CmoCh04G023160 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G023160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Sensitivity to red light reduced protein (SRR1), putative
Location	Cmo_Chr04 : 17224284 .. 17225108 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCGTCGGCAAAAACTCTTGCTATTCCGGATCAGTCGAATAATGGCGACTGGACGGTTGTTTTACCTCGTCGTGGCAGGCAGAGGAAGAATTTGCCGAAGCTAAGAAAACAAGAAGATCAGCGGACTTGGTCTCCGTCTGATCAGGCCAATGATACAATCAGGGAATCGAAACTGTTGCATAAGATGGAAATCTGTATTAAGAAAGTTGAGAGCTCCCAATTTTATCGAACTCTTGTTGATGAGCTTGAAATGATGCCAGTCTTGGAATCCTTGAATAGGGTTTTGGCCTCGGAGTCGAAGATGGGGATGGTTTTCTATGGCGTAGGAAGCATTGAAAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCTATATTGTTGAAGAGAAAGTTTAGTTGGATTGGAAGGTTAGAAGTGTTCGATCCAATTCTCTCTGCAATCGAATGTCAGGTTATCGAATCCTTTGGTTGTTCTGTTCTATCAGTAAATGAGCAAGGACGGCGATGTGCGCAGAAGCCAACAATGTTCTTCATGCCCCATTGCGAGGCAGAGCTGTACAGCAATCTTTTACAGGAGAATTGGACGGTGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAGCAGTTTGTATCTGAATTCAAGAACTCACCCGTTGTTGATTCGGCAAAGTACATCTTGGCCTCTAGAAAATTCTCACGCGAGATCAAAATCAAGACACTTTCAGATGAATATTTTGGTGCTTCAAGTTGGCATGTTTTCAGCCCTTTTTTACCGACAGAGCTGCAGTTCACAGATCTTTGA

mRNA sequence

ATGGCAGCGTCGGCAAAAACTCTTGCTATTCCGGATCAGTCGAATAATGGCGACTGGACGGTTGTTTTACCTCGTCGTGGCAGGCAGAGGAAGAATTTGCCGAAGCTAAGAAAACAAGAAGATCAGCGGACTTGGTCTCCGTCTGATCAGGCCAATGATACAATCAGGGAATCGAAACTGTTGCATAAGATGGAAATCTGTATTAAGAAAGTTGAGAGCTCCCAATTTTATCGAACTCTTGTTGATGAGCTTGAAATGATGCCAGTCTTGGAATCCTTGAATAGGGTTTTGGCCTCGGAGTCGAAGATGGGGATGGTTTTCTATGGCGTAGGAAGCATTGAAAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCTATATTGTTGAAGAGAAAGTTTAGTTGGATTGGAAGGTTAGAAGTGTTCGATCCAATTCTCTCTGCAATCGAATGTCAGGTTATCGAATCCTTTGGTTGTTCTGTTCTATCAGTAAATGAGCAAGGACGGCGATGTGCGCAGAAGCCAACAATGTTCTTCATGCCCCATTGCGAGGCAGAGCTGTACAGCAATCTTTTACAGGAGAATTGGACGGTGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAGCAGTTTGTATCTGAATTCAAGAACTCACCCGTTGTTGATTCGGCAAAGTACATCTTGGCCTCTAGAAAATTCTCACGCGAGATCAAAATCAAGACACTTTCAGATGAATATTTTGGTGCTTCAAGTTGGCATGTTTTCAGCCCTTTTTTACCGACAGAGCTGCAGTTCACAGATCTTTGA

Coding sequence (CDS)

