Lsi07G007210 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G007210
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	NDH subunit NdhS
Location	chr07 : 7802123 .. 7802848 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCCATCTCCCTTCCAACTCCCCAATCTCCGCTTCTCAAATCCACTTTCCTCGGCCAAAACCGCCACCGCTTCCTTCTTCACCGCCCATTCCCCTTTCCCCGCCGCGCATCACCAAACCATCACGCTTTCCGGCCCTCCGCCGCCTTTGATTTGGCCCAGCTTCTAGGCGGAAGAGGCCTCTGCAATGGCGAGCGAGGTTTGAAAGAGGAACTCAAGAGAAACGTCCAGGAGATTCCCGCAGAAATCGACGCCGATGGAGGTGAAATTCCAGAAACCTCCGAGAAATTAGCCGTCGATAAGGTTCCGGAAGATGGATTCGAGAAGGAATTGATGGGGTTAACCGGTGGATTTCCTGGCGGAGAGAAGGGATTGAAAAAATTCATATCAGAAAATCCTCCTCCTCCGAAGCCTTCCGCTTCAAATCCCGGCGAAACCAGTGCGATTCTGAGTTCGCAGAAACCAAAGCCGCCGGATCTGCCGCTGTTGCTGCCGGGAATGATCGCAATCGTGAAGAATCCGAACAATCCGTACTACATGTATTGTGGAATCGTTCAGAGAATCACAGATGGAAAGGCTGGGGTTCTTTTTGAAGGAGGAAACTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAACCCTAGATCGGCTGTTCTTGAACCGCTTCTTCAAAATGATTCCCAATGA

mRNA sequence

ATGGCTTCCTCCATCTCCCTTCCAACTCCCCAATCTCCGCTTCTCAAATCCACTTTCCTCGGCCAAAACCGCCACCGCTTCCTTCTTCACCGCCCATTCCCCTTTCCCCGCCGCGCATCACCAAACCATCACGCTTTCCGGCCCTCCGCCGCCTTTGATTTGGCCCAGCTTCTAGGCGGAAGAGGCCTCTGCAATGGCGAGCGAGGTTTGAAAGAGGAACTCAAGAGAAACGTCCAGGAGATTCCCGCAGAAATCGACGCCGATGGAGGTGAAATTCCAGAAACCTCCGAGAAATTAGCCGTCGATAAGGTTCCGGAAGATGGATTCGAGAAGGAATTGATGGGGTTAACCGGTGGATTTCCTGGCGGAGAGAAGGGATTGAAAAAATTCATATCAGAAAATCCTCCTCCTCCGAAGCCTTCCGCTTCAAATCCCGGCGAAACCAGTGCGATTCTGAGTTCGCAGAAACCAAAGCCGCCGGATCTGCCGCTGTTGCTGCCGGGAATGATCGCAATCGTGAAGAATCCGAACAATCCGTACTACATGTATTGTGGAATCGTTCAGAGAATCACAGATGGAAAGGCTGGGGTTCTTTTTGAAGGAGGAAACTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAACCCTAGATCGGCTGTTCTTGAACCGCTTCTTCAAAATGATTCCCAATGA

Coding sequence (CDS)

ATGGCTTCCTCCATCTCCCTTCCAACTCCCCAATCTCCGCTTCTCAAATCCACTTTCCTCGGCCAAAACCGCCACCGCTTCCTTCTTCACCGCCCATTCCCCTTTCCCCGCCGCGCATCACCAAACCATCACGCTTTCCGGCCCTCCGCCGCCTTTGATTTGGCCCAGCTTCTAGGCGGAAGAGGCCTCTGCAATGGCGAGCGAGGTTTGAAAGAGGAACTCAAGAGAAACGTCCAGGAGATTCCCGCAGAAATCGACGCCGATGGAGGTGAAATTCCAGAAACCTCCGAGAAATTAGCCGTCGATAAGGTTCCGGAAGATGGATTCGAGAAGGAATTGATGGGGTTAACCGGTGGATTTCCTGGCGGAGAGAAGGGATTGAAAAAATTCATATCAGAAAATCCTCCTCCTCCGAAGCCTTCCGCTTCAAATCCCGGCGAAACCAGTGCGATTCTGAGTTCGCAGAAACCAAAGCCGCCGGATCTGCCGCTGTTGCTGCCGGGAATGATCGCAATCGTGAAGAATCCGAACAATCCGTACTACATGTATTGTGGAATCGTTCAGAGAATCACAGATGGAAAGGCTGGGGTTCTTTTTGAAGGAGGAAACTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAACCCTAGATCGGCTGTTCTTGAACCGCTTCTTCAAAATGATTCCCAATGA

