CmaCh04G006860 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G006860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic
Location	Cma_Chr04 : 3488106 .. 3488822 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTCCATCTCCCTCCCTTCTCCCCAATCTCCCCTTCTCAAATCCACCTTCCTCGGCCGAACTACCCGTCGCTTTCATCTCCACCGCCAATTTCCCCTTCCCCGTCGCGCATCACCAAGCCATCACACTTTCCGGCCCTCCGCCGCCTTCGATTTGGCCCAGCTTCTCGGCGGAAGAGGCCTTTGCAATGGCGAGAAAGGTCTCAAAGAGGAACTGAAGCGAAACGTGGTGGAGGAAACAATCGGCGCCGAAATTCCGGAAACAACCGAGAAATTAGCCGTCGATAAGGTTCCAGAAGATGGATTCGACAAGGAATTGATGGGATTAACCGGCGGATTTCCTGGCGGAGAGAAAGGATTGCGGAAATTCATAACGGAAAATCCTCCTCCTCCGCCTCCGAAACCTTCCGCTTCAAAATCCGTCGAAATCGGTGCGATTCCGAGTTCGCAGAAACCAAAACCACCGGATCTGCCGCTGTTGCTGCCCGGAATGATCGCGATTGTGAAGAATCCGAACAGTCCATATTATATGTACTGCGGAATTGTACAGAGAATCACAGACGGAAAGGCAGGAGTTCTTTTCGAAGGAGGAAATTGGGATCGATTGATTACGTTTCGGCTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAATCCAAGATCGGCTGTTCTTGAACCTCTTCTTCAAAAGGATTCCCAATGA

mRNA sequence

ATGGCGTCCTCCATCTCCCTCCCTTCTCCCCAATCTCCCCTTCTCAAATCCACCTTCCTCGGCCGAACTACCCGTCGCTTTCATCTCCACCGCCAATTTCCCCTTCCCCGTCGCGCATCACCAAGCCATCACACTTTCCGGCCCTCCGCCGCCTTCGATTTGGCCCAGCTTCTCGGCGGAAGAGGCCTTTGCAATGGCGAGAAAGGTCTCAAAGAGGAACTGAAGCGAAACGTGGTGGAGGAAACAATCGGCGCCGAAATTCCGGAAACAACCGAGAAATTAGCCGTCGATAAGGTTCCAGAAGATGGATTCGACAAGGAATTGATGGGATTAACCGGCGGATTTCCTGGCGGAGAGAAAGGATTGCGGAAATTCATAACGGAAAATCCTCCTCCTCCGCCTCCGAAACCTTCCGCTTCAAAATCCGTCGAAATCGGTGCGATTCCGAGTTCGCAGAAACCAAAACCACCGGATCTGCCGCTGTTGCTGCCCGGAATGATCGCGATTGTGAAGAATCCGAACAGTCCATATTATATGTACTGCGGAATTGTACAGAGAATCACAGACGGAAAGGCAGGAGTTCTTTTCGAAGGAGGAAATTGGGATCGATTGATTACGTTTCGGCTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAATCCAAGATCGGCTGTTCTTGAACCTCTTCTTCAAAAGGATTCCCAATGA

Coding sequence (CDS)

ATGGCGTCCTCCATCTCCCTCCCTTCTCCCCAATCTCCCCTTCTCAAATCCACCTTCCTCGGCCGAACTACCCGTCGCTTTCATCTCCACCGCCAATTTCCCCTTCCCCGTCGCGCATCACCAAGCCATCACACTTTCCGGCCCTCCGCCGCCTTCGATTTGGCCCAGCTTCTCGGCGGAAGAGGCCTTTGCAATGGCGAGAAAGGTCTCAAAGAGGAACTGAAGCGAAACGTGGTGGAGGAAACAATCGGCGCCGAAATTCCGGAAACAACCGAGAAATTAGCCGTCGATAAGGTTCCAGAAGATGGATTCGACAAGGAATTGATGGGATTAACCGGCGGATTTCCTGGCGGAGAGAAAGGATTGCGGAAATTCATAACGGAAAATCCTCCTCCTCCGCCTCCGAAACCTTCCGCTTCAAAATCCGTCGAAATCGGTGCGATTCCGAGTTCGCAGAAACCAAAACCACCGGATCTGCCGCTGTTGCTGCCCGGAATGATCGCGATTGTGAAGAATCCGAACAGTCCATATTATATGTACTGCGGAATTGTACAGAGAATCACAGACGGAAAGGCAGGAGTTCTTTTCGAAGGAGGAAATTGGGATCGATTGATTACGTTTCGGCTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAATCCAAGATCGGCTGTTCTTGAACCTCTTCTTCAAAAGGATTCCCAATGA

Protein sequence

MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRASPSHHTFRPSAAFDLAQLLGGRGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEKGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ

Homology

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BLAST of CmaCh04G006860 vs. Swiss-Prot
Match: NDHS_ARATH (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana GN=ndhS PE=1 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.4e-74
Identity = 146/241 (60.58%), Postives = 189/241 (78.42%), Query Frame = 1