ATGGCAGCGTCGGCAAAAACTCTTGCTATTCCGGATCAGTCGAATAATGGCGACTGGACGGTTGTTTTACCTCGTCGTGGCAGGCAGAGGAAGAATTTGCCGAAGCTAAGAAAACAAGAAGATCAGCGGACTTGGTCTCCGTCTGATCAGGCCAATGATACAATCAGGGAATCGAAACTGTTGCATAAGATGGAAATCTGTATTAAGAAAGTTGAGAGCTCCCAATTTTATCGAACTCTTGTTGATGAGCTTGAAATGATGCCAGTCTTGGAATCCTTGAATAGGGTTTTGGCCTCGGAGTCGAAGATGGGGATGGTTTTCTATGGCGTAGGAAGCATTGAAAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCTATATTGTTGAAGAGAAAGTTTAGTTGGATTGGAAGGTTAGAAGTGTTCGATCCAATTCTCTCTGCAATCGAATGTCAGGTTATCGAATCCTTTGGTTGTTCTGTTCTATCAGTAAATGAGCAAGGACGGCGATGTGCGCAGAAGCCAACAATGTTCTTCATGCCCCATTGCGAGGCAGAGCTGTACAGCAATCTTTTACAGGAGAATTGGACGGTGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGATCTATGAGCAGTTTGTATCTGAATTCAAGAACTCACCCGTTGTTGATTCGGCAAAGTACATCTTGGCCTCTAGAAAATTCTCACGCGAGATCAAAATCAAGACACTTTCAGATGAATATTTTGGTGCTTCAAGTTGGCATGTTTTCAGCCCTTTTTTACCGACAGAGCTGCAGTTCACAGATCTTTGA

Homology

[Close]

BLAST of CmoCh04G023160 vs. Swiss-Prot
Match: SRR1_ARATH (Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 SV=2)

HSP 1 Score: 265.8 bits (678), Expect = 5.3e-70
Identity = 135/267 (50.56%), Postives = 191/267 (71.54%), Query Frame = 1


Query: 10  IPDQSNNGDWTVVLP---RRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKLLHKMEI 69
           + + S++G+W VVLP   R+GR+RK  PK + +E+++ W   D   D  R+++L  KMEI
Sbjct: 5   VKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEI 64

Query: 70  CIKKVESSQFYRTLVDELEMMPVLESLNRVLASESKMGMVFYGVGSIENYENPRLQLSLA 129
            +KK+ESS FY   +++L+   V   +  VL SE+++ MV YG+GSIE+YE+PR QLS+A
Sbjct: 65  SLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIA 124

Query: 130 ILLKRKFSWIG-RLEVFDPILSAIECQVIESFGCSVLSVNEQGRRCAQKPTMFFMPHCEA 189
           IL+KR+F W+G  +EVFDP+LSA E   +ES GCSVLSVNEQ RR A KPT+FFMPHCEA
Sbjct: 125 ILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEA 184

Query: 190 ELYSNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFSREIKI 249
            LYSNLLQ NW ++ L+ + LFGNSF++YE+ VS   ++ V+ + K I+A+++ + E  I
Sbjct: 185 NLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFAI 244

Query: 250 KTLSDEYFGA---SSWHVFSPFLPTEL 270
           +T SD+YF A   SSWH FS  + +EL
Sbjct: 245 ETESDDYFAAFHDSSWHFFSSGIDSEL 269

[Close]

BLAST of CmoCh04G023160 vs. Swiss-Prot
Match: SRR1L_MOUSE (SRR1-like protein OS=Mus musculus GN=Srrd PE=2 SV=4)

HSP 1 Score: 95.5 bits (236), Expect = 9.5e-19
Identity = 71/221 (32.13%), Postives = 112/221 (50.68%), Query Frame = 1


Query: 19  WTVVLPRRGRQRKNLPKLRKQEDQRTWSPSD---------QANDTIRESKL----LHKME 78
           W+ V PRR R+R    + R  E  R    +D         +A + +R S      L  + 
Sbjct: 9   WSAVAPRR-RKRAAGRRPRPGEGPRAEPEADGEAVLRRLREAEEDLRISDFCSSALETIT 68

Query: 79  ICIKK-VESSQFYRTLVDELEMMPVLESLNR--VLASESKMGMVFYGVGSIENYENPRLQ 138
            C++K +E  Q     +  L +   L S ++  + +S S +  V YG+G+  +    R+Q
Sbjct: 69  ECLRKQLEQLQPLTEALGRLHLGSSLPSASQEPLASSASHVKCVCYGLGTFASCPTARIQ 128

Query: 139 LSLAIL------LKRKFSWIGRLEVFDPILSAIECQVIESFGCSVLSVNEQGRRCAQ-KP 198
           L+  +L      + R   W     V+DP+ S  E  V+ S G +VLS NE+G+R  Q +P
Sbjct: 129 LAFMLLFLEKCQVPRSHCW-----VYDPLFSQTEVSVLTSLGVTVLSENEEGKRSVQGQP 188

Query: 199 TMFFMPHCEAELYSNLLQENWTVELLNHVVLFGNSFEIYEQ 217
           T+F+MPHC   LY+NLL  NW+ + L+ V++ GNSF   E+
Sbjct: 189 TVFYMPHCGTALYNNLLWSNWSADALSRVLIIGNSFRGLEE 223

