Cp4.1LG01g19230 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g19230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSensitivity to red light reduced protein (SRR1), putative
LocationCp4.1LG01 : 16403008 .. 16403841 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGCGTCGGCAAAAACTCTTGCTATTCCGGATCAGTCGAATAATGGCGACTGGACGGTTGTTTTACCTCGTCGTGGCAGGCAGAGGAAAAATTTGCCGAAGCTAAGAAAACAAGAAGATCAGCGGACTTGGTCTCCGTCTGATCAGGCCAATGATACAATCAGGGAATCGAAACTGTTGCATAAGATGGAAATCTGTATTGAGAAAGTTGAGAGCTCCCAATTTTATCGAACTCTTGTTGATGAGCTTGAAACGATGCCAGTCTTGGAATCCTTGAATAGGGTTTTGGCCTCGGAGTCGAAGATGGGGATGGTTATCTATGGCGTAGGAAGCATTGAAAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCTATATTGTTGAAGAGAAAATTTAGTTGGATTGGAAGGTTAGAAGTGTTCGATCCAATTCTTTCTGCAATCGAATGTCGGGTTATCGAATCCTTTGGTTGTTCTATTCTATCAGTAAATGAGCAAGGACGGCGATGTGCGCAGAAGCCAACAATGTTCTTCATGCCCCATTGCGAGGCAGAGCTGTACAACAATCTTTTACAGGAGAATTGGACGGGGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAGCAGTTTGTATCTGAATTCAAGAACTCACCCGTTGTTGATTCGGCAAAGTACATCTTGGCCTCTAGAAAATTCTCACGCGAGATCAAAATCAAGACACTTTCAGATGAATATTTTGGTGCTTTCCATGATTCAAGTTGGCATTTTTTCAGCACTGTTTTACCGACAGAGCTGCAGTTCACAGATCTTTGA

mRNA sequence

ATGACAGCGTCGGCAAAAACTCTTGCTATTCCGGATCAGTCGAATAATGGCGACTGGACGGTTGTTTTACCTCGTCGTGGCAGGCAGAGGAAAAATTTGCCGAAGCTAAGAAAACAAGAAGATCAGCGGACTTGGTCTCCGTCTGATCAGGCCAATGATACAATCAGGGAATCGAAACTGTTGCATAAGATGGAAATCTGTATTGAGAAAGTTGAGAGCTCCCAATTTTATCGAACTCTTGTTGATGAGCTTGAAACGATGCCAGTCTTGGAATCCTTGAATAGGGTTTTGGCCTCGGAGTCGAAGATGGGGATGGTTATCTATGGCGTAGGAAGCATTGAAAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCTATATTGTTGAAGAGAAAATTTAGTTGGATTGGAAGGTTAGAAGTGTTCGATCCAATTCTTTCTGCAATCGAATGTCGGGTTATCGAATCCTTTGGTTGTTCTATTCTATCAGTAAATGAGCAAGGACGGCGATGTGCGCAGAAGCCAACAATGTTCTTCATGCCCCATTGCGAGGCAGAGCTGTACAACAATCTTTTACAGGAGAATTGGACGGGGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAGCAGTTTGTATCTGAATTCAAGAACTCACCCGTTGTTGATTCGGCAAAGTACATCTTGGCCTCTAGAAAATTCTCACGCGAGATCAAAATCAAGACACTTTCAGATGAATATTTTGGTGCTTTCCATGATTCAAGTTGGCATTTTTTCAGCACTGTTTTACCGACAGAGCTGCAGTTCACAGATCTTTGA

Coding sequence (CDS)

ATGACAGCGTCGGCAAAAACTCTTGCTATTCCGGATCAGTCGAATAATGGCGACTGGACGGTTGTTTTACCTCGTCGTGGCAGGCAGAGGAAAAATTTGCCGAAGCTAAGAAAACAAGAAGATCAGCGGACTTGGTCTCCGTCTGATCAGGCCAATGATACAATCAGGGAATCGAAACTGTTGCATAAGATGGAAATCTGTATTGAGAAAGTTGAGAGCTCCCAATTTTATCGAACTCTTGTTGATGAGCTTGAAACGATGCCAGTCTTGGAATCCTTGAATAGGGTTTTGGCCTCGGAGTCGAAGATGGGGATGGTTATCTATGGCGTAGGAAGCATTGAAAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCTATATTGTTGAAGAGAAAATTTAGTTGGATTGGAAGGTTAGAAGTGTTCGATCCAATTCTTTCTGCAATCGAATGTCGGGTTATCGAATCCTTTGGTTGTTCTATTCTATCAGTAAATGAGCAAGGACGGCGATGTGCGCAGAAGCCAACAATGTTCTTCATGCCCCATTGCGAGGCAGAGCTGTACAACAATCTTTTACAGGAGAATTGGACGGGGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAGCAGTTTGTATCTGAATTCAAGAACTCACCCGTTGTTGATTCGGCAAAGTACATCTTGGCCTCTAGAAAATTCTCACGCGAGATCAAAATCAAGACACTTTCAGATGAATATTTTGGTGCTTTCCATGATTCAAGTTGGCATTTTTTCAGCACTGTTTTACCGACAGAGCTGCAGTTCACAGATCTTTGA

