Cucsa.317650 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.317650
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Protein SENSITIVITY TO RED LIGHT REDUCED 1
Location	scaffold03054 : 75613 .. 76446 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCGTCGGCAAAAACTGTCTCCATTCCAGATCAGTCAAATAGTGGGGACTGGACGGTTGTTCTTCCTCGTCGTGGCAAGCAGAAGAAAACTTTTCCGAAGCTCAGGATTCGAGAAGATCAACGGACTTGGTCTCCCACTGATCAGGCCAATGATACAATTAGAGAATCGAAACTGTTGCAGAAGATGGAAATCTGTATAAAAAAACTTGAGAATTCCCAATTTTATCAAACTCTTGTTGAGGAGCTTGAAACAATGCCATTCTTGGAATCGTTAAATAGGGTTTTGGGCTCGGAGTCAAAGATGGGGATGGTTGTCTATGGCGTAGGAAGCATTGAGAATTATGAAAATCCTCGATTGCAGCTTAGTCTTGCAATATTGTTGAAGAGAAAATTTAGTTGGATTGAAAGTTTGGAGGTGTTTGATCCAATTCTTTCTGCAACTGAATGTCGATTAATGGAATCCTTTGGTTGTTCTGTTCTATCATTTAATGAACAAGGAAGACGATGTGCAGAGAAGCCAACAATGTTCTTCATGCCCCATTGTGAAGCAGAGTTGTACAACAATCTTTTACAGGAAAATTGGAAGGTTGGGCTGTTGAATCATATTGTGTTGTTTGGGAATAGCTTTGAGATTTATGAACAGTTTGTATCTGAATTCAAAAACTCACCCGTTGTTGATTCATCGAAGTTCATCTTGGCCTCAAGAAAGTTCATACGGGAGATCAAAATCAAGACAGTTTCAGATGATTATTTTGGTGCGTTTCATGATTCAAGTTGGCAATTTTTCAGCCCTGTTTCACCACTGGAGCTGCAATTCATAGATCTTTGA

mRNA sequence

ATGGCAGCGTCGGCAAAAACTGTCTCCATTCCAGATCAGTCAAATAGTGGGGACTGGACGGTTGTTCTTCCTCGTCGTGGCAAGCAGAAGAAAACTTTTCCGAAGCTCAGGATTCGAGAAGATCAACGGACTTGGTCTCCCACTGATCAGGCCAATGATACAATTAGAGAATCGAAACTGTTGCAGAAGATGGAAATCTGTATAAAAAAACTTGAGAATTCCCAATTTTATCAAACTCTTGTTGAGGAGCTTGAAACAATGCCATTCTTGGAATCGTTAAATAGGGTTTTGGGCTCGGAGTCAAAGATGGGGATGGTTGTCTATGGCGTAGGAAGCATTGAGAATTATGAAAATCCTCGATTGCAGCTTAGTCTTGCAATATTGTTGAAGAGAAAATTTAGTTGGATTGAAAGTTTGGAGGTGTTTGATCCAATTCTTTCTGCAACTGAATGTCGATTAATGGAATCCTTTGGTTGTTCTGTTCTATCATTTAATGAACAAGGAAGACGATGTGCAGAGAAGCCAACAATGTTCTTCATGCCCCATTGTGAAGCAGAGTTGTACAACAATCTTTTACAGGAAAATTGGAAGGTTGGGCTGTTGAATCATATTGTGTTGTTTGGGAATAGCTTTGAGATTTATGAACAGTTTGTATCTGAATTCAAAAACTCACCCGTTGTTGATTCATCGAAGTTCATCTTGGCCTCAAGAAAGTTCATACGGGAGATCAAAATCAAGACAGTTTCAGATGATTATTTTGGTGCGTTTCATGATTCAAGTTGGCAATTTTTCAGCCCTGTTTCACCACTGGAGCTGCAATTCATAGATCTTTGA

