CmoCh15G008450 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G008450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Sensitivity to red light reduced protein (SRR1), putative
Location	Cmo_Chr15 : 4282751 .. 4283584 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCGTCGGCAAAAACTCTCGCGGTTCCGGATCAGTCAAATAATGGCGACTGGACAGTTGTTCTACCTCGTCGCGGCAGGCAGAGGAAAACTTTTCCGAAGCTCAGAAATCGAGAAGATCAGCGGACTTGGTCTCCCACTGATCAGGCTAATGATGCAATCAGAGAATCGAAACTGTTGCAGAAGATGGAAATCTGTATTAAGAAAGTTGAGAGCTCCCAATTTTATCGAACTCTTATTGACGAGCTTGGAACGACGCCAGTCTTGGAATCCTTAAATAGGGTTTTGGCCTCGGAATCAAAGATGGAGATGGTAATCTATGGCGTTGGAAGCATAGAGAATTACGAAAATCCTCGATTGCAGCTCAGTCTTGCAATCTTGTTGAAGAGAAAATTTAGTTGGATTGGAAGTTTGGAGGTGTTCGATCCAATTCTTTCTGCAACTGAATGTCGGGTAATGGAATCCTTTGGTTGTTCCGTTCTATCAGTAAATGAGGAAGGACGGCGATGTGCGCAGAAGGCAACATTGTTCTTTATGCCCCATTGCGAGGCAGAGCTGTACGACAATCTTTTACAGGAAAATTGGACGGTGGAGCTGTTGAATCACGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAACAGTTTGTATCTGAATTCAAGAGCTCACCCGTTGTTGATTCAGCAAAGTACATTTTAGCCTCAAGAAAGTTCACACGCGAGATCAAAATCAAGACACTTTCAGATGATTATTTTGGTGCTTTCCATGATTCGAGTTGGCATTTTTTCAGCCCTGTTTCACCGACGGAGCTGCAATTCACAGATCTTTGA

mRNA sequence

ATGGCAGCGTCGGCAAAAACTCTCGCGGTTCCGGATCAGTCAAATAATGGCGACTGGACAGTTGTTCTACCTCGTCGCGGCAGGCAGAGGAAAACTTTTCCGAAGCTCAGAAATCGAGAAGATCAGCGGACTTGGTCTCCCACTGATCAGGCTAATGATGCAATCAGAGAATCGAAACTGTTGCAGAAGATGGAAATCTGTATTAAGAAAGTTGAGAGCTCCCAATTTTATCGAACTCTTATTGACGAGCTTGGAACGACGCCAGTCTTGGAATCCTTAAATAGGGTTTTGGCCTCGGAATCAAAGATGGAGATGGTAATCTATGGCGTTGGAAGCATAGAGAATTACGAAAATCCTCGATTGCAGCTCAGTCTTGCAATCTTGTTGAAGAGAAAATTTAGTTGGATTGGAAGTTTGGAGGTGTTCGATCCAATTCTTTCTGCAACTGAATGTCGGGTAATGGAATCCTTTGGTTGTTCCGTTCTATCAGTAAATGAGGAAGGACGGCGATGTGCGCAGAAGGCAACATTGTTCTTTATGCCCCATTGCGAGGCAGAGCTGTACGACAATCTTTTACAGGAAAATTGGACGGTGGAGCTGTTGAATCACGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAACAGTTTGTATCTGAATTCAAGAGCTCACCCGTTGTTGATTCAGCAAAGTACATTTTAGCCTCAAGAAAGTTCACACGCGAGATCAAAATCAAGACACTTTCAGATGATTATTTTGGTGCTTTCCATGATTCGAGTTGGCATTTTTTCAGCCCTGTTTCACCGACGGAGCTGCAATTCACAGATCTTTGA

Coding sequence (CDS)