Protein sequence

MTASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKLLHKMEICIEKVESSQFYRTLVDELETMPVLESLNRVLASESKMGMVIYGVGSIENYENPRLQLSLAILLKRKFSWIGRLEVFDPILSAIECRVIESFGCSILSVNEQGRRCAQKPTMFFMPHCEAELYNNLLQENWTGELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFSREIKIKTLSDEYFGAFHDSSWHFFSTVLPTELQFTDL
Homology
[Close]
BLAST of Cp4.1LG01g19230 vs. Swiss-Prot
Match: SRR1_ARATH (Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 SV=2)

HSP 1 Score: 278.5 bits (711), Expect = 8.0e-74
Identity = 136/267 (50.94%), Postives = 197/267 (73.78%), Query Frame = 1 

Query: 10  IPDQSNNGDWTVVLP---RRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKLLHKMEI 69
           + + S++G+W VVLP   R+GR+RK  PK + +E+++ W   D   D  R+++L  KMEI
Sbjct: 5   VKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEI 64

Query: 70  CIEKVESSQFYRTLVDELETMPVLESLNRVLASESKMGMVIYGVGSIENYENPRLQLSLA 129
            ++K+ESS FY   +++L++  V   +  VL SE+++ MV+YG+GSIE+YE+PR QLS+A
Sbjct: 65  SLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIA 124

Query: 130 ILLKRKFSWIG-RLEVFDPILSAIECRVIESFGCSILSVNEQGRRCAQKPTMFFMPHCEA 189
           IL+KR+F W+G  +EVFDP+LSA E   +ES GCS+LSVNEQ RR A KPT+FFMPHCEA
Sbjct: 125 ILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEA 184

Query: 190 ELYNNLLQENWTGELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFSREIKI 249
            LY+NLLQ NW  + L+ + LFGNSF++YE+ VS   ++ V+ + K I+A+++ + E  I
Sbjct: 185 NLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFAI 244

Query: 250 KTLSDEYFGAFHDSSWHFFSTVLPTEL 273
           +T SD+YF AFHDSSWHFFS+ + +EL
Sbjct: 245 ETESDDYFAAFHDSSWHFFSSGIDSEL 269

[Close]
BLAST of Cp4.1LG01g19230 vs. Swiss-Prot
Match: SRR1L_MOUSE (SRR1-like protein OS=Mus musculus GN=Srrd PE=2 SV=4)

HSP 1 Score: 96.7 bits (239), Expect = 4.3e-19
Identity = 71/223 (31.84%), Postives = 115/223 (51.57%), Query Frame = 1 

Query: 19  WTVVLPRRGRQRKNLPKLRKQEDQRTWSPSD--QANDTIRESKL-LHKMEICIEKVES-S 78
           W+ V PRR R+R    + R  E  R    +D       +RE++  L   + C   +E+ +
Sbjct: 9   WSAVAPRR-RKRAAGRRPRPGEGPRAEPEADGEAVLRRLREAEEDLRISDFCSSALETIT 68

Query: 79  QFYRTLVDELETMPVLESLNRV--------------LASESKMGMVIYGVGSIENYENPR 138
           +  R  +++L+  P+ E+L R+               +S S +  V YG+G+  +    R
Sbjct: 69  ECLRKQLEQLQ--PLTEALGRLHLGSSLPSASQEPLASSASHVKCVCYGLGTFASCPTAR 128