Coding sequence (CDS)

ATGGCAGCGTCGGCAAAAACTGTCTCCATTCCAGATCAGTCAAATAGTGGGGACTGGACGGTTGTTCTTCCTCGTCGTGGCAAGCAGAAGAAAACTTTTCCGAAGCTCAGGATTCGAGAAGATCAACGGACTTGGTCTCCCACTGATCAGGCCAATGATACAATTAGAGAATCGAAACTGTTGCAGAAGATGGAAATCTGTATAAAAAAACTTGAGAATTCCCAATTTTATCAAACTCTTGTTGAGGAGCTTGAAACAATGCCATTCTTGGAATCGTTAAATAGGGTTTTGGGCTCGGAGTCAAAGATGGGGATGGTTGTCTATGGCGTAGGAAGCATTGAGAATTATGAAAATCCTCGATTGCAGCTTAGTCTTGCAATATTGTTGAAGAGAAAATTTAGTTGGATTGAAAGTTTGGAGGTGTTTGATCCAATTCTTTCTGCAACTGAATGTCGATTAATGGAATCCTTTGGTTGTTCTGTTCTATCATTTAATGAACAAGGAAGACGATGTGCAGAGAAGCCAACAATGTTCTTCATGCCCCATTGTGAAGCAGAGTTGTACAACAATCTTTTACAGGAAAATTGGAAGGTTGGGCTGTTGAATCATATTGTGTTGTTTGGGAATAGCTTTGAGATTTATGAACAGTTTGTATCTGAATTCAAAAACTCACCCGTTGTTGATTCATCGAAGTTCATCTTGGCCTCAAGAAAGTTCATACGGGAGATCAAAATCAAGACAGTTTCAGATGATTATTTTGGTGCGTTTCATGATTCAAGTTGGCAATTTTTCAGCCCTGTTTCACCACTGGAGCTGCAATTCATAGATCTTTGA

Protein sequence

MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKLLQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPRLQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFMPHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFIREIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL*

Homology

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BLAST of Cucsa.317650 vs. Swiss-Prot
Match: SRR1_ARATH (Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 SV=2)

HSP 1 Score: 275.0 bits (702), Expect = 8.9e-73
Identity = 135/261 (51.72%), Postives = 193/261 (73.95%), Query Frame = 1


Query: 9   SIPDQSNSGDWTVVLP---RRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKLLQKME 68
           ++ + S+ G+W VVLP   R+G+++K  PK +  E+++ W   D   D  R+++L QKME
Sbjct: 4   TVKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKME 63

Query: 69  ICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPRLQLSL 128
           I +KK+E+S FY   +E+L++      +  VLGSE+++ MV+YG+GSIE+YE+PR QLS+
Sbjct: 64  ISLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSI 123

Query: 129 AILLKRKFSWI-ESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFMPHCE 188
           AIL+KR+F W+ +++EVFDP+LSATE   +ES GCSVLS NEQ RR A KPT+FFMPHCE
Sbjct: 124 AILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCE 183

Query: 189 AELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFIREIK 248
           A LY+NLLQ NW++  L+ I LFGNSF++YE+ VS   ++ V+ ++K I+A+++   E  
Sbjct: 184 ANLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFA 243

Query: 249 IKTVSDDYFGAFHDSSWQFFS 266
           I+T SDDYF AFHDSSW FFS
Sbjct: 244 IETESDDYFAAFHDSSWHFFS 262

[Close]

BLAST of Cucsa.317650 vs. Swiss-Prot
Match: SRR1L_MOUSE (SRR1-like protein OS=Mus musculus GN=Srrd PE=2 SV=4)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-18
Identity = 73/218 (33.49%), Postives = 110/218 (50.46%), Query Frame = 1


