL 278
           FT E +IKT+SD YF AFHDSSWHFF PV  TELQ + L
Sbjct: 241 FTDEFRIKTISDTYFSAFHDSSWHFFRPVLETELQLSYL 279

[Close]
BLAST of Lsi09G008180 vs. TrEMBL
Match: A5B9I4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012927 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 3.4e-95
Identity = 177/269 (65.80%), Postives = 216/269 (80.30%), Query Frame = 1 

Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNFPKLRNRED-QRIWSPIDQANDTIRESK 60
           MAASAKT+ +       DWTVVLP RG+ R+NF K ++ E  Q+ W+P D   D  RESK
Sbjct: 1   MAASAKTITLESSDAISDWTVVLPXRGKXRRNFLKSKHPEQHQQPWAPTDLEMDLHRESK 60

Query: 61  LLQKMEICIKKVESSQFYQTLVDELGTMPILESLNKVLASESKMGMVIYGVGSIENYEIP 120
           L+QK++ICI+K+ +S FY  L+D++ T  +LE+  +VL SE KM MV+YG+GSIE+YE P
Sbjct: 61  LMQKIQICIRKLGNSTFYHVLLDQVQTPHMLEAFLRVLGSELKMQMVVYGIGSIESYEPP 120

Query: 121 RLQLSLAILLKRKFSWIGSLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAQKPTLFF 180
           RLQLSLAILLKRKFSWIG ++VFDPILSATE R++E+ GCSVLSVNEQGRR A KPTLFF
Sbjct: 121 RLQLSLAILLKRKFSWIGDIKVFDPILSATESRVLEALGCSVLSVNEQGRRQASKPTLFF 180

Query: 181 MPHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEHFVSEFKNSPVVDSAKYILASRKF 240
           MPHCEAELY+NLLQENW  E +N++VLFGNSF  YE  VSEF++S +VDS+++ILA RKF
Sbjct: 181 MPHCEAELYDNLLQENWRTERMNNIVLFGNSFGTYEQHVSEFRSSTLVDSSRHILAVRKF 240

Query: 241 TSEIKIKTVSDDYFGAFHDSSWHFFSPVS 269
           T E  IKTVSDDYFGAFHDSSWHFFS V+
Sbjct: 241 TREFAIKTVSDDYFGAFHDSSWHFFSLVA 269

[Close]
BLAST of Lsi09G008180 vs. TAIR10
Match: AT5G59560.1 (AT5G59560.1 sensitivity to red light reduced protein (SRR1))

HSP 1 Score: 284.3 bits (726), Expect = 8.2e-77
Identity = 143/267 (53.56%), Postives = 196/267 (73.41%), Query Frame = 1 

Query: 10  IPDQSNNGDWTVVLP---RRGRQRKNFPKLRNREDQRIWSPIDQANDTIRESKLLQKMEI 69
           + + S++G+W VVLP   R+GR+RK  PK +  E+++ W   D   D  R+++L QKMEI
Sbjct: 5   VKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEI 64

Query: 70  CIKKVESSQFYQTLVDELGTMPILESLNKVLASESKMGMVIYGVGSIENYEIPRLQLSLA 129
            +KK+ESS FY   +++L +  +   +  VL SE+++ MV+YG+GSIE+YE PR QLS+A
Sbjct: 65  SLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIA 124

Query: 130 ILLKRKFSWIG-SLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAQKPTLFFMPHCEA 189
           IL+KR+F W+G ++EVFDP+LSATE   +ES GCSVLSVNEQ RR A KPTLFFMPHCEA
Sbjct: 125 ILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEA 184

Query: 190 ELYNNLLQENWTVELLNHVVLFGNSFEIYEHFVSEFKNSPVVDSAKYILASRKFTSEIKI 249
            LY+NLLQ NW ++ L+ + LFGNSF++YE  VS   ++ V+ + K I+A+++ TSE  I
Sbjct: 185 NLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFAI 244

Query: 250 KTVSDDYFGAFHDSSWHFFSPVSPTEL 273
           +T SDDYF AFHDSSWHFFS    +EL
Sbjct: 245 ETESDDYFAAFHDSSWHFFSSGIDSEL 269