Query: 139 LQLSLAIL------LKRKFSWIGRLEVFDPILSAIECRVIESFGCSILSVNEQGRRCAQ- 198
           +QL+  +L      + R   W     V+DP+ S  E  V+ S G ++LS NE+G+R  Q 
Sbjct: 129 IQLAFMLLFLEKCQVPRSHCW-----VYDPLFSQTEVSVLTSLGVTVLSENEEGKRSVQG 188

Query: 199 KPTMFFMPHCEAELYNNLLQENWTGELLNHVVLFGNSFEIYEQ 217
           +PT+F+MPHC   LYNNLL  NW+ + L+ V++ GNSF   E+
Sbjct: 189 QPTVFYMPHCGTALYNNLLWSNWSADALSRVLIIGNSFRGLEE 223

[Close]
BLAST of Cp4.1LG01g19230 vs. Swiss-Prot
Match: SRR1L_HUMAN (SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-17
Identity = 60/165 (36.36%), Postives = 93/165 (56.36%), Query Frame = 1 

Query: 106 VIYGVGSIENYENPRLQLSLAILLKRKFSWIGRLE--VFDPILSAIECRVIESFGCSILS 165
           V YG+G+       R QL+  +LL  K   I R    V+DP+ S +E  V+ + G ++LS
Sbjct: 142 VCYGIGNFATCIVARNQLTFLLLLLEKCQ-IPRSHCWVYDPLFSQLEIEVLNTLGVTVLS 201

Query: 166 VNEQGRRCAQ-KPTMFFMPHCEAELYNNLLQENWTGELLNHVVLFGNSFE-IYEQFVSEF 225
            NE+G+R  + +PT+F+M HC   LYNNLL  NW+ + L+ +V+ GNSF+ + E+ ++  
Sbjct: 202 ENEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSKMVIIGNSFKGLEERLLARI 261

Query: 226 --KNSPVVDSAKYILASRKFSREIKIKTLSDEYFGAFHDSSWHFF 265
             KN P      YI    K   E++    S +Y   F+D+S H+F
Sbjct: 262 LQKNYP------YIAKILKGLEELEFPQTS-QYMDIFNDTSVHWF 298

[Close]
BLAST of Cp4.1LG01g19230 vs. TrEMBL
Match: A0A0A0KRU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G457240 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 1.8e-133
Identity = 235/277 (84.84%), Postives = 257/277 (92.78%), Query Frame = 1 

Query: 1   MTASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           M ASAKT++IPDQSN+GDWTVVLPRRG+Q+K  PKLR +EDQRTWSP+DQANDTIRESKL
Sbjct: 129 MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 188

Query: 61  LHKMEICIEKVESSQFYRTLVDELETMPVLESLNRVLASESKMGMVIYGVGSIENYENPR 120
           L KMEICI+K+E+SQFY+TLV+ELETMP LESLNRVL SESKMGMV+YGVGSIENYENPR
Sbjct: 189 LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 248

Query: 121 LQLSLAILLKRKFSWIGRLEVFDPILSAIECRVIESFGCSILSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWI  LEVFDPILSA ECR++ESFGCS+LS NEQGRRCA+KPTMFFM
Sbjct: 249 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 308

Query: 181 PHCEAELYNNLLQENWTGELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELYNNLLQENW   LLNH+VLFGNSFEIYEQFVSEFKNSPVVDS+K+ILASRKF 
Sbjct: 309 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 368

Query: 241 REIKIKTLSDEYFGAFHDSSWHFFSTVLPTELQFTDL 278
           REIKIKT+SD+YFGAFHDSSW FFS V P ELQF DL
Sbjct: 369 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 405

[Close]
BLAST of Cp4.1LG01g19230 vs. TrEMBL
Match: M5VQP0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009752mg PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.4e-96
Identity = 179/279 (64.16%), Postives = 219/279 (78.49%), Query Frame = 1 

Query: 1   MTASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKL--RKQEDQRTWSPSDQANDTIRES 60
           M ASAKTL     + NGDWTVV  RRGRQR+N PK+  R Q+    W+P+D   +  RES
Sbjct: 1   MAASAKTLTAESHTLNGDWTVVSSRRGRQRRNPPKITIRVQKQPSHWAPTDLEINFARES 60

Query: 61  KLLHKMEICIEKVESSQFYRTLVDELETMPVLESLNRVLASESKMGMVIYGVGSIENYEN 120
           KL+ KM+IC++K+E SQF+  L+DE++T  ++   +RVL+SE KM MVIYG+GSIE+YE+
Sbjct: 61  KLMQKMQICMKKLEMSQFFLNLLDEIQTPEMMNYFHRVLSSELKMKMVIYGIGSIESYES 120