Query: 19  WTVVLPRRGKQKKTFPKLRIREDQRTWSPTD--QANDTIRESKL-LQKMEICIKKLENSQ 78
           W+ V PRR K +    + R  E  R     D       +RE++  L+  + C   LE   
Sbjct: 9   WSAVAPRRRK-RAAGRRPRPGEGPRAEPEADGEAVLRRLREAEEDLRISDFCSSALET-- 68

Query: 79  FYQTLVEELETM-PFLESLNRV-LGSE-------------SKMGMVVYGVGSIENYENPR 138
             + L ++LE + P  E+L R+ LGS              S +  V YG+G+  +    R
Sbjct: 69  ITECLRKQLEQLQPLTEALGRLHLGSSLPSASQEPLASSASHVKCVCYGLGTFASCPTAR 128

Query: 139 LQLSLAILLKRKFSWIES-LEVFDPILSATECRLMESFGCSVLSFNEQGRRCAE-KPTMF 198
           +QL+  +L   K     S   V+DP+ S TE  ++ S G +VLS NE+G+R  + +PT+F
Sbjct: 129 IQLAFMLLFLEKCQVPRSHCWVYDPLFSQTEVSVLTSLGVTVLSENEEGKRSVQGQPTVF 188

Query: 199 FMPHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQ 217
           +MPHC   LYNNLL  NW    L+ +++ GNSF   E+
Sbjct: 189 YMPHCGTALYNNLLWSNWSADALSRVLIIGNSFRGLEE 223

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BLAST of Cucsa.317650 vs. Swiss-Prot
Match: SRR1L_HUMAN (SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-17
Identity = 64/177 (36.16%), Postives = 95/177 (53.67%), Query Frame = 1


Query: 106 VVYGVGSIENYENPRLQLSLAILLKRKFSWIES-LEVFDPILSATECRLMESFGCSVLSF 165
           V YG+G+       R QL+  +LL  K     S   V+DP+ S  E  ++ + G +VLS 
Sbjct: 142 VCYGIGNFATCIVARNQLTFLLLLLEKCQIPRSHCWVYDPLFSQLEIEVLNTLGVTVLSE 201

Query: 166 NEQGRRCAE-KPTMFFMPHCEAELYNNLLQENWKVGLLNHIVLFGNSFE-IYEQFVSEF- 225
           NE+G+R    +PT+F+M HC   LYNNLL  NW V  L+ +V+ GNSF+ + E+ ++   
Sbjct: 202 NEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSKMVIIGNSFKGLEERLLARIL 261

Query: 226 -KNSPVVDSSKFILASRKFIREIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 278
            KN P      +I    K + E++    S  Y   F+D+S  +F PV  LE   ID+
Sbjct: 262 QKNYP------YIAKILKGLEELEFPQTS-QYMDIFNDTSVHWF-PVQKLEQLSIDI 310

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BLAST of Cucsa.317650 vs. TrEMBL
Match: A0A0A0KRU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G457240 PE=4 SV=1)

HSP 1 Score: 557.0 bits (1434), Expect = 1.3e-155
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 1


Query: 1   MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 60
           MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL
Sbjct: 129 MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 188

Query: 61  LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 120
           LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR
Sbjct: 189 LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 248

Query: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 180
           LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM
Sbjct: 249 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 308

Query: 181 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 240
           PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI
Sbjct: 309 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 368

Query: 241 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 278
           REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL
Sbjct: 369 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 405

[Close]

BLAST of Cucsa.317650 vs. TrEMBL
Match: A5B9I4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012927 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 3.4e-95
Identity = 179/269 (66.54%), Postives = 214/269 (79.55%), Query Frame = 1


Query: 1   MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIRED-QRTWSPTDQANDTIRESK 60
           MAASAKT+++       DWTVVLP RGK ++ F K +  E  Q+ W+PTD   D  RESK
Sbjct: 1   MAASAKTITLESSDAISDWTVVLPXRGKXRRNFLKSKHPEQHQQPWAPTDLEMDLHRESK 60