[Close]

BLAST of CmoCh04G023160 vs. Swiss-Prot
Match: SRR1L_HUMAN (SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.4e-16
Identity = 47/114 (41.23%), Postives = 72/114 (63.16%), Query Frame = 1


Query: 106 VFYGVGSIENYENPRLQLSLAILLKRKFSWIGRLE--VFDPILSAIECQVIESFGCSVLS 165
           V YG+G+       R QL+  +LL  K   I R    V+DP+ S +E +V+ + G +VLS
Sbjct: 142 VCYGIGNFATCIVARNQLTFLLLLLEKCQ-IPRSHCWVYDPLFSQLEIEVLNTLGVTVLS 201

Query: 166 VNEQGRRCAQ-KPTMFFMPHCEAELYSNLLQENWTVELLNHVVLFGNSFEIYEQ 217
            NE+G+R  + +PT+F+M HC   LY+NLL  NW+V+ L+ +V+ GNSF+  E+
Sbjct: 202 ENEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSKMVIIGNSFKGLEE 254

[Close]

BLAST of CmoCh04G023160 vs. TrEMBL
Match: A0A0A0KRU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G457240 PE=4 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 1.0e-128
Identity = 232/277 (83.75%), Postives = 253/277 (91.34%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           MAASAKT++IPDQSN+GDWTVVLPRRG+Q+K  PKLR +EDQRTWSP+DQANDTIRESKL
Sbjct: 129 MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 188

Query: 61  LHKMEICIKKVESSQFYRTLVDELEMMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120
           L KMEICIKK+E+SQFY+TLV+ELE MP LESLNRVL SESKMGMV YGVGSIENYENPR
Sbjct: 189 LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 248

Query: 121 LQLSLAILLKRKFSWIGRLEVFDPILSAIECQVIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWI  LEVFDPILSA EC+++ESFGCSVLS NEQGRRCA+KPTMFFM
Sbjct: 249 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 308

Query: 181 PHCEAELYSNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELY+NLLQENW V LLNH+VLFGNSFEIYEQFVSEFKNSPVVDS+K+ILASRKF 
Sbjct: 309 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 368

Query: 241 REIKIKTLSDEYFGA---SSWHVFSPFLPTELQFTDL 275
           REIKIKT+SD+YFGA   SSW  FSP  P ELQF DL
Sbjct: 369 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 405

[Close]

BLAST of CmoCh04G023160 vs. TrEMBL
Match: M5VQP0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009752mg PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.7e-91
Identity = 175/279 (62.72%), Postives = 213/279 (76.34%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKL--RKQEDQRTWSPSDQANDTIRES 60
           MAASAKTL     + NGDWTVV  RRGRQR+N PK+  R Q+    W+P+D   +  RES
Sbjct: 1   MAASAKTLTAESHTLNGDWTVVSSRRGRQRRNPPKITIRVQKQPSHWAPTDLEINFARES 60

Query: 61  KLLHKMEICIKKVESSQFYRTLVDELEMMPVLESLNRVLASESKMGMVFYGVGSIENYEN 120
           KL+ KM+IC+KK+E SQF+  L+DE++   ++   +RVL+SE KM MV YG+GSIE+YE+
Sbjct: 61  KLMQKMQICMKKLEMSQFFLNLLDEIQTPEMMNYFHRVLSSELKMKMVIYGIGSIESYES 120

Query: 121 PRLQLSLAILLKRKFSWIGRLEVFDPILSAIECQVIESFGCSVLSVNEQGRRCAQKPTMF 180
           PRLQLSLAILLKRKF+WIG +EVFDPILSA E +V+E+  C VLS+NEQGRR A+KPTMF
Sbjct: 121 PRLQLSLAILLKRKFNWIGDIEVFDPILSATESRVLEALECCVLSINEQGRRQAEKPTMF 180

Query: 181 FMPHCEAELYSNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRK 240
           FMPHCEAELY NLLQ NW   LLN  VLFGNSFE YEQ +SE+KNS +VDS ++ILA RK
Sbjct: 181 FMPHCEAELYDNLLQANWEARLLNCTVLFGNSFETYEQHLSEYKNSAIVDSTRHILAVRK 240