Query: 121 PRLQLSLAILLKRKFSWIGRLEVFDPILSAIECRVIESFGCSILSVNEQGRRCAQKPTMF 180
           PRLQLSLAILLKRKF+WIG +EVFDPILSA E RV+E+  C +LS+NEQGRR A+KPTMF
Sbjct: 121 PRLQLSLAILLKRKFNWIGDIEVFDPILSATESRVLEALECCVLSINEQGRRQAEKPTMF 180

Query: 181 FMPHCEAELYNNLLQENWTGELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRK 240
           FMPHCEAELY+NLLQ NW   LLN  VLFGNSFE YEQ +SE+KNS +VDS ++ILA RK
Sbjct: 181 FMPHCEAELYDNLLQANWEARLLNCTVLFGNSFETYEQHLSEYKNSAIVDSTRHILAVRK 240

Query: 241 FSREIKIKTLSDEYFGAFHDSSWHFFSTVLPTELQFTDL 278
           F+ E +IKT+SD YF AFHDSSWHFF  VL TELQ + L
Sbjct: 241 FTDEFRIKTISDTYFSAFHDSSWHFFRPVLETELQLSYL 279

[Close]
BLAST of Cp4.1LG01g19230 vs. TrEMBL
Match: W9R0F4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023959 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 4.9e-94
Identity = 172/277 (62.09%), Postives = 223/277 (80.51%), Query Frame = 1 

Query: 1   MTASAKTLAIPDQSNNGDWTVVLPRRGRQRK-NLPKLRKQEDQRTWSPSDQANDTIRESK 60
           M ASAKTL     S NG+WTVVLPRRGR+R   + + R+Q+   +W+P+D   +++RESK
Sbjct: 1   MAASAKTLTAKTSSMNGEWTVVLPRRGRKRTCPITRTREQQQPVSWAPTDFEVNSLRESK 60

Query: 61  LLHKMEICIEKVESSQFYRTLVDELETMPVLESLNRVLASESKMGMVIYGVGSIENYENP 120
           L  KM+IC++K+E+SQF+ TL+D++ +  +++  ++VL SE KM MVIYG+GSIE+YENP
Sbjct: 61  LKQKMQICMKKLETSQFFLTLLDQIRSPEIIQCFHKVLGSELKMQMVIYGIGSIESYENP 120

Query: 121 RLQLSLAILLKRKFSWIGRLEVFDPILSAIECRVIESFGCSILSVNEQGRRCAQKPTMFF 180
           RLQLSLA+LLK KF WIG +EVFDPILSA E RV+E  GCS+LS+NEQGRR  QKPTM F
Sbjct: 121 RLQLSLALLLKSKFGWIGDIEVFDPILSATESRVLEFLGCSVLSINEQGRRKVQKPTMLF 180

Query: 181 MPHCEAELYNNLLQENWTGELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKF 240
           MPHCEAELY+NLLQENW  E LN++V+FGNSFE YEQFVSEFKNS V  SA+++L+++KF
Sbjct: 181 MPHCEAELYDNLLQENWRIEHLNNLVIFGNSFENYEQFVSEFKNSTVA-SARHMLSAQKF 240

Query: 241 SREIKIKTLSDEYFGAFHDSSWHFFSTVLPTELQFTD 277
           + E KI+T+ D+YFGAFHDSSWHFFS V+   LQ+ +
Sbjct: 241 TEEFKIQTVLDDYFGAFHDSSWHFFSPVIEPGLQYVN 276

[Close]
BLAST of Cp4.1LG01g19230 vs. TrEMBL
Match: B9S4K4_RICCO (Protein SENSITIVITY TO RED LIGHT REDUCED, putative OS=Ricinus communis GN=RCOM_0809580 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 1.1e-93
Identity = 167/274 (60.95%), Postives = 223/274 (81.39%), Query Frame = 1 

Query: 1   MTASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLR-KQEDQRTWSPSDQANDTIRESK 60
           M ASAK L + + + NG+WTVVLP RG++ +N  K+R  +E Q+ W P+D  +D+ R+SK
Sbjct: 1   MDASAKILTVDNHTCNGEWTVVLP-RGKRSRNFSKIRTPEEQQQPWVPADLESDSNRQSK 60