Query: 61  LLQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENP 120
           L+QK++ICI+KL NS FY  L+++++T   LE+  RVLGSE KM MVVYG+GSIE+YE P
Sbjct: 61  LMQKIQICIRKLGNSTFYHVLLDQVQTPHMLEAFLRVLGSELKMQMVVYGIGSIESYEPP 120

Query: 121 RLQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFF 180
           RLQLSLAILLKRKFSWI  ++VFDPILSATE R++E+ GCSVLS NEQGRR A KPT+FF
Sbjct: 121 RLQLSLAILLKRKFSWIGDIKVFDPILSATESRVLEALGCSVLSVNEQGRRQASKPTLFF 180

Query: 181 MPHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKF 240
           MPHCEAELY+NLLQENW+   +N+IVLFGNSF  YEQ VSEF++S +VDSS+ ILA RKF
Sbjct: 181 MPHCEAELYDNLLQENWRTERMNNIVLFGNSFGTYEQHVSEFRSSTLVDSSRHILAVRKF 240

Query: 241 IREIKIKTVSDDYFGAFHDSSWQFFSPVS 269
            RE  IKTVSDDYFGAFHDSSW FFS V+
Sbjct: 241 TREFAIKTVSDDYFGAFHDSSWHFFSLVA 269

[Close]

BLAST of Cucsa.317650 vs. TrEMBL
Match: B9S4K4_RICCO (Protein SENSITIVITY TO RED LIGHT REDUCED, putative OS=Ricinus communis GN=RCOM_0809580 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 4.4e-95
Identity = 171/274 (62.41%), Postives = 221/274 (80.66%), Query Frame = 1


Query: 1   MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRI-REDQRTWSPTDQANDTIRESK 60
           M ASAK +++ + + +G+WTVVLP RGK+ + F K+R   E Q+ W P D  +D+ R+SK
Sbjct: 1   MDASAKILTVDNHTCNGEWTVVLP-RGKRSRNFSKIRTPEEQQQPWVPADLESDSNRQSK 60

Query: 61  LLQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENP 120
           L++KM IC+KK+ENSQFYQTL+E+++T   L+S ++VLGSE KM MV+YG+GSIE+YE P
Sbjct: 61  LIEKMNICMKKVENSQFYQTLLEQIQTPESLDSFHKVLGSELKMQMVIYGIGSIESYETP 120

Query: 121 RLQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFF 180
           R+QLS+AIL+K++FSWI  +EVFDP+LSATE R++E+ GCSVLS NE GRRC  +PT+F+
Sbjct: 121 RIQLSVAILMKKEFSWIGDIEVFDPVLSATESRVLEALGCSVLSVNEHGRRCVTRPTLFY 180

Query: 181 MPHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKF 240
           MPHCEAELYNNLLQ NW+V LLN I LFGNSFE+Y Q++SEF+NS +VDSS+ I+A R+F
Sbjct: 181 MPHCEAELYNNLLQANWRVELLNRIALFGNSFEVY-QYLSEFRNSTIVDSSRHIVAVREF 240

Query: 241 IREIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQ 274
             E  IKTVSDDYF AFHDSSW FFSP    ELQ
Sbjct: 241 THEYVIKTVSDDYFAAFHDSSWHFFSPDPKTELQ 272

[Close]

BLAST of Cucsa.317650 vs. TrEMBL
Match: W9R0F4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023959 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 5.8e-95
Identity = 176/278 (63.31%), Postives = 224/278 (80.58%), Query Frame = 1


Query: 1   MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQR--TWSPTDQANDTIRES 60
           MAASAKT++    S +G+WTVVLPRRG+ K+T P  R RE Q+  +W+PTD   +++RES
Sbjct: 1   MAASAKTLTAKTSSMNGEWTVVLPRRGR-KRTCPITRTREQQQPVSWAPTDFEVNSLRES 60