ATGGCAGCGTCGGCAAAAACTCTCGCGGTTCCGGATCAGTCAAATAATGGCGACTGGACAGTTGTTCTACCTCGTCGCGGCAGGCAGAGGAAAACTTTTCCGAAGCTCAGAAATCGAGAAGATCAGCGGACTTGGTCTCCCACTGATCAGGCTAATGATGCAATCAGAGAATCGAAACTGTTGCAGAAGATGGAAATCTGTATTAAGAAAGTTGAGAGCTCCCAATTTTATCGAACTCTTATTGACGAGCTTGGAACGACGCCAGTCTTGGAATCCTTAAATAGGGTTTTGGCCTCGGAATCAAAGATGGAGATGGTAATCTATGGCGTTGGAAGCATAGAGAATTACGAAAATCCTCGATTGCAGCTCAGTCTTGCAATCTTGTTGAAGAGAAAATTTAGTTGGATTGGAAGTTTGGAGGTGTTCGATCCAATTCTTTCTGCAACTGAATGTCGGGTAATGGAATCCTTTGGTTGTTCCGTTCTATCAGTAAATGAGGAAGGACGGCGATGTGCGCAGAAGGCAACATTGTTCTTTATGCCCCATTGCGAGGCAGAGCTGTACGACAATCTTTTACAGGAAAATTGGACGGTGGAGCTGTTGAATCACGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAACAGTTTGTATCTGAATTCAAGAGCTCACCCGTTGTTGATTCAGCAAAGTACATTTTAGCCTCAAGAAAGTTCACACGCGAGATCAAAATCAAGACACTTTCAGATGATTATTTTGGTGCTTTCCATGATTCGAGTTGGCATTTTTTCAGCCCTGTTTCACCGACGGAGCTGCAATTCACAGATCTTTGA

Homology

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BLAST of CmoCh15G008450 vs. Swiss-Prot
Match: SRR1_ARATH (Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 SV=2)

HSP 1 Score: 283.9 bits (725), Expect = 1.9e-75
Identity = 142/267 (53.18%), Postives = 195/267 (73.03%), Query Frame = 1


Query: 10  VPDQSNNGDWTVVLP---RRGRQRKTFPKLRNREDQRTWSPTDQANDAIRESKLLQKMEI 69
           V + S++G+W VVLP   R+GR+RK  PK +  E+++ W   D   D  R+++L QKMEI
Sbjct: 5   VKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEI 64

Query: 70  CIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPRLQLSLA 129
            +KK+ESS FY   +++L +  V   +  VL SE++++MV+YG+GSIE+YE+PR QLS+A
Sbjct: 65  SLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIA 124

Query: 130 ILLKRKFSWIG-SLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFFMPHCEA 189
           IL+KR+F W+G ++EVFDP+LSATE   +ES GCSVLSVNE+ RR A K TLFFMPHCEA
Sbjct: 125 ILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEA 184

Query: 190 ELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFTREIKI 249
            LY NLLQ NW ++ L+ + LFGNSF++YE+ VS    + V+ + K I+A+++ T E  I
Sbjct: 185 NLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFAI 244

Query: 250 KTLSDDYFGAFHDSSWHFFSPVSPTEL 273
           +T SDDYF AFHDSSWHFFS    +EL
Sbjct: 245 ETESDDYFAAFHDSSWHFFSSGIDSEL 269

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BLAST of CmoCh15G008450 vs. Swiss-Prot
Match: SRR1L_MOUSE (SRR1-like protein OS=Mus musculus GN=Srrd PE=2 SV=4)

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-19
Identity = 72/216 (33.33%), Postives = 111/216 (51.39%), Query Frame = 1


Query: 19  WTVVLPRRGRQRKTFPKLRNREDQRTWSPTD---------QANDAIRESKL----LQKME 78
           W+ V PRR R+R    + R  E  R     D         +A + +R S      L+ + 
Sbjct: 9   WSAVAPRR-RKRAAGRRPRPGEGPRAEPEADGEAVLRRLREAEEDLRISDFCSSALETIT 68

Query: 79  ICIKK-VESSQFYRTLIDELGTTPVLESLNR--VLASESKMEMVIYGVGSIENYENPRLQ 138
            C++K +E  Q     +  L     L S ++  + +S S ++ V YG+G+  +    R+Q
Sbjct: 69  ECLRKQLEQLQPLTEALGRLHLGSSLPSASQEPLASSASHVKCVCYGLGTFASCPTARIQ 128