Protein sequence

MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFPFPRRASPNHHAFRPSAAFDLAQLLGGRGLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVDKVPEDGFEKELMGLTGGFPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQNDSQ

Homology

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BLAST of Lsi07G007210 vs. Swiss-Prot
Match: NDHS_ARATH (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana GN=ndhS PE=1 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.6e-73
Identity = 141/239 (59.00%), Postives = 181/239 (75.73%), Query Frame = 1


Query: 3   SSISLPTPQSPLLKSTFLGQNRHRFLLHRP-FPFPRRASPNHHAFRPSAAFDLAQLLGGR 62
           SSI++PT ++P+ +S FLGQ      ++R  FP P++ S  +   +    F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVD-KVPEDGFEKELMGLTGGF 122
           GLCNGE+G+++EL+RN+++      A+  E    S+   +  KVPEDGFEKE+MGLTGGF
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGGF 123

Query: 123 PGGEKGLKKFISENPPPPKPS--ASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNN 182
           PGGEKGLK FI +NPPPP P   A    + SA+ + +KPK P LPLL+PGMIAIVKN N+
Sbjct: 124 PGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQNS 183

Query: 183 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 238
           PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEPL++
Sbjct: 184 PYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 241

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BLAST of Lsi07G007210 vs. TrEMBL
Match: A0A0A0KV29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052580 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 2.2e-106
Identity = 199/238 (83.61%), Postives = 212/238 (89.08%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFPFP-RRASPNHHAFRPSAAFDLAQLLG 60
           MASSISLP+PQ+PLLKS+FL QNR R LLHRPFP P R AS   HAFRPSAAFDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVDKVPEDGFEKELMGLTGG 120
           GRGLCNGE+GLKEELKRNV + P  + ADG EIP TS+KL VD VPEDGFEKELMGLTGG
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNP--VLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 122

Query: 121 FPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGLKKFISENPPP KPSAS  GE  +I+++QKPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 123 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 238
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SA   PLL+
Sbjct: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 238

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BLAST of Lsi07G007210 vs. TrEMBL
Match: M5WAD8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010487mg PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.5e-78
Identity = 157/249 (63.05%), Postives = 189/249 (75.90%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFPFPRRASPNHHAFRPSAAFDLAQLLGG 60
           MAS+I+LP+ Q PLLKS FLG+N      H+   F     P+ H+ RP A F+L+++LGG
Sbjct: 1   MASNITLPSFQGPLLKSNFLGRNDLSNRAHKS-SFTIHKQPSIHSLRPCAKFNLSEILGG 60

Query: 61  RGLCNGERGLKEELKRNVQE-------IPAEIDADGGEIP-ETSEKLAVDKVPEDGFEKE 120
           RGLCNGE GL +EL RNV+E       + A + A+  E   ++S   A+  V ED FEKE
Sbjct: 61  RGLCNGEEGLLQELTRNVEEQKDVEEQVSAAVAAETDEEKSDSSSASALKSVQEDAFEKE 120

Query: 121 LMGLTGGFPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAI 180
           LMGLTGGFPGGEKGL+KFI +NPPP KP  ++ G T+A++SS+KPK P+LPLLLPGMIAI
Sbjct: 121 LMGLTGGFPGGEKGLQKFIEKNPPPKKPLVADSGSTAALVSSKKPKAPELPLLLPGMIAI 180

Query: 181 VKNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVL 240
           V NPN+PYY YCGIVQRITDGKAGVLFEGGNWDRLITFRL EL RR+KGPP KNP+SAVL
Sbjct: 181 VNNPNSPYYKYCGIVQRITDGKAGVLFEGGNWDRLITFRLGELLRRDKGPPGKNPKSAVL 240