Query: 61  KLLQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYEN 120
           KL QKM+IC+KKLE SQF+ TL++++ +   ++  ++VLGSE KM MV+YG+GSIE+YEN
Sbjct: 61  KLKQKMQICMKKLETSQFFLTLLDQIRSPEIIQCFHKVLGSELKMQMVIYGIGSIESYEN 120

Query: 121 PRLQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMF 180
           PRLQLSLA+LLK KF WI  +EVFDPILSATE R++E  GCSVLS NEQGRR  +KPTM 
Sbjct: 121 PRLQLSLALLLKSKFGWIGDIEVFDPILSATESRVLEFLGCSVLSINEQGRRKVQKPTML 180

Query: 181 FMPHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRK 240
           FMPHCEAELY+NLLQENW++  LN++V+FGNSFE YEQFVSEFKNS V  S++ +L+++K
Sbjct: 181 FMPHCEAELYDNLLQENWRIEHLNNLVIFGNSFENYEQFVSEFKNSTVA-SARHMLSAQK 240

Query: 241 FIREIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFID 277
           F  E KI+TV DDYFGAFHDSSW FFSPV    LQ+++
Sbjct: 241 FTEEFKIQTVLDDYFGAFHDSSWHFFSPVIEPGLQYVN 276

[Close]

BLAST of Cucsa.317650 vs. TrEMBL
Match: M5VQP0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009752mg PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 8.3e-94
Identity = 175/275 (63.64%), Postives = 215/275 (78.18%), Query Frame = 1


Query: 1   MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRT--WSPTDQANDTIRES 60
           MAASAKT++    + +GDWTVV  RRG+Q++  PK+ IR  ++   W+PTD   +  RES
Sbjct: 1   MAASAKTLTAESHTLNGDWTVVSSRRGRQRRNPPKITIRVQKQPSHWAPTDLEINFARES 60

Query: 61  KLLQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYEN 120
           KL+QKM+IC+KKLE SQF+  L++E++T   +   +RVL SE KM MV+YG+GSIE+YE+
Sbjct: 61  KLMQKMQICMKKLEMSQFFLNLLDEIQTPEMMNYFHRVLSSELKMKMVIYGIGSIESYES 120

Query: 121 PRLQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMF 180
           PRLQLSLAILLKRKF+WI  +EVFDPILSATE R++E+  C VLS NEQGRR AEKPTMF
Sbjct: 121 PRLQLSLAILLKRKFNWIGDIEVFDPILSATESRVLEALECCVLSINEQGRRQAEKPTMF 180

Query: 181 FMPHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRK 240
           FMPHCEAELY+NLLQ NW+  LLN  VLFGNSFE YEQ +SE+KNS +VDS++ ILA RK
Sbjct: 181 FMPHCEAELYDNLLQANWEARLLNCTVLFGNSFETYEQHLSEYKNSAIVDSTRHILAVRK 240

Query: 241 FIREIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQ 274
           F  E +IKT+SD YF AFHDSSW FF PV   ELQ
Sbjct: 241 FTDEFRIKTISDTYFSAFHDSSWHFFRPVLETELQ 275

[Close]

BLAST of Cucsa.317650 vs. TAIR10
Match: AT5G59560.1 (AT5G59560.1 sensitivity to red light reduced protein (SRR1))

HSP 1 Score: 275.0 bits (702), Expect = 5.0e-74
Identity = 135/261 (51.72%), Postives = 193/261 (73.95%), Query Frame = 1


Query: 9   SIPDQSNSGDWTVVLP---RRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKLLQKME 68
           ++ + S+ G+W VVLP   R+G+++K  PK +  E+++ W   D   D  R+++L QKME
Sbjct: 4   TVKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKME 63

Query: 69  ICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPRLQLSL 128
           I +KK+E+S FY   +E+L++      +  VLGSE+++ MV+YG+GSIE+YE+PR QLS+
Sbjct: 64  ISLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSI 123