Query: 139 LSLAILLKRKFSWIGS-LEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQ-KATLFFM 198
           L+  +L   K     S   V+DP+ S TE  V+ S G +VLS NEEG+R  Q + T+F+M
Sbjct: 129 LAFMLLFLEKCQVPRSHCWVYDPLFSQTEVSVLTSLGVTVLSENEEGKRSVQGQPTVFYM 188

Query: 199 PHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQ 217
           PHC   LY+NLL  NW+ + L+ V++ GNSF   E+
Sbjct: 189 PHCGTALYNNLLWSNWSADALSRVLIIGNSFRGLEE 223

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BLAST of CmoCh15G008450 vs. Swiss-Prot
Match: SRR1L_HUMAN (SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.4e-17
Identity = 61/177 (34.46%), Postives = 94/177 (53.11%), Query Frame = 1


Query: 103 MEMVIYGVGSIENYENPRLQLSLAILLKRKFSWIGS-LEVFDPILSATECRVMESFGCSV 162
           ++ V YG+G+       R QL+  +LL  K     S   V+DP+ S  E  V+ + G +V
Sbjct: 139 LKCVCYGIGNFATCIVARNQLTFLLLLLEKCQIPRSHCWVYDPLFSQLEIEVLNTLGVTV 198

Query: 163 LSVNEEGRRCAQ-KATLFFMPHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSE 222
           LS NEEG+R  + + T+F+M HC   LY+NLL  NW+V+ L+ +V+ GNSF+  E+    
Sbjct: 199 LSENEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSKMVIIGNSFKGLEE---R 258

Query: 223 FKSSPVVDSAKYILASRKFTREIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTDL 278
             +  +  +  YI    K   E++    S  Y   F+D+S H+F PV   E    D+
Sbjct: 259 LLARILQKNYPYIAKILKGLEELEFPQTS-QYMDIFNDTSVHWF-PVQKLEQLSIDI 310

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BLAST of CmoCh15G008450 vs. TrEMBL
Match: A0A0A0KRU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G457240 PE=4 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 3.0e-136
Identity = 239/277 (86.28%), Postives = 261/277 (94.22%), Query Frame = 1


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDAIRESKL 60
           MAASAKT+++PDQSN+GDWTVVLPRRG+Q+KTFPKLR REDQRTWSPTDQAND IRESKL
Sbjct: 129 MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 188

Query: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120
           LQKMEICIKK+E+SQFY+TL++EL T P LESLNRVL SESKM MV+YGVGSIENYENPR
Sbjct: 189 LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 248

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFFM 180
           LQLSLAILLKRKFSWI SLEVFDPILSATECR+MESFGCSVLS NE+GRRCA+K T+FFM
Sbjct: 249 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 308

Query: 181 PHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240
           PHCEAELY+NLLQENW V LLNH+VLFGNSFEIYEQFVSEFK+SPVVDS+K+ILASRKF 
Sbjct: 309 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 368

Query: 241 REIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTDL 278
           REIKIKT+SDDYFGAFHDSSW FFSPVSP ELQF DL
Sbjct: 369 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 405

[Close]

BLAST of CmoCh15G008450 vs. TrEMBL
Match: W9R0F4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023959 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 2.9e-99
Identity = 182/278 (65.47%), Postives = 228/278 (82.01%), Query Frame = 1


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQR--TWSPTDQANDAIRES 60
           MAASAKTL     S NG+WTVVLPRRGR+R T P  R RE Q+  +W+PTD   +++RES
Sbjct: 1   MAASAKTLTAKTSSMNGEWTVVLPRRGRKR-TCPITRTREQQQPVSWAPTDFEVNSLRES 60

Query: 61  KLLQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYEN 120
           KL QKM+IC+KK+E+SQF+ TL+D++ +  +++  ++VL SE KM+MVIYG+GSIE+YEN
Sbjct: 61  KLKQKMQICMKKLETSQFFLTLLDQIRSPEIIQCFHKVLGSELKMQMVIYGIGSIESYEN 120