Query: 61  LLHKMEICIEKVESSQFYRTLVDELETMPVLESLNRVLASESKMGMVIYGVGSIENYENP 120
           L+ KM IC++KVE+SQFY+TL+++++T   L+S ++VL SE KM MVIYG+GSIE+YE P
Sbjct: 61  LIEKMNICMKKVENSQFYQTLLEQIQTPESLDSFHKVLGSELKMQMVIYGIGSIESYETP 120

Query: 121 RLQLSLAILLKRKFSWIGRLEVFDPILSAIECRVIESFGCSILSVNEQGRRCAQKPTMFF 180
           R+QLS+AIL+K++FSWIG +EVFDP+LSA E RV+E+ GCS+LSVNE GRRC  +PT+F+
Sbjct: 121 RIQLSVAILMKKEFSWIGDIEVFDPVLSATESRVLEALGCSVLSVNEHGRRCVTRPTLFY 180

Query: 181 MPHCEAELYNNLLQENWTGELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKF 240
           MPHCEAELYNNLLQ NW  ELLN + LFGNSFE+Y Q++SEF+NS +VDS+++I+A R+F
Sbjct: 181 MPHCEAELYNNLLQANWRVELLNRIALFGNSFEVY-QYLSEFRNSTIVDSSRHIVAVREF 240

Query: 241 SREIKIKTLSDEYFGAFHDSSWHFFSTVLPTELQ 274
           + E  IKT+SD+YF AFHDSSWHFFS    TELQ
Sbjct: 241 THEYVIKTVSDDYFAAFHDSSWHFFSPDPKTELQ 272

[Close]
BLAST of Cp4.1LG01g19230 vs. TrEMBL
Match: A5B9I4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012927 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 3.2e-93
Identity = 172/268 (64.18%), Postives = 213/268 (79.48%), Query Frame = 1 

Query: 1   MTASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQED-QRTWSPSDQANDTIRESK 60
           M ASAKT+ +       DWTVVLP RG+ R+N  K +  E  Q+ W+P+D   D  RESK
Sbjct: 1   MAASAKTITLESSDAISDWTVVLPXRGKXRRNFLKSKHPEQHQQPWAPTDLEMDLHRESK 60

Query: 61  LLHKMEICIEKVESSQFYRTLVDELETMPVLESLNRVLASESKMGMVIYGVGSIENYENP 120
           L+ K++ICI K+ +S FY  L+D+++T  +LE+  RVL SE KM MV+YG+GSIE+YE P
Sbjct: 61  LMQKIQICIRKLGNSTFYHVLLDQVQTPHMLEAFLRVLGSELKMQMVVYGIGSIESYEPP 120

Query: 121 RLQLSLAILLKRKFSWIGRLEVFDPILSAIECRVIESFGCSILSVNEQGRRCAQKPTMFF 180
           RLQLSLAILLKRKFSWIG ++VFDPILSA E RV+E+ GCS+LSVNEQGRR A KPT+FF
Sbjct: 121 RLQLSLAILLKRKFSWIGDIKVFDPILSATESRVLEALGCSVLSVNEQGRRQASKPTLFF 180

Query: 181 MPHCEAELYNNLLQENWTGELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKF 240
           MPHCEAELY+NLLQENW  E +N++VLFGNSF  YEQ VSEF++S +VDS+++ILA RKF
Sbjct: 181 MPHCEAELYDNLLQENWRTERMNNIVLFGNSFGTYEQHVSEFRSSTLVDSSRHILAVRKF 240

Query: 241 SREIKIKTLSDEYFGAFHDSSWHFFSTV 268
           +RE  IKT+SD+YFGAFHDSSWHFFS V
Sbjct: 241 TREFAIKTVSDDYFGAFHDSSWHFFSLV 268

[Close]
BLAST of Cp4.1LG01g19230 vs. TAIR10
Match: AT5G59560.1 (AT5G59560.1 sensitivity to red light reduced protein (SRR1))

HSP 1 Score: 278.5 bits (711), Expect = 4.5e-75
Identity = 136/267 (50.94%), Postives = 197/267 (73.78%), Query Frame = 1 

Query: 10  IPDQSNNGDWTVVLP---RRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKLLHKMEI 69
           + + S++G+W VVLP   R+GR+RK  PK + +E+++ W   D   D  R+++L  KMEI
Sbjct: 5   VKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEI 64