Query: 129 AILLKRKFSWI-ESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFMPHCE 188
           AIL+KR+F W+ +++EVFDP+LSATE   +ES GCSVLS NEQ RR A KPT+FFMPHCE
Sbjct: 124 AILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCE 183

Query: 189 AELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFIREIK 248
           A LY+NLLQ NW++  L+ I LFGNSF++YE+ VS   ++ V+ ++K I+A+++   E  
Sbjct: 184 ANLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFA 243

Query: 249 IKTVSDDYFGAFHDSSWQFFS 266
           I+T SDDYF AFHDSSW FFS
Sbjct: 244 IETESDDYFAAFHDSSWHFFS 262

[Close]

BLAST of Cucsa.317650 vs. NCBI nr
Match: gi|449452014|ref|XP_004143755.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis sativus])

HSP 1 Score: 557.0 bits (1434), Expect = 1.9e-155
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 1


Query: 1   MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 60
           MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL
Sbjct: 1   MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 120
           LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR
Sbjct: 61  LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 180
           LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 180

Query: 181 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 240
           PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI
Sbjct: 181 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 240

Query: 241 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 278
           REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL
Sbjct: 241 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 277

[Close]

BLAST of Cucsa.317650 vs. NCBI nr
Match: gi|700195945|gb|KGN51122.1| (hypothetical protein Csa_5G457240 [Cucumis sativus])

HSP 1 Score: 557.0 bits (1434), Expect = 1.9e-155
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 1


Query: 1   MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 60
           MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL
Sbjct: 129 MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 188

Query: 61  LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 120
           LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR
Sbjct: 189 LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 248

Query: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 180
           LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM
Sbjct: 249 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 308

Query: 181 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 240
           PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI
Sbjct: 309 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 368

Query: 241 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 278
           REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL
Sbjct: 369 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 405

[Close]

BLAST of Cucsa.317650 vs. NCBI nr
Match: gi|659072440|ref|XP_008465606.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis melo])

HSP 1 Score: 525.4 bits (1352), Expect = 6.0e-146
Identity = 258/277 (93.14%), Postives = 270/277 (97.47%), Query Frame = 1


Query: 1   MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 60
           MAASAKTV+IPDQSN+GDWTVVLPRRGKQ+K FPKLR REDQRTWSPTDQANDTIRESKL
Sbjct: 1   MAASAKTVAIPDQSNNGDWTVVLPRRGKQRKNFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 120
           LQKME+CIKKLE+SQFY+TLVEELET+PFLESLNRVL SESKMG+V+YGVGSIENYENPR
Sbjct: 61  LQKMEMCIKKLESSQFYRTLVEELETVPFLESLNRVLDSESKMGVVIYGVGSIENYENPR 120

Query: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 180
           LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLS NEQGRRCAEKPTMFFM
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAEKPTMFFM 180

Query: 181 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 240
           PHCEAELYNNLLQENWKV LLNHI+LFGNSFEIYEQFVSEFKNSPVVDSS FILASRKF+
Sbjct: 181 PHCEAELYNNLLQENWKVKLLNHIMLFGNSFEIYEQFVSEFKNSPVVDSSNFILASRKFV 240

Query: 241 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFIDL 278
           REIKIKTVSDDYFGAFHDSSW FFSPVSPLEL+FIDL
Sbjct: 241 REIKIKTVSDDYFGAFHDSSWHFFSPVSPLELKFIDL 277

[Close]

BLAST of Cucsa.317650 vs. NCBI nr
Match: gi|225435979|ref|XP_002271597.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Vitis vinifera])

HSP 1 Score: 359.4 bits (921), Expect = 5.7e-96
Identity = 180/269 (66.91%), Postives = 216/269 (80.30%), Query Frame = 1


Query: 1   MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIRED-QRTWSPTDQANDTIRESK 60
           MAASAKT+++       DWTVVLPRRGK+++ F K +  E  Q+ W+PTD   D  RESK
Sbjct: 1   MAASAKTITLESSDAISDWTVVLPRRGKRRRNFLKSKHPEQHQQPWAPTDLEMDLHRESK 60