Query: 121 PRLQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLF 180
           PRLQLSLA+LLK KF WIG +EVFDPILSATE RV+E  GCSVLS+NE+GRR  QK T+ 
Sbjct: 121 PRLQLSLALLLKSKFGWIGDIEVFDPILSATESRVLEFLGCSVLSINEQGRRKVQKPTML 180

Query: 181 FMPHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRK 240
           FMPHCEAELYDNLLQENW +E LN++V+FGNSFE YEQFVSEFK+S V  SA+++L+++K
Sbjct: 181 FMPHCEAELYDNLLQENWRIEHLNNLVIFGNSFENYEQFVSEFKNSTVA-SARHMLSAQK 240

Query: 241 FTREIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTD 277
           FT E KI+T+ DDYFGAFHDSSWHFFSPV    LQ+ +
Sbjct: 241 FTEEFKIQTVLDDYFGAFHDSSWHFFSPVIEPGLQYVN 276

[Close]

BLAST of CmoCh15G008450 vs. TrEMBL
Match: M5VQP0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009752mg PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 9.5e-98
Identity = 181/279 (64.87%), Postives = 220/279 (78.85%), Query Frame = 1


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRT--WSPTDQANDAIRES 60
           MAASAKTL     + NGDWTVV  RRGRQR+  PK+  R  ++   W+PTD   +  RES
Sbjct: 1   MAASAKTLTAESHTLNGDWTVVSSRRGRQRRNPPKITIRVQKQPSHWAPTDLEINFARES 60

Query: 61  KLLQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYEN 120
           KL+QKM+IC+KK+E SQF+  L+DE+ T  ++   +RVL+SE KM+MVIYG+GSIE+YE+
Sbjct: 61  KLMQKMQICMKKLEMSQFFLNLLDEIQTPEMMNYFHRVLSSELKMKMVIYGIGSIESYES 120

Query: 121 PRLQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLF 180
           PRLQLSLAILLKRKF+WIG +EVFDPILSATE RV+E+  C VLS+NE+GRR A+K T+F
Sbjct: 121 PRLQLSLAILLKRKFNWIGDIEVFDPILSATESRVLEALECCVLSINEQGRRQAEKPTMF 180

Query: 181 FMPHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRK 240
           FMPHCEAELYDNLLQ NW   LLN  VLFGNSFE YEQ +SE+K+S +VDS ++ILA RK
Sbjct: 181 FMPHCEAELYDNLLQANWEARLLNCTVLFGNSFETYEQHLSEYKNSAIVDSTRHILAVRK 240

Query: 241 FTREIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTDL 278
           FT E +IKT+SD YF AFHDSSWHFF PV  TELQ + L
Sbjct: 241 FTDEFRIKTISDTYFSAFHDSSWHFFRPVLETELQLSYL 279

[Close]

BLAST of CmoCh15G008450 vs. TrEMBL
Match: A5B9I4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012927 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 1.6e-97
Identity = 180/269 (66.91%), Postives = 218/269 (81.04%), Query Frame = 1


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNRED-QRTWSPTDQANDAIRESK 60
           MAASAKT+ +       DWTVVLP RG+ R+ F K ++ E  Q+ W+PTD   D  RESK
Sbjct: 1   MAASAKTITLESSDAISDWTVVLPXRGKXRRNFLKSKHPEQHQQPWAPTDLEMDLHRESK 60

Query: 61  LLQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENP 120
           L+QK++ICI+K+ +S FY  L+D++ T  +LE+  RVL SE KM+MV+YG+GSIE+YE P
Sbjct: 61  LMQKIQICIRKLGNSTFYHVLLDQVQTPHMLEAFLRVLGSELKMQMVVYGIGSIESYEPP 120

Query: 121 RLQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFF 180
           RLQLSLAILLKRKFSWIG ++VFDPILSATE RV+E+ GCSVLSVNE+GRR A K TLFF
Sbjct: 121 RLQLSLAILLKRKFSWIGDIKVFDPILSATESRVLEALGCSVLSVNEQGRRQASKPTLFF 180