Query: 70  CIEKVESSQFYRTLVDELETMPVLESLNRVLASESKMGMVIYGVGSIENYENPRLQLSLA 129
            ++K+ESS FY   +++L++  V   +  VL SE+++ MV+YG+GSIE+YE+PR QLS+A
Sbjct: 65  SLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIA 124

Query: 130 ILLKRKFSWIG-RLEVFDPILSAIECRVIESFGCSILSVNEQGRRCAQKPTMFFMPHCEA 189
           IL+KR+F W+G  +EVFDP+LSA E   +ES GCS+LSVNEQ RR A KPT+FFMPHCEA
Sbjct: 125 ILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEA 184

Query: 190 ELYNNLLQENWTGELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFSREIKI 249
            LY+NLLQ NW  + L+ + LFGNSF++YE+ VS   ++ V+ + K I+A+++ + E  I
Sbjct: 185 NLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFAI 244

Query: 250 KTLSDEYFGAFHDSSWHFFSTVLPTEL 273
           +T SD+YF AFHDSSWHFFS+ + +EL
Sbjct: 245 ETESDDYFAAFHDSSWHFFSSGIDSEL 269

[Close]
BLAST of Cp4.1LG01g19230 vs. NCBI nr
Match: gi|659072440|ref|XP_008465606.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis melo])

HSP 1 Score: 490.7 bits (1262), Expect = 1.6e-135
Identity = 238/277 (85.92%), Postives = 260/277 (93.86%), Query Frame = 1 

Query: 1   MTASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           M ASAKT+AIPDQSNNGDWTVVLPRRG+QRKN PKLR +EDQRTWSP+DQANDTIRESKL
Sbjct: 1   MAASAKTVAIPDQSNNGDWTVVLPRRGKQRKNFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LHKMEICIEKVESSQFYRTLVDELETMPVLESLNRVLASESKMGMVIYGVGSIENYENPR 120
           L KME+CI+K+ESSQFYRTLV+ELET+P LESLNRVL SESKMG+VIYGVGSIENYENPR
Sbjct: 61  LQKMEMCIKKLESSQFYRTLVEELETVPFLESLNRVLDSESKMGVVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGRLEVFDPILSAIECRVIESFGCSILSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWI  LEVFDPILSA ECR++ESFGCS+LSVNEQGRRCA+KPTMFFM
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAEKPTMFFM 180

Query: 181 PHCEAELYNNLLQENWTGELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELYNNLLQENW  +LLNH++LFGNSFEIYEQFVSEFKNSPVVDS+ +ILASRKF 
Sbjct: 181 PHCEAELYNNLLQENWKVKLLNHIMLFGNSFEIYEQFVSEFKNSPVVDSSNFILASRKFV 240

Query: 241 REIKIKTLSDEYFGAFHDSSWHFFSTVLPTELQFTDL 278
           REIKIKT+SD+YFGAFHDSSWHFFS V P EL+F DL
Sbjct: 241 REIKIKTVSDDYFGAFHDSSWHFFSPVSPLELKFIDL 277

[Close]
BLAST of Cp4.1LG01g19230 vs. NCBI nr
Match: gi|449452014|ref|XP_004143755.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis sativus])

HSP 1 Score: 483.4 bits (1243), Expect = 2.6e-133
Identity = 235/277 (84.84%), Postives = 257/277 (92.78%), Query Frame = 1 

Query: 1   MTASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           M ASAKT++IPDQSN+GDWTVVLPRRG+Q+K  PKLR +EDQRTWSP+DQANDTIRESKL
Sbjct: 1   MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 60

Query: 61  LHKMEICIEKVESSQFYRTLVDELETMPVLESLNRVLASESKMGMVIYGVGSIENYENPR 120
           L KMEICI+K+E+SQFY+TLV+ELETMP LESLNRVL SESKMGMV+YGVGSIENYENPR
Sbjct: 61  LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGRLEVFDPILSAIECRVIESFGCSILSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWI  LEVFDPILSA ECR++ESFGCS+LS NEQGRRCA+KPTMFFM
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 180

Query: 181 PHCEAELYNNLLQENWTGELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELYNNLLQENW   LLNH+VLFGNSFEIYEQFVSEFKNSPVVDS+K+ILASRKF 
Sbjct: 181 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 240

Query: 241 REIKIKTLSDEYFGAFHDSSWHFFSTVLPTELQFTDL 278
           REIKIKT+SD+YFGAFHDSSW FFS V P ELQF DL
Sbjct: 241 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 277