Query: 61  LLQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENP 120
           L+QK++ICI+KL NS FY  L+++++T   LE+  RVLGSE KM MVVYG+GSIE+YE P
Sbjct: 61  LMQKIQICIRKLGNSTFYHVLLDQVQTPHMLEAFLRVLGSELKMQMVVYGIGSIESYEPP 120

Query: 121 RLQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFF 180
           RLQLSLAILLKRKFSWI  ++VFDPILSATE R++E+ GCSVLS NEQGRR A KPT+FF
Sbjct: 121 RLQLSLAILLKRKFSWIGDIKVFDPILSATESRVLEALGCSVLSVNEQGRRQASKPTLFF 180

Query: 181 MPHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKF 240
           MPHCEAELY+NLLQENW+   +N+IVLFGNSF  YEQ VSEF++S +VDSS+ ILA RKF
Sbjct: 181 MPHCEAELYDNLLQENWRTERMNNIVLFGNSFGTYEQHVSEFRSSTLVDSSRHILAVRKF 240

Query: 241 IREIKIKTVSDDYFGAFHDSSWQFFSPVS 269
            RE  IKTVSDDYFGAFHDSSW FFS V+
Sbjct: 241 TREFAIKTVSDDYFGAFHDSSWHFFSLVA 269

[Close]

BLAST of Cucsa.317650 vs. NCBI nr
Match: gi|1009175277|ref|XP_015868794.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Ziziphus jujuba])

HSP 1 Score: 356.7 bits (914), Expect = 3.7e-95
Identity = 172/274 (62.77%), Postives = 220/274 (80.29%), Query Frame = 1


Query: 1   MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTF-----PKLRIREDQRT--WSPTDQAND 60
           MAASAKT+++ + S +G+W +VLPRR +++KT      P+   ++ Q++  W+P+D  +D
Sbjct: 1   MAASAKTLTVENPSLNGEWKIVLPRRARRRKTSLGAKSPQQPQQQQQQSSSWAPSDFESD 60

Query: 61  TIRESKLLQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSI 120
            IRESKLLQKM+IC+KKLE SQF+ TL+++++T    +  +R+LGSESKM MV+YG+GSI
Sbjct: 61  IIRESKLLQKMQICMKKLEVSQFFLTLLDQIQTPEISDCFHRILGSESKMKMVIYGIGSI 120

Query: 121 ENYENPRLQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAE 180
           E+YE+PRLQLSLAILL++KF+WI  +EVFDP+LSATE R++E+ GCSVLS NEQGRR A+
Sbjct: 121 ESYESPRLQLSLAILLRKKFNWIGEIEVFDPVLSATEARVLEALGCSVLSINEQGRRLAQ 180

Query: 181 KPTMFFMPHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFI 240
            PT+FFMPHCEAELYNNLLQ NW+VG LNHI LFGNSFE YEQ  S FKNS V +S+K I
Sbjct: 181 NPTLFFMPHCEAELYNNLLQSNWEVGFLNHIALFGNSFETYEQHFSVFKNSKVAESAKHI 240

Query: 241 LASRKFIREIKIKTVSDDYFGAFHDSSWQFFSPV 268
           L  RKF  E +I+TVSDDYF AFHDSSW FF PV
Sbjct: 241 LGVRKFTEEFRIQTVSDDYFAAFHDSSWHFFRPV 274

The following BLAST results are available for this feature:

BLAST of Cucsa.317650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRR1_ARATH	8.9e-73	51.72	Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 ...	[more]
SRR1L_MOUSE	1.3e-18	33.49	SRR1-like protein OS=Mus musculus GN=Srrd PE=2 SV=4	[more]
SRR1L_HUMAN	1.8e-17	36.16	SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=1	[more]