Query: 241 FSREIKIKTLSDEYFGA---SSWHVFSPFLPTELQFTDL 275
           F+ E +IKT+SD YF A   SSWH F P L TELQ + L
Sbjct: 241 FTDEFRIKTISDTYFSAFHDSSWHFFRPVLETELQLSYL 279

[Close]

BLAST of CmoCh04G023160 vs. TrEMBL
Match: W9R0F4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023959 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.5e-90
Identity = 169/277 (61.01%), Postives = 218/277 (78.70%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRK-NLPKLRKQEDQRTWSPSDQANDTIRESK 60
           MAASAKTL     S NG+WTVVLPRRGR+R   + + R+Q+   +W+P+D   +++RESK
Sbjct: 1   MAASAKTLTAKTSSMNGEWTVVLPRRGRKRTCPITRTREQQQPVSWAPTDFEVNSLRESK 60

Query: 61  LLHKMEICIKKVESSQFYRTLVDELEMMPVLESLNRVLASESKMGMVFYGVGSIENYENP 120
           L  KM+IC+KK+E+SQF+ TL+D++    +++  ++VL SE KM MV YG+GSIE+YENP
Sbjct: 61  LKQKMQICMKKLETSQFFLTLLDQIRSPEIIQCFHKVLGSELKMQMVIYGIGSIESYENP 120

Query: 121 RLQLSLAILLKRKFSWIGRLEVFDPILSAIECQVIESFGCSVLSVNEQGRRCAQKPTMFF 180
           RLQLSLA+LLK KF WIG +EVFDPILSA E +V+E  GCSVLS+NEQGRR  QKPTM F
Sbjct: 121 RLQLSLALLLKSKFGWIGDIEVFDPILSATESRVLEFLGCSVLSINEQGRRKVQKPTMLF 180

Query: 181 MPHCEAELYSNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKF 240
           MPHCEAELY NLLQENW +E LN++V+FGNSFE YEQFVSEFKNS V  SA+++L+++KF
Sbjct: 181 MPHCEAELYDNLLQENWRIEHLNNLVIFGNSFENYEQFVSEFKNSTVA-SARHMLSAQKF 240

Query: 241 SREIKIKTLSDEYFGA---SSWHVFSPFLPTELQFTD 274
           + E KI+T+ D+YFGA   SSWH FSP +   LQ+ +
Sbjct: 241 TEEFKIQTVLDDYFGAFHDSSWHFFSPVIEPGLQYVN 276

[Close]

BLAST of CmoCh04G023160 vs. TrEMBL
Match: B9S4K4_RICCO (Protein SENSITIVITY TO RED LIGHT REDUCED, putative OS=Ricinus communis GN=RCOM_0809580 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 6.1e-89
Identity = 163/274 (59.49%), Postives = 219/274 (79.93%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLR-KQEDQRTWSPSDQANDTIRESK 60
           M ASAK L + + + NG+WTVVLP RG++ +N  K+R  +E Q+ W P+D  +D+ R+SK
Sbjct: 1   MDASAKILTVDNHTCNGEWTVVLP-RGKRSRNFSKIRTPEEQQQPWVPADLESDSNRQSK 60

Query: 61  LLHKMEICIKKVESSQFYRTLVDELEMMPVLESLNRVLASESKMGMVFYGVGSIENYENP 120
           L+ KM IC+KKVE+SQFY+TL+++++    L+S ++VL SE KM MV YG+GSIE+YE P
Sbjct: 61  LIEKMNICMKKVENSQFYQTLLEQIQTPESLDSFHKVLGSELKMQMVIYGIGSIESYETP 120

Query: 121 RLQLSLAILLKRKFSWIGRLEVFDPILSAIECQVIESFGCSVLSVNEQGRRCAQKPTMFF 180
           R+QLS+AIL+K++FSWIG +EVFDP+LSA E +V+E+ GCSVLSVNE GRRC  +PT+F+
Sbjct: 121 RIQLSVAILMKKEFSWIGDIEVFDPVLSATESRVLEALGCSVLSVNEHGRRCVTRPTLFY 180

Query: 181 MPHCEAELYSNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKF 240
           MPHCEAELY+NLLQ NW VELLN + LFGNSFE+Y Q++SEF+NS +VDS+++I+A R+F
Sbjct: 181 MPHCEAELYNNLLQANWRVELLNRIALFGNSFEVY-QYLSEFRNSTIVDSSRHIVAVREF 240