[Close]
BLAST of Lsi09G008180 vs. NCBI nr
Match: gi|659072440|ref|XP_008465606.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis melo])

HSP 1 Score: 504.6 bits (1298), Expect = 1.1e-139
Identity = 246/277 (88.81%), Postives = 263/277 (94.95%), Query Frame = 1 

Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNFPKLRNREDQRIWSPIDQANDTIRESKL 60
           MAASAKT+AIPDQSNNGDWTVVLPRRG+QRKNFPKLRNREDQR WSP DQANDTIRESKL
Sbjct: 1   MAASAKTVAIPDQSNNGDWTVVLPRRGKQRKNFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMEICIKKVESSQFYQTLVDELGTMPILESLNKVLASESKMGMVIYGVGSIENYEIPR 120
           LQKME+CIKK+ESSQFY+TLV+EL T+P LESLN+VL SESKMG+VIYGVGSIENYE PR
Sbjct: 61  LQKMEMCIKKLESSQFYRTLVEELETVPFLESLNRVLDSESKMGVVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAQKPTLFFM 180
           LQLSLAILLKRKFSWI SLEVFDPILSATECRLMESFGCSVLSVNEQGRRCA+KPT+FFM
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAEKPTMFFM 180

Query: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEHFVSEFKNSPVVDSAKYILASRKFT 240
           PHCEAELYNNLLQENW V+LLNH++LFGNSFEIYE FVSEFKNSPVVDS+ +ILASRKF 
Sbjct: 181 PHCEAELYNNLLQENWKVKLLNHIMLFGNSFEIYEQFVSEFKNSPVVDSSNFILASRKFV 240

Query: 241 SEIKIKTVSDDYFGAFHDSSWHFFSPVSPTELQFTDL 278
            EIKIKTVSDDYFGAFHDSSWHFFSPVSP EL+F DL
Sbjct: 241 REIKIKTVSDDYFGAFHDSSWHFFSPVSPLELKFIDL 277

[Close]
BLAST of Lsi09G008180 vs. NCBI nr
Match: gi|449452014|ref|XP_004143755.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis sativus])

HSP 1 Score: 497.7 bits (1280), Expect = 1.3e-137
Identity = 244/277 (88.09%), Postives = 259/277 (93.50%), Query Frame = 1 

Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNFPKLRNREDQRIWSPIDQANDTIRESKL 60
           MAASAKT++IPDQSN+GDWTVVLPRRG+Q+K FPKLR REDQR WSP DQANDTIRESKL
Sbjct: 1   MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMEICIKKVESSQFYQTLVDELGTMPILESLNKVLASESKMGMVIYGVGSIENYEIPR 120
           LQKMEICIKK+E+SQFYQTLV+EL TMP LESLN+VL SESKMGMV+YGVGSIENYE PR
Sbjct: 61  LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAQKPTLFFM 180
           LQLSLAILLKRKFSWI SLEVFDPILSATECRLMESFGCSVLS NEQGRRCA+KPT+FFM
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 180

Query: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEHFVSEFKNSPVVDSAKYILASRKFT 240
           PHCEAELYNNLLQENW V LLNH+VLFGNSFEIYE FVSEFKNSPVVDS+K+ILASRKF 
Sbjct: 181 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 240

Query: 241 SEIKIKTVSDDYFGAFHDSSWHFFSPVSPTELQFTDL 278
            EIKIKTVSDDYFGAFHDSSW FFSPVSP ELQF DL
Sbjct: 241 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 277

[Close]
BLAST of Lsi09G008180 vs. NCBI nr
Match: gi|700195945|gb|KGN51122.1| (hypothetical protein Csa_5G457240 [Cucumis sativus])

HSP 1 Score: 497.7 bits (1280), Expect = 1.3e-137
Identity = 244/277 (88.09%), Postives = 259/277 (93.50%), Query Frame = 1 

Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNFPKLRNREDQRIWSPIDQANDTIRESKL 60
           MAASAKT++IPDQSN+GDWTVVLPRRG+Q+K FPKLR REDQR WSP DQANDTIRESKL
Sbjct: 129 MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 188

Query: 61  LQKMEICIKKVESSQFYQTLVDELGTMPILESLNKVLASESKMGMVIYGVGSIENYEIPR 120
           LQKMEICIKK+E+SQFYQTLV+EL TMP LESLN+VL SESKMGMV+YGVGSIENYE PR
Sbjct: 189 LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 248

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAQKPTLFFM 180
           LQLSLAILLKRKFSWI SLEVFDPILSATECRLMESFGCSVLS NEQGRRCA+KPT+FFM
Sbjct: 249 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 308

Query: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEHFVSEFKNSPVVDSAKYILASRKFT 240
           PHCEAELYNNLLQENW V LLNH+VLFGNSFEIYE FVSEFKNSPVVDS+K+ILASRKF 
Sbjct: 309 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 368

Query: 241 SEIKIKTVSDDYFGAFHDSSWHFFSPVSPTELQFTDL 278
            EIKIKTVSDDYFGAFHDSSW FFSPVSP ELQF DL
Sbjct: 369 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 405

[Close]
BLAST of Lsi09G008180 vs. NCBI nr
Match: gi|255559808|ref|XP_002520923.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Ricinus communis])

HSP 1 Score: 367.1 bits (941), Expect = 2.7e-98
Identity = 177/274 (64.60%), Postives = 225/274 (82.12%), Query Frame = 1 

Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNFPKLRN-REDQRIWSPIDQANDTIRESK 60
           M ASAK L + + + NG+WTVVLP RG++ +NF K+R   E Q+ W P D  +D+ R+SK
Sbjct: 1   MDASAKILTVDNHTCNGEWTVVLP-RGKRSRNFSKIRTPEEQQQPWVPADLESDSNRQSK 60

Query: 61  LLQKMEICIKKVESSQFYQTLVDELGTMPILESLNKVLASESKMGMVIYGVGSIENYEIP 120
           L++KM IC+KKVE+SQFYQTL++++ T   L+S +KVL SE KM MVIYG+GSIE+YE P
Sbjct: 61  LIEKMNICMKKVENSQFYQTLLEQIQTPESLDSFHKVLGSELKMQMVIYGIGSIESYETP 120

Query: 121 RLQLSLAILLKRKFSWIGSLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAQKPTLFF 180
           R+QLS+AIL+K++FSWIG +EVFDP+LSATE R++E+ GCSVLSVNE GRRC  +PTLF+
Sbjct: 121 RIQLSVAILMKKEFSWIGDIEVFDPVLSATESRVLEALGCSVLSVNEHGRRCVTRPTLFY 180

Query: 181 MPHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEHFVSEFKNSPVVDSAKYILASRKF 240
           MPHCEAELYNNLLQ NW VELLN + LFGNSFE+Y+ ++SEF+NS +VDS+++I+A R+F
Sbjct: 181 MPHCEAELYNNLLQANWRVELLNRIALFGNSFEVYQ-YLSEFRNSTIVDSSRHIVAVREF 240

Query: 241 TSEIKIKTVSDDYFGAFHDSSWHFFSPVSPTELQ 274
           T E  IKTVSDDYF AFHDSSWHFFSP   TELQ
Sbjct: 241 THEYVIKTVSDDYFAAFHDSSWHFFSPDPKTELQ 272

[Close]
BLAST of Lsi09G008180 vs. NCBI nr
Match: gi|645270677|ref|XP_008240563.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Prunus mume])

HSP 1 Score: 366.3 bits (939), Expect = 4.7e-98
Identity = 182/279 (65.23%), Postives = 220/279 (78.85%), Query Frame = 1 

Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNFPKL--RNREDQRIWSPIDQANDTIRES 60
           MAASAKTL     + NGDWTVV  RRGRQRKN PK+  R ++    W+P D   +  RES
Sbjct: 1   MAASAKTLTAESHTLNGDWTVVSSRRGRQRKNPPKITIRVQKQPSHWAPTDLEINFARES 60