BLAST of Cucsa.317650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRU2_CUCSA	1.3e-155	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G457240 PE=4 SV=1	[more]
A5B9I4_VITVI	3.4e-95	66.54	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012927 PE=4 SV=1	[more]
B9S4K4_RICCO	4.4e-95	62.41	Protein SENSITIVITY TO RED LIGHT REDUCED, putative OS=Ricinus communis GN=RCOM_0...	[more]
W9R0F4_9ROSA	5.8e-95	63.31	Uncharacterized protein OS=Morus notabilis GN=L484_023959 PE=4 SV=1	[more]
M5VQP0_PRUPE	8.3e-94	63.64	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009752mg PE=4 SV=1	[more]

BLAST of Cucsa.317650 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59560.1	5.0e-74	51.72	sensitivity to red light reduced protein (SRR1)	[more]

BLAST of Cucsa.317650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452014\|ref\|XP_004143755.1\|	1.9e-155	100.00	PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis sativus]	[more]
gi\|700195945\|gb\|KGN51122.1\|	1.9e-155	100.00	hypothetical protein Csa_5G457240 [Cucumis sativus]	[more]
gi\|659072440\|ref\|XP_008465606.1\|	6.0e-146	93.14	PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucumis melo]	[more]
gi\|225435979\|ref\|XP_002271597.1\|	5.7e-96	66.91	PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Vitis vinifera]	[more]
gi\|1009175277\|ref\|XP_015868794.1\|	3.7e-95	62.77	PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012942	SRR1-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007623	circadian rhythm
biological_process	GO:0010017	red or far-red light signaling pathway
biological_process	GO:0008150	biological_process
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.317650.1	Cucsa.317650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012942	Sensitivity To Red Light Reduced-like, SRR1	PFAM	PF07985	SRR1	coord: 105..157 score: 1.1
None	No IPR available	PANTHER	PTHR28626	FAMILY NOT NAMED	coord: 9..266 score: 2.0
None	No IPR available	PANTHER	PTHR28626:SF3	SRR1-LIKE PROTEIN	coord: 9..266 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.317650	Cla005918	Watermelon (97103) v1	cgywmB579
Cucsa.317650	Csa5G457240	Cucumber (Chinese Long) v2	cgycuB455
Cucsa.317650	MELO3C005120	Melon (DHL92) v3.5.1	cgymeB523
Cucsa.317650	ClCG01G007760	Watermelon (Charleston Gray)	cgywcgB550
Cucsa.317650	CSPI05G15800	Wild cucumber (PI 183967)	cgycpiB480
Cucsa.317650	CmaCh15G008190	Cucurbita maxima (Rimu)	cgycmaB0879
Cucsa.317650	CmaCh04G022150	Cucurbita maxima (Rimu)	cgycmaB0880
Cucsa.317650	CmoCh04G023160	Cucurbita moschata (Rifu)	cgycmoB0877
Cucsa.317650	CmoCh15G008450	Cucurbita moschata (Rifu)	cgycmoB0876
Cucsa.317650	Lsi09G008180	Bottle gourd (USVL1VR-Ls)	cgylsiB519
Cucsa.317650	Cp4.1LG13g05890	Cucurbita pepo (Zucchini)	cgycpeB0835
Cucsa.317650	Cp4.1LG01g19230	Cucurbita pepo (Zucchini)	cgycpeB0836
Cucsa.317650	MELO3C005120.2	Melon (DHL92) v3.6.1	cgymedB524
Cucsa.317650	CsaV3_5G024840	Cucumber (Chinese Long) v3	cgycucB494
Cucsa.317650	Bhi12G000957	Wax gourd	cgywgoB637
Cucsa.317650	Carg17748	Silver-seed gourd	carcgyB0550
Cucsa.317650	Carg01388	Silver-seed gourd	carcgyB0953

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.317650	Watermelon (97103) v2	cgywmbB555