[Close]
BLAST of Cp4.1LG01g19230 vs. NCBI nr
Match: gi|700195945|gb|KGN51122.1| (hypothetical protein Csa_5G457240 [Cucumis sativus])

HSP 1 Score: 483.4 bits (1243), Expect = 2.6e-133
Identity = 235/277 (84.84%), Postives = 257/277 (92.78%), Query Frame = 1 

Query: 1   MTASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           M ASAKT++IPDQSN+GDWTVVLPRRG+Q+K  PKLR +EDQRTWSP+DQANDTIRESKL
Sbjct: 129 MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 188

Query: 61  LHKMEICIEKVESSQFYRTLVDELETMPVLESLNRVLASESKMGMVIYGVGSIENYENPR 120
           L KMEICI+K+E+SQFY+TLV+ELETMP LESLNRVL SESKMGMV+YGVGSIENYENPR
Sbjct: 189 LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 248

Query: 121 LQLSLAILLKRKFSWIGRLEVFDPILSAIECRVIESFGCSILSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWI  LEVFDPILSA ECR++ESFGCS+LS NEQGRRCA+KPTMFFM
Sbjct: 249 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 308

Query: 181 PHCEAELYNNLLQENWTGELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELYNNLLQENW   LLNH+VLFGNSFEIYEQFVSEFKNSPVVDS+K+ILASRKF 
Sbjct: 309 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 368

Query: 241 REIKIKTLSDEYFGAFHDSSWHFFSTVLPTELQFTDL 278
           REIKIKT+SD+YFGAFHDSSW FFS V P ELQF DL
Sbjct: 369 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 405

[Close]
BLAST of Cp4.1LG01g19230 vs. NCBI nr
Match: gi|645270677|ref|XP_008240563.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Prunus mume])

HSP 1 Score: 365.2 bits (936), Expect = 1.0e-97
Identity = 181/279 (64.87%), Postives = 221/279 (79.21%), Query Frame = 1 

Query: 1   MTASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKL--RKQEDQRTWSPSDQANDTIRES 60
           M ASAKTL     + NGDWTVV  RRGRQRKN PK+  R Q+    W+P+D   +  RES
Sbjct: 1   MAASAKTLTAESHTLNGDWTVVSSRRGRQRKNPPKITIRVQKQPSHWAPTDLEINFARES 60

Query: 61  KLLHKMEICIEKVESSQFYRTLVDELETMPVLESLNRVLASESKMGMVIYGVGSIENYEN 120
           KL+ K++IC++K+E SQF+  L+DE++T  ++   +RVL+SE KM MVIYG+GSIE+YE+
Sbjct: 61  KLMQKIQICMKKLEMSQFFLNLLDEIQTPEMMNYFHRVLSSELKMKMVIYGIGSIESYES 120

Query: 121 PRLQLSLAILLKRKFSWIGRLEVFDPILSAIECRVIESFGCSILSVNEQGRRCAQKPTMF 180
           PRLQLSLAILLKRKF+WIG +EVFDPILSA E RV+E+  CS+LS+NEQGRR A+KPTMF
Sbjct: 121 PRLQLSLAILLKRKFNWIGDIEVFDPILSATESRVLEALECSVLSINEQGRRQAEKPTMF 180

Query: 181 FMPHCEAELYNNLLQENWTGELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRK 240
           FMPHCEAELY+NLLQ NW   LLN  VLFGNSFE YEQ +SE+KNS +VDS K+ILA RK
Sbjct: 181 FMPHCEAELYDNLLQANWEARLLNCTVLFGNSFETYEQHLSEYKNSAIVDSTKHILAVRK 240

Query: 241 FSREIKIKTLSDEYFGAFHDSSWHFFSTVLPTELQFTDL 278
           F+ E +IKT+SD YF AFHDSSWHFF  VL TELQ ++L
Sbjct: 241 FTDEFRIKTISDTYFSAFHDSSWHFFRPVLETELQLSNL 279

[Close]
BLAST of Cp4.1LG01g19230 vs. NCBI nr
Match: gi|595806281|ref|XP_007202423.1| (hypothetical protein PRUPE_ppa009752mg [Prunus persica])

HSP 1 Score: 360.9 bits (925), Expect = 2.0e-96
Identity = 179/279 (64.16%), Postives = 219/279 (78.49%), Query Frame = 1 