Query: 241 SREIKIKTLSDEYFGA---SSWHVFSPFLPTELQ 271
           + E  IKT+SD+YF A   SSWH FSP   TELQ
Sbjct: 241 THEYVIKTVSDDYFAAFHDSSWHFFSPDPKTELQ 272

[Close]

BLAST of CmoCh04G023160 vs. TrEMBL
Match: A5B9I4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012927 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.5e-87
Identity = 167/266 (62.78%), Postives = 207/266 (77.82%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQED-QRTWSPSDQANDTIRESK 60
           MAASAKT+ +       DWTVVLP RG+ R+N  K +  E  Q+ W+P+D   D  RESK
Sbjct: 1   MAASAKTITLESSDAISDWTVVLPXRGKXRRNFLKSKHPEQHQQPWAPTDLEMDLHRESK 60

Query: 61  LLHKMEICIKKVESSQFYRTLVDELEMMPVLESLNRVLASESKMGMVFYGVGSIENYENP 120
           L+ K++ICI+K+ +S FY  L+D+++   +LE+  RVL SE KM MV YG+GSIE+YE P
Sbjct: 61  LMQKIQICIRKLGNSTFYHVLLDQVQTPHMLEAFLRVLGSELKMQMVVYGIGSIESYEPP 120

Query: 121 RLQLSLAILLKRKFSWIGRLEVFDPILSAIECQVIESFGCSVLSVNEQGRRCAQKPTMFF 180
           RLQLSLAILLKRKFSWIG ++VFDPILSA E +V+E+ GCSVLSVNEQGRR A KPT+FF
Sbjct: 121 RLQLSLAILLKRKFSWIGDIKVFDPILSATESRVLEALGCSVLSVNEQGRRQASKPTLFF 180

Query: 181 MPHCEAELYSNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKF 240
           MPHCEAELY NLLQENW  E +N++VLFGNSF  YEQ VSEF++S +VDS+++ILA RKF
Sbjct: 181 MPHCEAELYDNLLQENWRTERMNNIVLFGNSFGTYEQHVSEFRSSTLVDSSRHILAVRKF 240

Query: 241 SREIKIKTLSDEYFGA---SSWHVFS 263
           +RE  IKT+SD+YFGA   SSWH FS
Sbjct: 241 TREFAIKTVSDDYFGAFHDSSWHFFS 266

[Close]

BLAST of CmoCh04G023160 vs. TAIR10
Match: AT5G59560.1 (AT5G59560.1 sensitivity to red light reduced protein (SRR1))

HSP 1 Score: 265.8 bits (678), Expect = 3.0e-71
Identity = 135/267 (50.56%), Postives = 191/267 (71.54%), Query Frame = 1


Query: 10  IPDQSNNGDWTVVLP---RRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKLLHKMEI 69
           + + S++G+W VVLP   R+GR+RK  PK + +E+++ W   D   D  R+++L  KMEI
Sbjct: 5   VKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKMEI 64

Query: 70  CIKKVESSQFYRTLVDELEMMPVLESLNRVLASESKMGMVFYGVGSIENYENPRLQLSLA 129
            +KK+ESS FY   +++L+   V   +  VL SE+++ MV YG+GSIE+YE+PR QLS+A
Sbjct: 65  SLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSIA 124

Query: 130 ILLKRKFSWIG-RLEVFDPILSAIECQVIESFGCSVLSVNEQGRRCAQKPTMFFMPHCEA 189
           IL+KR+F W+G  +EVFDP+LSA E   +ES GCSVLSVNEQ RR A KPT+FFMPHCEA
Sbjct: 125 ILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCEA 184

Query: 190 ELYSNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFSREIKI 249
            LYSNLLQ NW ++ L+ + LFGNSF++YE+ VS   ++ V+ + K I+A+++ + E  I
Sbjct: 185 NLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFAI 244

Query: 250 KTLSDEYFGA---SSWHVFSPFLPTEL 270
           +T SD+YF A   SSWH FS  + +EL
Sbjct: 245 ETESDDYFAAFHDSSWHFFSSGIDSEL 269

[Close]

BLAST of CmoCh04G023160 vs. NCBI nr
Match: gi|659072440|ref|XP_008465606.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis melo])