Query: 241 EPLLQNDSQ 242
           EP LQ DS+
Sbjct: 241 EPFLQKDSE 248

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BLAST of Lsi07G007210 vs. TrEMBL
Match: A0A061G593_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_016470 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 1.0e-76
Identity = 157/243 (64.61%), Postives = 183/243 (75.31%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFP--FPRRASPNHHAFRPSAAFDLAQLL 60
           MASSI+LP+ Q  LL+S FLGQN    + HRP    FP    P        A FDL ++L
Sbjct: 1   MASSITLPSLQGSLLRSRFLGQNP---ISHRPHKSAFPVVKQPKTFC----AKFDLFEIL 60

Query: 61  GGRGLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVDKVPEDGFEKELMGLTG 120
           GGRGLCNGE+GL+ ELKRNV E  +    D     + S   A+  VPED FEKELMGLTG
Sbjct: 61  GGRGLCNGEKGLEVELKRNVLEASSPATKD----EQRSGSTAI-SVPEDAFEKELMGLTG 120

Query: 121 GFPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNN 180
           GFPGGEKGLKKF+ ENPPP K S S+    + + +++KPKPP+LPLL+PGMIAIVKNPNN
Sbjct: 121 GFPGGEKGLKKFVEENPPPAKQSVSDSVSIARLAATKKPKPPELPLLMPGMIAIVKNPNN 180

Query: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQN 240
           P+YMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNP+SAVLE +L+ 
Sbjct: 181 PFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPKSAVLEAMLEK 231

Query: 241 DSQ 242
           D +
Sbjct: 241 DQK 231

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BLAST of Lsi07G007210 vs. TrEMBL
Match: A0A067GD15_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044915mg PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 7.5e-75
Identity = 144/238 (60.50%), Postives = 185/238 (77.73%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPF-PFPRRASPNHHAFRPSAAFDLAQLLG 60
           MASSI+L T Q PLL+S FLGQN+  +   +P+   P++ S      +P A FDL +++G
Sbjct: 1   MASSINLHTLQGPLLQSHFLGQNQVSYRPKKPYLATPKQPST---VLKPCAKFDLFEIMG 60

Query: 61  GRGLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVDKVPEDGFEKELMGLTGG 120
           GRGLCNGE+G++ ELKRNV E  +++     E   ++   +   VPED FEKE+MGLTGG
Sbjct: 61  GRGLCNGEKGIELELKRNVTEQESQVADKEEESSASTAMPSTLSVPEDAFEKEMMGLTGG 120

Query: 121 FPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGL++FI +NPPP KP  ++ G+  A+ +++KPKPP+ PLL+PGM AIVKNPNNP
Sbjct: 121 FPGGEKGLQQFIEQNPPPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 238
           +YMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPP +NP+SAVLE +++
Sbjct: 181 FYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLEGMIK 235

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BLAST of Lsi07G007210 vs. TrEMBL
Match: A0A0F7CYV7_9ROSI (Chlororespiratory reduction31 OS=Pelargonium tetragonum GN=NDHS PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.2e-74
Identity = 150/244 (61.48%), Postives = 186/244 (76.23%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFPFPRRASPNHHAFRPSAAFDLAQLLGG 60
           MASSI+LPT Q P LKS F G+   + L      FP++ S +    + SA F+L ++LGG
Sbjct: 1   MASSITLPTLQGPQLKSQFFGR---KILPTTSLKFPKQRSTDFP--KTSAKFNLFEILGG 60

Query: 61  RGLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSE---KLAVDKVPEDGFEKELMGLT 120
           RGLCNGE G++EELK++++   A   A   E  ++     K ++  VP +GF+KELMGLT
Sbjct: 61  RGLCNGEEGIQEELKKSIENQTASPPAAATETEQSENSDSKNSIGNVPGEGFDKELMGLT 120

Query: 121 GGFPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPN 180
           GGFPGGE GL+KFI ENPPPPK SA+   +T ++ +S+K K P+LPLL+PGMIAIVKNPN
Sbjct: 121 GGFPGGETGLRKFIEENPPPPKSSAA-ANKTVSLATSKKAKAPELPLLMPGMIAIVKNPN 180

Query: 181 NPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 240
           NP+YMYCGIVQRITDG+AGVLFEGGNWDRL+TFRLEELERREKGPP KNP+SAVLE LL+
Sbjct: 181 NPFYMYCGIVQRITDGRAGVLFEGGNWDRLVTFRLEELERREKGPPAKNPKSAVLEALLE 238