Query: 1   MTASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKL--RKQEDQRTWSPSDQANDTIRES 60
           M ASAKTL     + NGDWTVV  RRGRQR+N PK+  R Q+    W+P+D   +  RES
Sbjct: 1   MAASAKTLTAESHTLNGDWTVVSSRRGRQRRNPPKITIRVQKQPSHWAPTDLEINFARES 60

Query: 61  KLLHKMEICIEKVESSQFYRTLVDELETMPVLESLNRVLASESKMGMVIYGVGSIENYEN 120
           KL+ KM+IC++K+E SQF+  L+DE++T  ++   +RVL+SE KM MVIYG+GSIE+YE+
Sbjct: 61  KLMQKMQICMKKLEMSQFFLNLLDEIQTPEMMNYFHRVLSSELKMKMVIYGIGSIESYES 120

Query: 121 PRLQLSLAILLKRKFSWIGRLEVFDPILSAIECRVIESFGCSILSVNEQGRRCAQKPTMF 180
           PRLQLSLAILLKRKF+WIG +EVFDPILSA E RV+E+  C +LS+NEQGRR A+KPTMF
Sbjct: 121 PRLQLSLAILLKRKFNWIGDIEVFDPILSATESRVLEALECCVLSINEQGRRQAEKPTMF 180

Query: 181 FMPHCEAELYNNLLQENWTGELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRK 240
           FMPHCEAELY+NLLQ NW   LLN  VLFGNSFE YEQ +SE+KNS +VDS ++ILA RK
Sbjct: 181 FMPHCEAELYDNLLQANWEARLLNCTVLFGNSFETYEQHLSEYKNSAIVDSTRHILAVRK 240

Query: 241 FSREIKIKTLSDEYFGAFHDSSWHFFSTVLPTELQFTDL 278
           F+ E +IKT+SD YF AFHDSSWHFF  VL TELQ + L
Sbjct: 241 FTDEFRIKTISDTYFSAFHDSSWHFFRPVLETELQLSYL 279

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g19230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SRR1_ARATH8.0e-7450.94Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 ... [more]
SRR1L_MOUSE4.3e-1931.84SRR1-like protein OS=Mus musculus GN=Srrd PE=2 SV=4[more]
SRR1L_HUMAN1.1e-1736.36SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=1[more]
BLAST of Cp4.1LG01g19230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRU2_CUCSA1.8e-13384.84Uncharacterized protein OS=Cucumis sativus GN=Csa_5G457240 PE=4 SV=1[more]
M5VQP0_PRUPE1.4e-9664.16Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009752mg PE=4 SV=1[more]
W9R0F4_9ROSA4.9e-9462.09Uncharacterized protein OS=Morus notabilis GN=L484_023959 PE=4 SV=1[more]
B9S4K4_RICCO1.1e-9360.95Protein SENSITIVITY TO RED LIGHT REDUCED, putative OS=Ricinus communis GN=RCOM_0... [more]
A5B9I4_VITVI3.2e-9364.18Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012927 PE=4 SV=1[more]
BLAST of Cp4.1LG01g19230 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G59560.14.5e-7550.94 sensitivity to red light reduced protein (SRR1)[more]
BLAST of Cp4.1LG01g19230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072440|ref|XP_008465606.1|1.6e-13585.92PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis melo][more]
gi|449452014|ref|XP_004143755.1|2.6e-13384.84PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis sativus][more]
gi|700195945|gb|KGN51122.1|2.6e-13384.84hypothetical protein Csa_5G457240 [Cucumis sativus][more]
gi|645270677|ref|XP_008240563.1|1.0e-9764.87PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Prunus mume][more]
gi|595806281|ref|XP_007202423.1|2.0e-9664.16hypothetical protein PRUPE_ppa009752mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012942SRR1-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007623 circadian rhythm
biological_process GO:0010017 red or far-red light signaling pathway
biological_process GO:0009585 red, far-red light phototransduction
biological_process GO:0042752 regulation of circadian rhythm
biological_process GO:0008150 biological_process
cellular_component GO:0044424 intracellular part
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g19230.1Cp4.1LG01g19230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012942Sensitivity To Red Light Reduced-like, SRR1PFAMPF07985SRR1coord: 105..157
score: 1.1
NoneNo IPR availablePANTHERPTHR28626FAMILY NOT NAMEDcoord: 9..265
score: 4.8
NoneNo IPR availablePANTHERPTHR28626:SF3SRR1-LIKE PROTEINcoord: 9..265
score: 4.8