HSP 1 Score: 474.9 bits (1221), Expect = 9.2e-131
Identity = 234/277 (84.48%), Postives = 256/277 (92.42%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           MAASAKT+AIPDQSNNGDWTVVLPRRG+QRKN PKLR +EDQRTWSP+DQANDTIRESKL
Sbjct: 1   MAASAKTVAIPDQSNNGDWTVVLPRRGKQRKNFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LHKMEICIKKVESSQFYRTLVDELEMMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120
           L KME+CIKK+ESSQFYRTLV+ELE +P LESLNRVL SESKMG+V YGVGSIENYENPR
Sbjct: 61  LQKMEMCIKKLESSQFYRTLVEELETVPFLESLNRVLDSESKMGVVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGRLEVFDPILSAIECQVIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWI  LEVFDPILSA EC+++ESFGCSVLSVNEQGRRCA+KPTMFFM
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAEKPTMFFM 180

Query: 181 PHCEAELYSNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELY+NLLQENW V+LLNH++LFGNSFEIYEQFVSEFKNSPVVDS+ +ILASRKF 
Sbjct: 181 PHCEAELYNNLLQENWKVKLLNHIMLFGNSFEIYEQFVSEFKNSPVVDSSNFILASRKFV 240

Query: 241 REIKIKTLSDEYFGA---SSWHVFSPFLPTELQFTDL 275
           REIKIKT+SD+YFGA   SSWH FSP  P EL+F DL
Sbjct: 241 REIKIKTVSDDYFGAFHDSSWHFFSPVSPLELKFIDL 277

[Close]

BLAST of CmoCh04G023160 vs. NCBI nr
Match: gi|449452014|ref|XP_004143755.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis sativus])

HSP 1 Score: 467.6 bits (1202), Expect = 1.5e-128
Identity = 232/277 (83.75%), Postives = 253/277 (91.34%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           MAASAKT++IPDQSN+GDWTVVLPRRG+Q+K  PKLR +EDQRTWSP+DQANDTIRESKL
Sbjct: 1   MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 60

Query: 61  LHKMEICIKKVESSQFYRTLVDELEMMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120
           L KMEICIKK+E+SQFY+TLV+ELE MP LESLNRVL SESKMGMV YGVGSIENYENPR
Sbjct: 61  LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIGRLEVFDPILSAIECQVIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWI  LEVFDPILSA EC+++ESFGCSVLS NEQGRRCA+KPTMFFM
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 180

Query: 181 PHCEAELYSNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELY+NLLQENW V LLNH+VLFGNSFEIYEQFVSEFKNSPVVDS+K+ILASRKF 
Sbjct: 181 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 240

Query: 241 REIKIKTLSDEYFGA---SSWHVFSPFLPTELQFTDL 275
           REIKIKT+SD+YFGA   SSW  FSP  P ELQF DL
Sbjct: 241 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 277

[Close]

BLAST of CmoCh04G023160 vs. NCBI nr
Match: gi|700195945|gb|KGN51122.1| (hypothetical protein Csa_5G457240 [Cucumis sativus])

HSP 1 Score: 467.6 bits (1202), Expect = 1.5e-128
Identity = 232/277 (83.75%), Postives = 253/277 (91.34%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60
           MAASAKT++IPDQSN+GDWTVVLPRRG+Q+K  PKLR +EDQRTWSP+DQANDTIRESKL
Sbjct: 129 MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 188

Query: 61  LHKMEICIKKVESSQFYRTLVDELEMMPVLESLNRVLASESKMGMVFYGVGSIENYENPR 120
           L KMEICIKK+E+SQFY+TLV+ELE MP LESLNRVL SESKMGMV YGVGSIENYENPR
Sbjct: 189 LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 248

Query: 121 LQLSLAILLKRKFSWIGRLEVFDPILSAIECQVIESFGCSVLSVNEQGRRCAQKPTMFFM 180
           LQLSLAILLKRKFSWI  LEVFDPILSA EC+++ESFGCSVLS NEQGRRCA+KPTMFFM
Sbjct: 249 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 308

Query: 181 PHCEAELYSNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240
           PHCEAELY+NLLQENW V LLNH+VLFGNSFEIYEQFVSEFKNSPVVDS+K+ILASRKF 
Sbjct: 309 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 368

Query: 241 REIKIKTLSDEYFGA---SSWHVFSPFLPTELQFTDL 275
           REIKIKT+SD+YFGA   SSW  FSP  P ELQF DL
Sbjct: 369 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 405

[Close]