Query: 241 NDSQ 242
            DSQ
Sbjct: 241 KDSQ 238

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BLAST of Lsi07G007210 vs. TAIR10
Match: AT4G23890.1 (AT4G23890.1 unknown protein)

HSP 1 Score: 277.3 bits (708), Expect = 8.8e-75
Identity = 141/239 (59.00%), Postives = 181/239 (75.73%), Query Frame = 1


Query: 3   SSISLPTPQSPLLKSTFLGQNRHRFLLHRP-FPFPRRASPNHHAFRPSAAFDLAQLLGGR 62
           SSI++PT ++P+ +S FLGQ      ++R  FP P++ S  +   +    F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVD-KVPEDGFEKELMGLTGGF 122
           GLCNGE+G+++EL+RN+++      A+  E    S+   +  KVPEDGFEKE+MGLTGGF
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGGF 123

Query: 123 PGGEKGLKKFISENPPPPKPS--ASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNN 182
           PGGEKGLK FI +NPPPP P   A    + SA+ + +KPK P LPLL+PGMIAIVKN N+
Sbjct: 124 PGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQNS 183

Query: 183 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 238
           PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEPL++
Sbjct: 184 PYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 241

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BLAST of Lsi07G007210 vs. NCBI nr
Match: gi|659102099|ref|XP_008451952.1| (PREDICTED: uncharacterized protein LOC103493099 [Cucumis melo])

HSP 1 Score: 412.1 bits (1058), Expect = 6.5e-112
Identity = 207/242 (85.54%), Postives = 218/242 (90.08%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFPFP-RRASPNHHAFRPSAAFDLAQLLG 60
           MASSISLP+PQ+PLLKS+FL QNR R LLHRPFP P R AS  HHAFRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVDKVPEDGFEKELMGLTGG 120
           GRGLCNGERG++EELKRNV + P  + ADG EIPETS KL VD VPEDGFEKELMGLTGG
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNP--VIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGG 120

Query: 121 FPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGLKKFISENPPP KPSAS  GE  +IL+++KPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 121 FPGGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQND 240
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEP LQ D
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKD 240

Query: 241 SQ 242
           SQ
Sbjct: 241 SQ 240

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BLAST of Lsi07G007210 vs. NCBI nr
Match: gi|449462539|ref|XP_004148998.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 409.1 bits (1050), Expect = 5.5e-111
Identity = 206/242 (85.12%), Postives = 218/242 (90.08%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFPFP-RRASPNHHAFRPSAAFDLAQLLG 60
           MASSISLP+PQ+PLLKS+FL QNR R LLHRPFP P R AS   HAFRPSAAFDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVDKVPEDGFEKELMGLTGG 120
           GRGLCNGE+GLKEELKRNV + P  + ADG EIP TS+KL VD VPEDGFEKELMGLTGG
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNP--VLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 122

Query: 121 FPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGLKKFISENPPP KPSAS  GE  +I+++QKPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 123 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQND 240
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEPLLQ D
Sbjct: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD 242

Query: 241 SQ 242
           SQ
Sbjct: 243 SQ 242

[Close]

BLAST of Lsi07G007210 vs. NCBI nr
Match: gi|700198250|gb|KGN53408.1| (hypothetical protein Csa_4G052580 [Cucumis sativus])

HSP 1 Score: 393.3 bits (1009), Expect = 3.1e-106
Identity = 199/238 (83.61%), Postives = 212/238 (89.08%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFPFP-RRASPNHHAFRPSAAFDLAQLLG 60
           MASSISLP+PQ+PLLKS+FL QNR R LLHRPFP P R AS   HAFRPSAAFDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVDKVPEDGFEKELMGLTGG 120
           GRGLCNGE+GLKEELKRNV + P  + ADG EIP TS+KL VD VPEDGFEKELMGLTGG
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNP--VLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 122

Query: 121 FPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGLKKFISENPPP KPSAS  GE  +I+++QKPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 123 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 238
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SA   PLL+
Sbjct: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 238

[Close]