Query: 181 MPHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKF 240
           MPHCEAELYDNLLQENW  E +N++VLFGNSF  YEQ VSEF+SS +VDS+++ILA RKF
Sbjct: 181 MPHCEAELYDNLLQENWRTERMNNIVLFGNSFGTYEQHVSEFRSSTLVDSSRHILAVRKF 240

Query: 241 TREIKIKTLSDDYFGAFHDSSWHFFSPVS 269
           TRE  IKT+SDDYFGAFHDSSWHFFS V+
Sbjct: 241 TREFAIKTVSDDYFGAFHDSSWHFFSLVA 269

[Close]

BLAST of CmoCh15G008450 vs. TrEMBL
Match: B9S4K4_RICCO (Protein SENSITIVITY TO RED LIGHT REDUCED, putative OS=Ricinus communis GN=RCOM_0809580 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.4e-96
Identity = 173/274 (63.14%), Postives = 224/274 (81.75%), Query Frame = 1


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRN-REDQRTWSPTDQANDAIRESK 60
           M ASAK L V + + NG+WTVVLP RG++ + F K+R   E Q+ W P D  +D+ R+SK
Sbjct: 1   MDASAKILTVDNHTCNGEWTVVLP-RGKRSRNFSKIRTPEEQQQPWVPADLESDSNRQSK 60

Query: 61  LLQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENP 120
           L++KM IC+KKVE+SQFY+TL++++ T   L+S ++VL SE KM+MVIYG+GSIE+YE P
Sbjct: 61  LIEKMNICMKKVENSQFYQTLLEQIQTPESLDSFHKVLGSELKMQMVIYGIGSIESYETP 120

Query: 121 RLQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFF 180
           R+QLS+AIL+K++FSWIG +EVFDP+LSATE RV+E+ GCSVLSVNE GRRC  + TLF+
Sbjct: 121 RIQLSVAILMKKEFSWIGDIEVFDPVLSATESRVLEALGCSVLSVNEHGRRCVTRPTLFY 180

Query: 181 MPHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKF 240
           MPHCEAELY+NLLQ NW VELLN + LFGNSFE+Y Q++SEF++S +VDS+++I+A R+F
Sbjct: 181 MPHCEAELYNNLLQANWRVELLNRIALFGNSFEVY-QYLSEFRNSTIVDSSRHIVAVREF 240

Query: 241 TREIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQ 274
           T E  IKT+SDDYF AFHDSSWHFFSP   TELQ
Sbjct: 241 THEYVIKTVSDDYFAAFHDSSWHFFSPDPKTELQ 272

[Close]

BLAST of CmoCh15G008450 vs. TAIR10
Match: AT5G59560.1 (AT5G59560.1 sensitivity to red light reduced protein (SRR1))

HSP 1 Score: 283.9 bits (725), Expect = 1.1e-76
Identity = 142/267 (53.18%), Postives = 195/267 (73.03%), Query Frame = 1


Query: 10  VPDQSNNGDWTVVLP---RRGRQRKTFPKLRNREDQRTWSPTDQANDAIRESKLLQKMEI 69
           V + S++G+W VVLP   R+GR+RK  PK +  E+++ W   D   D  R+++L QKMEI
Sbjct: 5   VKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEI 64

Query: 70  CIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPRLQLSLA 129
            +KK+ESS FY   +++L +  V   +  VL SE++++MV+YG+GSIE+YE+PR QLS+A
Sbjct: 65  SLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIA 124

Query: 130 ILLKRKFSWIG-SLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFFMPHCEA 189
           IL+KR+F W+G ++EVFDP+LSATE   +ES GCSVLSVNE+ RR A K TLFFMPHCEA
Sbjct: 125 ILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEA 184

Query: 190 ELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFTREIKI 249
            LY NLLQ NW ++ L+ + LFGNSF++YE+ VS    + V+ + K I+A+++ T E  I
Sbjct: 185 NLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFAI 244

Query: 250 KTLSDDYFGAFHDSSWHFFSPVSPTEL 273
           +T SDDYF AFHDSSWHFFS    +EL
Sbjct: 245 ETESDDYFAAFHDSSWHFFSSGIDSEL 269