BLAST of CmoCh04G023160 vs. NCBI nr
Match: gi|645270677|ref|XP_008240563.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Prunus mume])

HSP 1 Score: 348.2 bits (892), Expect = 1.3e-92
Identity = 177/279 (63.44%), Postives = 215/279 (77.06%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKL--RKQEDQRTWSPSDQANDTIRES 60
           MAASAKTL     + NGDWTVV  RRGRQRKN PK+  R Q+    W+P+D   +  RES
Sbjct: 1   MAASAKTLTAESHTLNGDWTVVSSRRGRQRKNPPKITIRVQKQPSHWAPTDLEINFARES 60

Query: 61  KLLHKMEICIKKVESSQFYRTLVDELEMMPVLESLNRVLASESKMGMVFYGVGSIENYEN 120
           KL+ K++IC+KK+E SQF+  L+DE++   ++   +RVL+SE KM MV YG+GSIE+YE+
Sbjct: 61  KLMQKIQICMKKLEMSQFFLNLLDEIQTPEMMNYFHRVLSSELKMKMVIYGIGSIESYES 120

Query: 121 PRLQLSLAILLKRKFSWIGRLEVFDPILSAIECQVIESFGCSVLSVNEQGRRCAQKPTMF 180
           PRLQLSLAILLKRKF+WIG +EVFDPILSA E +V+E+  CSVLS+NEQGRR A+KPTMF
Sbjct: 121 PRLQLSLAILLKRKFNWIGDIEVFDPILSATESRVLEALECSVLSINEQGRRQAEKPTMF 180

Query: 181 FMPHCEAELYSNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRK 240
           FMPHCEAELY NLLQ NW   LLN  VLFGNSFE YEQ +SE+KNS +VDS K+ILA RK
Sbjct: 181 FMPHCEAELYDNLLQANWEARLLNCTVLFGNSFETYEQHLSEYKNSAIVDSTKHILAVRK 240

Query: 241 FSREIKIKTLSDEYFGA---SSWHVFSPFLPTELQFTDL 275
           F+ E +IKT+SD YF A   SSWH F P L TELQ ++L
Sbjct: 241 FTDEFRIKTISDTYFSAFHDSSWHFFRPVLETELQLSNL 279

[Close]

BLAST of CmoCh04G023160 vs. NCBI nr
Match: gi|595806281|ref|XP_007202423.1| (hypothetical protein PRUPE_ppa009752mg [Prunus persica])

HSP 1 Score: 344.0 bits (881), Expect = 2.5e-91
Identity = 175/279 (62.72%), Postives = 213/279 (76.34%), Query Frame = 1


Query: 1   MAASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKL--RKQEDQRTWSPSDQANDTIRES 60
           MAASAKTL     + NGDWTVV  RRGRQR+N PK+  R Q+    W+P+D   +  RES
Sbjct: 1   MAASAKTLTAESHTLNGDWTVVSSRRGRQRRNPPKITIRVQKQPSHWAPTDLEINFARES 60

Query: 61  KLLHKMEICIKKVESSQFYRTLVDELEMMPVLESLNRVLASESKMGMVFYGVGSIENYEN 120
           KL+ KM+IC+KK+E SQF+  L+DE++   ++   +RVL+SE KM MV YG+GSIE+YE+
Sbjct: 61  KLMQKMQICMKKLEMSQFFLNLLDEIQTPEMMNYFHRVLSSELKMKMVIYGIGSIESYES 120

Query: 121 PRLQLSLAILLKRKFSWIGRLEVFDPILSAIECQVIESFGCSVLSVNEQGRRCAQKPTMF 180
           PRLQLSLAILLKRKF+WIG +EVFDPILSA E +V+E+  C VLS+NEQGRR A+KPTMF
Sbjct: 121 PRLQLSLAILLKRKFNWIGDIEVFDPILSATESRVLEALECCVLSINEQGRRQAEKPTMF 180

Query: 181 FMPHCEAELYSNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRK 240
           FMPHCEAELY NLLQ NW   LLN  VLFGNSFE YEQ +SE+KNS +VDS ++ILA RK
Sbjct: 181 FMPHCEAELYDNLLQANWEARLLNCTVLFGNSFETYEQHLSEYKNSAIVDSTRHILAVRK 240

Query: 241 FSREIKIKTLSDEYFGA---SSWHVFSPFLPTELQFTDL 275
           F+ E +IKT+SD YF A   SSWH F P L TELQ + L
Sbjct: 241 FTDEFRIKTISDTYFSAFHDSSWHFFRPVLETELQLSYL 279