BLAST of Lsi07G007210 vs. NCBI nr
Match: gi|764581342|ref|XP_011463986.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 312.0 bits (798), Expect = 9.1e-82
Identity = 165/248 (66.53%), Postives = 193/248 (77.82%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRP-FPFPRRASPNHHAFRPSAAFDLAQLLG 60
           MAS+ISLP+ Q+PLLKS FLG+N H  L  +P F   RR SP+H   R  A F+L ++LG
Sbjct: 45  MASNISLPSFQNPLLKSNFLGRNDHSNLAPKPCFTVQRRPSPHH--LRTYAKFNLFEILG 104

Query: 61  GRGLCNGERGLKEELKRNVQE-IPAEID-----ADGGEIPETSEKLAVDKVPEDGFEKEL 120
           GRGL NGERG+++EL RNV+E  PA +      A+G E  E S   A+D   E  FEKEL
Sbjct: 105 GRGLLNGERGVEKELTRNVEEQAPAAVGDETEKAEGEEQSEGSAIAAIDSAQEAAFEKEL 164

Query: 121 MGLTGGFPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIV 180
           MGLTGGFPGGE GL+KFI +NPPP KP A+  G T+ ++SS+KPK P+LP+LLPGMIAIV
Sbjct: 165 MGLTGGFPGGETGLRKFIEKNPPPKKPPAAESGATAVLVSSKKPKAPELPILLPGMIAIV 224

Query: 181 KNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLE 240
            NPNNPY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEEL RREKGPP KNPRSA+LE
Sbjct: 225 SNPNNPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELTRREKGPPGKNPRSAILE 284

Query: 241 PLLQNDSQ 242
           PLLQ DS+
Sbjct: 285 PLLQKDSE 290

[Close]

BLAST of Lsi07G007210 vs. NCBI nr
Match: gi|694354985|ref|XP_009358605.1| (PREDICTED: uncharacterized protein LOC103949228 [Pyrus x bretschneideri])

HSP 1 Score: 302.4 bits (773), Expect = 7.2e-79
Identity = 158/249 (63.45%), Postives = 188/249 (75.50%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFPFPRRASPNHHAFRPSAAFDLAQLLGG 60
           MASSI+LP+ Q PLLKS FLG+N      H+   F     P+ H+ RPSA F+L+++LGG
Sbjct: 1   MASSITLPSLQGPLLKSNFLGRNDLSNRAHKS-SFAVHKQPSTHSLRPSAKFNLSEILGG 60

Query: 61  RGLCNGERGLKEELKRNVQEIP----AEIDADGG-----EIPETSEKLAVDKVPEDGFEK 120
           RGLCNGE GL +EL RNV+E       ++ A        E P+ S   A++ V EDGF+K
Sbjct: 61  RGLCNGEAGLLQELTRNVEEQKNVEEEQVSAAAAAKTEEEKPDGSATAAIESVEEDGFDK 120

Query: 121 ELMGLTGGFPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIA 180
           ELMGLTGGFPGGEKGL+KFI +NPPP K S +  G T+A++S++KPK P+LPLLLPGMIA
Sbjct: 121 ELMGLTGGFPGGEKGLRKFIEKNPPPKKSSIAISGSTAALVSTKKPKAPELPLLLPGMIA 180

Query: 181 IVKNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAV 240
           IV NPN+PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRL EL RR+KGPP KNP+S V
Sbjct: 181 IVNNPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLGELMRRDKGPPGKNPKSCV 240

The following BLAST results are available for this feature:

BLAST of Lsi07G007210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDHS_ARATH	1.6e-73	59.00	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of Lsi07G007210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV29_CUCSA	2.2e-106	83.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052580 PE=4 SV=1	[more]
M5WAD8_PRUPE	2.5e-78	63.05	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010487mg PE=4 SV=1	[more]
A0A061G593_THECC	1.0e-76	64.61	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_016470 PE=4 SV=1	[more]
A0A067GD15_CITSI	7.5e-75	60.50	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044915mg PE=4 SV=1	[more]
A0A0F7CYV7_9ROSI	2.2e-74	61.48	Chlororespiratory reduction31 OS=Pelargonium tetragonum GN=NDHS PE=2 SV=1	[more]

BLAST of Lsi07G007210 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23890.1	8.8e-75	59.00	unknown protein	[more]