Query: 61  KLLQKMEICIKKVESSQFYQTLVDELGTMPILESLNKVLASESKMGMVIYGVGSIENYEI 120
           KL+QK++IC+KK+E SQF+  L+DE+ T  ++   ++VL+SE KM MVIYG+GSIE+YE 
Sbjct: 61  KLMQKIQICMKKLEMSQFFLNLLDEIQTPEMMNYFHRVLSSELKMKMVIYGIGSIESYES 120

Query: 121 PRLQLSLAILLKRKFSWIGSLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAQKPTLF 180
           PRLQLSLAILLKRKF+WIG +EVFDPILSATE R++E+  CSVLS+NEQGRR A+KPT+F
Sbjct: 121 PRLQLSLAILLKRKFNWIGDIEVFDPILSATESRVLEALECSVLSINEQGRRQAEKPTMF 180

Query: 181 FMPHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEHFVSEFKNSPVVDSAKYILASRK 240
           FMPHCEAELY+NLLQ NW   LLN  VLFGNSFE YE  +SE+KNS +VDS K+ILA RK
Sbjct: 181 FMPHCEAELYDNLLQANWEARLLNCTVLFGNSFETYEQHLSEYKNSAIVDSTKHILAVRK 240

Query: 241 FTSEIKIKTVSDDYFGAFHDSSWHFFSPVSPTELQFTDL 278
           FT E +IKT+SD YF AFHDSSWHFF PV  TELQ ++L
Sbjct: 241 FTDEFRIKTISDTYFSAFHDSSWHFFRPVLETELQLSNL 279

The following BLAST results are available for this feature:
BLAST of Lsi09G008180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SRR1_ARATH1.5e-7553.56Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 ... [more]
SRR1L_MOUSE2.3e-2033.02SRR1-like protein OS=Mus musculus GN=Srrd PE=2 SV=4[more]
SRR1L_HUMAN5.7e-1936.16SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=1[more]
BLAST of Lsi09G008180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRU2_CUCSA9.4e-13888.09Uncharacterized protein OS=Cucumis sativus GN=Csa_5G457240 PE=4 SV=1[more]
B9S4K4_RICCO1.9e-9864.60Protein SENSITIVITY TO RED LIGHT REDUCED, putative OS=Ricinus communis GN=RCOM_0... [more]
W9R0F4_9ROSA6.1e-9765.47Uncharacterized protein OS=Morus notabilis GN=L484_023959 PE=4 SV=1[more]
M5VQP0_PRUPE6.1e-9764.52Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009752mg PE=4 SV=1[more]
A5B9I4_VITVI3.4e-9565.80Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012927 PE=4 SV=1[more]
BLAST of Lsi09G008180 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G59560.18.2e-7753.56 sensitivity to red light reduced protein (SRR1)[more]
BLAST of Lsi09G008180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072440|ref|XP_008465606.1|1.1e-13988.81PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis melo][more]
gi|449452014|ref|XP_004143755.1|1.3e-13788.09PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis sativus][more]
gi|700195945|gb|KGN51122.1|1.3e-13788.09hypothetical protein Csa_5G457240 [Cucumis sativus][more]
gi|255559808|ref|XP_002520923.1|2.7e-9864.60PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Ricinus communis][more]
gi|645270677|ref|XP_008240563.1|4.7e-9865.23PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012942SRR1-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007623 circadian rhythm
biological_process GO:0010017 red or far-red light signaling pathway
biological_process GO:0009585 red, far-red light phototransduction
biological_process GO:0042752 regulation of circadian rhythm
biological_process GO:0008150 biological_process
cellular_component GO:0044424 intracellular part
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G008180.1Lsi09G008180.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012942Sensitivity To Red Light Reduced-like, SRR1PFAMPF07985SRR1coord: 105..157
score: 6.9
NoneNo IPR availablePANTHERPTHR28626FAMILY NOT NAMEDcoord: 9..266
score: 4.2
NoneNo IPR availablePANTHERPTHR28626:SF3SRR1-LIKE PROTEINcoord: 9..266
score: 4.2