The following BLAST results are available for this feature:

BLAST of CmoCh04G023160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRR1_ARATH	5.3e-70	50.56	Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 ...	[more]
SRR1L_MOUSE	9.5e-19	32.13	SRR1-like protein OS=Mus musculus GN=Srrd PE=2 SV=4	[more]
SRR1L_HUMAN	3.4e-16	41.23	SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=1	[more]

BLAST of CmoCh04G023160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRU2_CUCSA	1.0e-128	83.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G457240 PE=4 SV=1	[more]
M5VQP0_PRUPE	1.7e-91	62.72	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009752mg PE=4 SV=1	[more]
W9R0F4_9ROSA	2.5e-90	61.01	Uncharacterized protein OS=Morus notabilis GN=L484_023959 PE=4 SV=1	[more]
B9S4K4_RICCO	6.1e-89	59.49	Protein SENSITIVITY TO RED LIGHT REDUCED, putative OS=Ricinus communis GN=RCOM_0...	[more]
A5B9I4_VITVI	1.5e-87	62.78	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012927 PE=4 SV=1	[more]

BLAST of CmoCh04G023160 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59560.1	3.0e-71	50.56	sensitivity to red light reduced protein (SRR1)	[more]

BLAST of CmoCh04G023160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072440\|ref\|XP_008465606.1\|	9.2e-131	84.48	PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis melo]	[more]
gi\|449452014\|ref\|XP_004143755.1\|	1.5e-128	83.75	PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis sativus]	[more]
gi\|700195945\|gb\|KGN51122.1\|	1.5e-128	83.75	hypothetical protein Csa_5G457240 [Cucumis sativus]	[more]
gi\|645270677\|ref\|XP_008240563.1\|	1.3e-92	63.44	PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Prunus mume]	[more]
gi\|595806281\|ref\|XP_007202423.1\|	2.5e-91	62.72	hypothetical protein PRUPE_ppa009752mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012942	SRR1-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007623	circadian rhythm
biological_process	GO:0010017	red or far-red light signaling pathway
biological_process	GO:0009585	red, far-red light phototransduction
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0008150	biological_process
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G023160.1	CmoCh04G023160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012942	Sensitivity To Red Light Reduced-like, SRR1	PFAM	PF07985	SRR1	coord: 105..157 score: 1.3
None	No IPR available	PANTHER	PTHR28626	FAMILY NOT NAMED	coord: 9..263 score: 1.6
None	No IPR available	PANTHER	PTHR28626:SF3	SRR1-LIKE PROTEIN	coord: 9..263 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G023160	Cucsa.317650	Cucumber (Gy14) v1	cgycmoB0877
CmoCh04G023160	CmaCh15G008190	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G023160	CmaCh04G022150	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G023160	Cla005918	Watermelon (97103) v1	cmowmB706
CmoCh04G023160	Csa5G457240	Cucumber (Chinese Long) v2	cmocuB720
CmoCh04G023160	MELO3C005120	Melon (DHL92) v3.5.1	cmomeB625
CmoCh04G023160	ClCG01G007760	Watermelon (Charleston Gray)	cmowcgB636
CmoCh04G023160	CSPI05G15800	Wild cucumber (PI 183967)	cmocpiB728
CmoCh04G023160	Lsi09G008180	Bottle gourd (USVL1VR-Ls)	cmolsiB610
CmoCh04G023160	Cp4.1LG13g05890	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G023160	Cp4.1LG01g19230	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G023160	MELO3C005120.2	Melon (DHL92) v3.6.1	cmomedB714
CmoCh04G023160	CsaV3_5G024840	Cucumber (Chinese Long) v3	cmocucB0852
CmoCh04G023160	Bhi12G000957	Wax gourd	cmowgoB0828
CmoCh04G023160	CsGy5G015530	Cucumber (Gy14) v2	cgybcmoB631
CmoCh04G023160	Carg01388	Silver-seed gourd	carcmoB1121
CmoCh04G023160	Carg17748	Silver-seed gourd	carcmoB0648

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G023160	CmoCh15G008450	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G023160	Watermelon (97103) v2	cmowmbB676
CmoCh04G023160	Wax gourd	cmowgoB0822
CmoCh04G023160	Wax gourd	cmowgoB0823