BLAST of Lsi07G007210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102099\|ref\|XP_008451952.1\|	6.5e-112	85.54	PREDICTED: uncharacterized protein LOC103493099 [Cucumis melo]	[more]
gi\|449462539\|ref\|XP_004148998.1\|	5.5e-111	85.12	PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X1 [C...	[more]
gi\|700198250\|gb\|KGN53408.1\|	3.1e-106	83.61	hypothetical protein Csa_4G052580 [Cucumis sativus]	[more]
gi\|764581342\|ref\|XP_011463986.1\|	9.1e-82	66.53	PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Fragaria ves...	[more]
gi\|694354985\|ref\|XP_009358605.1\|	7.2e-79	63.45	PREDICTED: uncharacterized protein LOC103949228 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021659	NdhS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0065007	biological regulation
biological_process	GO:0006812	cation transport
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016020	membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G007210.1	Lsi07G007210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021659	Protein of unknown function DUF3252	PFAM	PF11623	DUF3252	coord: 165..216 score: 9.7
None	No IPR available	PANTHER	PTHR35494	FAMILY NOT NAMED	coord: 1..241 score: 5.9E
None	No IPR available	PANTHER	PTHR35494:SF1	SUBFAMILY NOT NAMED	coord: 1..241 score: 5.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G007210	Csa4G052580	Cucumber (Chinese Long) v2	culsiB304
Lsi07G007210	CSPI04G06400	Wild cucumber (PI 183967)	cpilsiB304
Lsi07G007210	Cucsa.114990	Cucumber (Gy14) v1	cgylsiB161
Lsi07G007210	CmaCh04G006860	Cucurbita maxima (Rimu)	cmalsiB699
Lsi07G007210	CmoCh04G007310	Cucurbita moschata (Rifu)	cmolsiB693
Lsi07G007210	Cla012805	Watermelon (97103) v1	lsiwmB434
Lsi07G007210	MELO3C016296	Melon (DHL92) v3.5.1	lsimeB450
Lsi07G007210	ClCG07G011600	Watermelon (Charleston Gray)	lsiwcgB412
Lsi07G007210	MELO3C016296.2	Melon (DHL92) v3.6.1	lsimedB473
Lsi07G007210	Cla97C07G138340	Watermelon (97103) v2	lsiwmbB411
Lsi07G007210	Bhi01G002301	Wax gourd	lsiwgoB544
Lsi07G007210	Cp4.1LG01g00550	Cucurbita pepo (Zucchini)	cpelsiB378
Lsi07G007210	CsGy4G006320	Cucumber (Gy14) v2	cgyblsiB278
Lsi07G007210	Carg13072	Silver-seed gourd	carlsiB040
Lsi07G007210	CsaV3_4G006610	Cucumber (Chinese Long) v3	cuclsiB323

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G007210	Cucurbita pepo (Zucchini)	cpelsiB157
Lsi07G007210	Cucurbita pepo (Zucchini)	cpelsiB184
Lsi07G007210	Wild cucumber (PI 183967)	cpilsiB391
Lsi07G007210	Cucumber (Chinese Long) v2	culsiB387
Lsi07G007210	Melon (DHL92) v3.5.1	lsimeB427
Lsi07G007210	Melon (DHL92) v3.5.1	lsimeB455
Lsi07G007210	Watermelon (Charleston Gray)	lsiwcgB397
Lsi07G007210	Watermelon (97103) v1	lsiwmB456
Lsi07G007210	Cucumber (Gy14) v2	cgyblsiB353
Lsi07G007210	Melon (DHL92) v3.6.1	lsimedB447
Lsi07G007210	Melon (DHL92) v3.6.1	lsimedB468
Lsi07G007210	Silver-seed gourd	carlsiB328
Lsi07G007210	Silver-seed gourd	carlsiB536
Lsi07G007210	Cucumber (Chinese Long) v3	cuclsiB410
Lsi07G007210	Watermelon (97103) v2	lsiwmbB394
Lsi07G007210	Wax gourd	lsiwgoB542
Lsi07G007210	Bottle gourd (USVL1VR-Ls)	lsilsiB020
Lsi07G007210	Cucumber (Gy14) v1	cgylsiB492
Lsi07G007210	Cucurbita maxima (Rimu)	cmalsiB292
Lsi07G007210	Cucurbita maxima (Rimu)	cmalsiB325
Lsi07G007210	Cucurbita moschata (Rifu)	cmolsiB280
Lsi07G007210	Cucurbita moschata (Rifu)	cmolsiB314