[Close]

BLAST of CmoCh15G008450 vs. NCBI nr
Match: gi|659072440|ref|XP_008465606.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis melo])

HSP 1 Score: 500.4 bits (1287), Expect = 2.1e-138
Identity = 242/277 (87.36%), Postives = 263/277 (94.95%), Query Frame = 1


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDAIRESKL 60
           MAASAKT+A+PDQSNNGDWTVVLPRRG+QRK FPKLRNREDQRTWSPTDQAND IRESKL
Sbjct: 1   MAASAKTVAIPDQSNNGDWTVVLPRRGKQRKNFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120
           LQKME+CIKK+ESSQFYRTL++EL T P LESLNRVL SESKM +VIYGVGSIENYENPR
Sbjct: 61  LQKMEMCIKKLESSQFYRTLVEELETVPFLESLNRVLDSESKMGVVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFFM 180
           LQLSLAILLKRKFSWI SLEVFDPILSATECR+MESFGCSVLSVNE+GRRCA+K T+FFM
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAEKPTMFFM 180

Query: 181 PHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240
           PHCEAELY+NLLQENW V+LLNH++LFGNSFEIYEQFVSEFK+SPVVDS+ +ILASRKF 
Sbjct: 181 PHCEAELYNNLLQENWKVKLLNHIMLFGNSFEIYEQFVSEFKNSPVVDSSNFILASRKFV 240

Query: 241 REIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTDL 278
           REIKIKT+SDDYFGAFHDSSWHFFSPVSP EL+F DL
Sbjct: 241 REIKIKTVSDDYFGAFHDSSWHFFSPVSPLELKFIDL 277

[Close]

BLAST of CmoCh15G008450 vs. NCBI nr
Match: gi|449452014|ref|XP_004143755.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis sativus])

HSP 1 Score: 492.7 bits (1267), Expect = 4.3e-136
Identity = 239/277 (86.28%), Postives = 261/277 (94.22%), Query Frame = 1


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDAIRESKL 60
           MAASAKT+++PDQSN+GDWTVVLPRRG+Q+KTFPKLR REDQRTWSPTDQAND IRESKL
Sbjct: 1   MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120
           LQKMEICIKK+E+SQFY+TL++EL T P LESLNRVL SESKM MV+YGVGSIENYENPR
Sbjct: 61  LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFFM 180
           LQLSLAILLKRKFSWI SLEVFDPILSATECR+MESFGCSVLS NE+GRRCA+K T+FFM
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 180

Query: 181 PHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240
           PHCEAELY+NLLQENW V LLNH+VLFGNSFEIYEQFVSEFK+SPVVDS+K+ILASRKF 
Sbjct: 181 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 240

Query: 241 REIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTDL 278
           REIKIKT+SDDYFGAFHDSSW FFSPVSP ELQF DL
Sbjct: 241 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 277

[Close]

BLAST of CmoCh15G008450 vs. NCBI nr
Match: gi|700195945|gb|KGN51122.1| (hypothetical protein Csa_5G457240 [Cucumis sativus])

HSP 1 Score: 492.7 bits (1267), Expect = 4.3e-136
Identity = 239/277 (86.28%), Postives = 261/277 (94.22%), Query Frame = 1


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDAIRESKL 60
           MAASAKT+++PDQSN+GDWTVVLPRRG+Q+KTFPKLR REDQRTWSPTDQAND IRESKL
Sbjct: 129 MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 188

Query: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120
           LQKMEICIKK+E+SQFY+TL++EL T P LESLNRVL SESKM MV+YGVGSIENYENPR
Sbjct: 189 LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 248

Query: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFFM 180
           LQLSLAILLKRKFSWI SLEVFDPILSATECR+MESFGCSVLS NE+GRRCA+K T+FFM
Sbjct: 249 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 308

Query: 181 PHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240
           PHCEAELY+NLLQENW V LLNH+VLFGNSFEIYEQFVSEFK+SPVVDS+K+ILASRKF 
Sbjct: 309 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 368

Query: 241 REIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTDL 278
           REIKIKT+SDDYFGAFHDSSW FFSPVSP ELQF DL
Sbjct: 369 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 405

[Close]

BLAST of CmoCh15G008450 vs. NCBI nr
Match: gi|703096898|ref|XP_010095970.1| (hypothetical protein L484_023959 [Morus notabilis])

HSP 1 Score: 369.8 bits (948), Expect = 4.2e-99
Identity = 182/278 (65.47%), Postives = 228/278 (82.01%), Query Frame = 1


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQR--TWSPTDQANDAIRES 60
           MAASAKTL     S NG+WTVVLPRRGR+R T P  R RE Q+  +W+PTD   +++RES
Sbjct: 1   MAASAKTLTAKTSSMNGEWTVVLPRRGRKR-TCPITRTREQQQPVSWAPTDFEVNSLRES 60

Query: 61  KLLQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYEN 120
           KL QKM+IC+KK+E+SQF+ TL+D++ +  +++  ++VL SE KM+MVIYG+GSIE+YEN
Sbjct: 61  KLKQKMQICMKKLETSQFFLTLLDQIRSPEIIQCFHKVLGSELKMQMVIYGIGSIESYEN 120

Query: 121 PRLQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLF 180
           PRLQLSLA+LLK KF WIG +EVFDPILSATE RV+E  GCSVLS+NE+GRR  QK T+ 
Sbjct: 121 PRLQLSLALLLKSKFGWIGDIEVFDPILSATESRVLEFLGCSVLSINEQGRRKVQKPTML 180

Query: 181 FMPHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRK 240
           FMPHCEAELYDNLLQENW +E LN++V+FGNSFE YEQFVSEFK+S V  SA+++L+++K
Sbjct: 181 FMPHCEAELYDNLLQENWRIEHLNNLVIFGNSFENYEQFVSEFKNSTVA-SARHMLSAQK 240

Query: 241 FTREIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTD 277
           FT E KI+T+ DDYFGAFHDSSWHFFSPV    LQ+ +
Sbjct: 241 FTEEFKIQTVLDDYFGAFHDSSWHFFSPVIEPGLQYVN 276

[Close]

BLAST of CmoCh15G008450 vs. NCBI nr
Match: gi|645270677|ref|XP_008240563.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Prunus mume])

HSP 1 Score: 369.0 bits (946), Expect = 7.2e-99
Identity = 183/279 (65.59%), Postives = 222/279 (79.57%), Query Frame = 1


Query: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRT--WSPTDQANDAIRES 60
           MAASAKTL     + NGDWTVV  RRGRQRK  PK+  R  ++   W+PTD   +  RES
Sbjct: 1   MAASAKTLTAESHTLNGDWTVVSSRRGRQRKNPPKITIRVQKQPSHWAPTDLEINFARES 60

Query: 61  KLLQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYEN 120
           KL+QK++IC+KK+E SQF+  L+DE+ T  ++   +RVL+SE KM+MVIYG+GSIE+YE+
Sbjct: 61  KLMQKIQICMKKLEMSQFFLNLLDEIQTPEMMNYFHRVLSSELKMKMVIYGIGSIESYES 120

Query: 121 PRLQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLF 180
           PRLQLSLAILLKRKF+WIG +EVFDPILSATE RV+E+  CSVLS+NE+GRR A+K T+F
Sbjct: 121 PRLQLSLAILLKRKFNWIGDIEVFDPILSATESRVLEALECSVLSINEQGRRQAEKPTMF 180

Query: 181 FMPHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRK 240
           FMPHCEAELYDNLLQ NW   LLN  VLFGNSFE YEQ +SE+K+S +VDS K+ILA RK
Sbjct: 181 FMPHCEAELYDNLLQANWEARLLNCTVLFGNSFETYEQHLSEYKNSAIVDSTKHILAVRK 240

Query: 241 FTREIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTDL 278
           FT E +IKT+SD YF AFHDSSWHFF PV  TELQ ++L
Sbjct: 241 FTDEFRIKTISDTYFSAFHDSSWHFFRPVLETELQLSNL 279

The following BLAST results are available for this feature:

BLAST of CmoCh15G008450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRR1_ARATH	1.9e-75	53.18	Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 ...	[more]
SRR1L_MOUSE	1.9e-19	33.33	SRR1-like protein OS=Mus musculus GN=Srrd PE=2 SV=4	[more]
SRR1L_HUMAN	1.4e-17	34.46	SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=1	[more]

BLAST of CmoCh15G008450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRU2_CUCSA	3.0e-136	86.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G457240 PE=4 SV=1	[more]
W9R0F4_9ROSA	2.9e-99	65.47	Uncharacterized protein OS=Morus notabilis GN=L484_023959 PE=4 SV=1	[more]
M5VQP0_PRUPE	9.5e-98	64.87	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009752mg PE=4 SV=1	[more]
A5B9I4_VITVI	1.6e-97	66.91	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012927 PE=4 SV=1	[more]
B9S4K4_RICCO	1.4e-96	63.14	Protein SENSITIVITY TO RED LIGHT REDUCED, putative OS=Ricinus communis GN=RCOM_0...	[more]

BLAST of CmoCh15G008450 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59560.1	1.1e-76	53.18	sensitivity to red light reduced protein (SRR1)	[more]

BLAST of CmoCh15G008450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072440\|ref\|XP_008465606.1\|	2.1e-138	87.36	PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis melo]	[more]
gi\|449452014\|ref\|XP_004143755.1\|	4.3e-136	86.28	PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis sativus]	[more]
gi\|700195945\|gb\|KGN51122.1\|	4.3e-136	86.28	hypothetical protein Csa_5G457240 [Cucumis sativus]	[more]
gi\|703096898\|ref\|XP_010095970.1\|	4.2e-99	65.47	hypothetical protein L484_023959 [Morus notabilis]	[more]
gi\|645270677\|ref\|XP_008240563.1\|	7.2e-99	65.59	PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012942	SRR1-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007623	circadian rhythm
biological_process	GO:0010017	red or far-red light signaling pathway
biological_process	GO:0009585	red, far-red light phototransduction
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0008150	biological_process
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G008450.1	CmoCh15G008450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012942	Sensitivity To Red Light Reduced-like, SRR1	PFAM	PF07985	SRR1	coord: 105..157 score: 2.3
None	No IPR available	PANTHER	PTHR28626	FAMILY NOT NAMED	coord: 9..266 score: 5.6
None	No IPR available	PANTHER	PTHR28626:SF3	SRR1-LIKE PROTEIN	coord: 9..266 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G008450	Cucsa.317650	Cucumber (Gy14) v1	cgycmoB0876
CmoCh15G008450	CmaCh15G008190	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G008450	CmaCh04G022150	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G008450	Cla005918	Watermelon (97103) v1	cmowmB268
CmoCh15G008450	Csa5G457240	Cucumber (Chinese Long) v2	cmocuB291
CmoCh15G008450	MELO3C005120	Melon (DHL92) v3.5.1	cmomeB240
CmoCh15G008450	ClCG01G007760	Watermelon (Charleston Gray)	cmowcgB248
CmoCh15G008450	CSPI05G15800	Wild cucumber (PI 183967)	cmocpiB300
CmoCh15G008450	Lsi09G008180	Bottle gourd (USVL1VR-Ls)	cmolsiB256
CmoCh15G008450	Cp4.1LG13g05890	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G008450	Cp4.1LG01g19230	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G008450	MELO3C005120.2	Melon (DHL92) v3.6.1	cmomedB272
CmoCh15G008450	CsaV3_5G024840	Cucumber (Chinese Long) v3	cmocucB0352
CmoCh15G008450	Bhi12G000957	Wax gourd	cmowgoB0360
CmoCh15G008450	CsGy5G015530	Cucumber (Gy14) v2	cgybcmoB588
CmoCh15G008450	Carg01388	Silver-seed gourd	carcmoB1118
CmoCh15G008450	Carg17748	Silver-seed gourd	carcmoB0647

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G008450	CmoCh04G023160	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G008450	Watermelon (97103) v2	cmowmbB271