Query: 3   SSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRASPSHHTFRPSAAFDLAQLLGGR 62
           SSI++P+ ++P+ +S FLG+T +   ++R  FP P++ S  +   +    F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGEKGLKEELKRNVVEE--TIGAEIPETTEKLAVD-----KVPEDGFDKELMGLTGG 122
           GLCNGEKG+++EL+RN+ +E  T  AE  ET E+ + D     KVPEDGF+KE+MGLTGG
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNET-ERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 123 FPGGEKGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPN 182
           FPGGEKGL+ FI +NPPPPPP P A +  +  A+ + +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 183 SPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 236
           SPY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEPL++
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 242

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BLAST of CmaCh04G006860 vs. TrEMBL
Match: A0A0A0KV29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052580 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 2.5e-99
Identity = 191/238 (80.25%), Postives = 210/238 (88.24%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRASPSHHTFRPSAAFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL +  RR  LHR FPLP R AS + H FRPSAAFDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+GLKEELKRNV +  +   G+EIP T++KL VD VPEDGF+KELMGLTGGFP
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122

Query: 121 GGEKGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFI+ENPPP   KPSASKS EIG+I ++QKPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 123 GGEKGLKKFISENPPPR--KPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 235
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SA   PLL+
Sbjct: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 238

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BLAST of CmaCh04G006860 vs. TrEMBL
Match: A0A061G593_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_016470 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 1.0e-76
Identity = 156/239 (65.27%), Postives = 184/239 (76.99%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRASPSHHTFRPSAAFDLAQLLG 60
           MASSI+LPS Q  LL+S FLG+       H+  FP+ ++      TF   A FDL ++LG
Sbjct: 1   MASSITLPSLQGSLLRSRFLGQNPISHRPHKSAFPVVKQPK----TF--CAKFDLFEILG 60

Query: 61  GRGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGE 120
           GRGLCNGEKGL+ ELKRNV+E +  A   E         VPED F+KELMGLTGGFPGGE
Sbjct: 61  GRGLCNGEKGLEVELKRNVLEASSPATKDEQRSGSTAISVPEDAFEKELMGLTGGFPGGE 120

Query: 121 KGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYM 180
           KGL+KF+ ENPPP   K S S SV I  + +++KPKPP+LPLL+PGMIAIVKNPN+P+YM
Sbjct: 121 KGLKKFVEENPPPA--KQSVSDSVSIARLAATKKPKPPELPLLMPGMIAIVKNPNNPFYM 180

Query: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 239
           YCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNP+SAVLE +L+KD +
Sbjct: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPKSAVLEAMLEKDQK 231

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BLAST of CmaCh04G006860 vs. TrEMBL
Match: M5WAD8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010487mg PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.1e-75
Identity = 159/252 (63.10%), Postives = 187/252 (74.21%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRASPSHHTFRPSAAFDLAQLLG 60
           MAS+I+LPS Q PLLKS FLGR       H+  F + ++  PS H+ RP A F+L+++LG
Sbjct: 1   MASNITLPSFQGPLLKSNFLGRNDLSNRAHKSSFTIHKQ--PSIHSLRPCAKFNLSEILG 60

Query: 61  GRGLCNGEKGLKEELKRNV-----VEETIGAEIPETTEK--------LAVDKVPEDGFDK 120
           GRGLCNGE+GL +EL RNV     VEE + A +   T++         A+  V ED F+K
Sbjct: 61  GRGLCNGEEGLLQELTRNVEEQKDVEEQVSAAVAAETDEEKSDSSSASALKSVQEDAFEK 120

Query: 121 ELMGLTGGFPGGEKGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGM 180
           ELMGLTGGFPGGEKGL+KFI +NPPP   KP  + S    A+ SS+KPK P+LPLLLPGM
Sbjct: 121 ELMGLTGGFPGGEKGLQKFIEKNPPPK--KPLVADSGSTAALVSSKKPKAPELPLLLPGM 180

Query: 181 IAIVKNPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRS 239
           IAIV NPNSPYY YCGIVQRITDGKAGVLFEGGNWDRLITFRL EL RR+KGPP KNP+S
Sbjct: 181 IAIVNNPNSPYYKYCGIVQRITDGKAGVLFEGGNWDRLITFRLGELLRRDKGPPGKNPKS 240

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BLAST of CmaCh04G006860 vs. TrEMBL
Match: V4LWB0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10027518mg PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 4.8e-74
Identity = 147/240 (61.25%), Postives = 185/240 (77.08%), Query Frame = 1


Query: 3   SSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRASPSHHTFRPSAAFDLAQLLGGR 62
           +S ++P+  SP+ K+ FLG+T      +R  FP P++ S  H   +  A F+L +++GGR
Sbjct: 4   TSFTIPTIPSPIRKTNFLGQTHLFAAANRSIFPPPKQLSNPHQV-KAMAKFNLWEVMGGR 63

Query: 63  GLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVD-----KVPEDGFDKELMGLTGGFP 122
           GLCNGEKG+++ELKRN+ EET  AE     E    D     KVPE+GFDKE+MGLTGGFP
Sbjct: 64  GLCNGEKGIEKELKRNIEEETSKAESVTEKESDGDDNTLSFKVPENGFDKEMMGLTGGFP 123

Query: 123 GGEKGLRKFITENPPPPPPK-PSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNS 182
           GGEKGL+ FI +NPPPPPP+ P A +  ++ A+ + +KP+ P+LPLL+PGMIAIVKN N+
Sbjct: 124 GGEKGLQTFIEQNPPPPPPQQPPAKRGTDVSAVAADKKPRAPELPLLMPGMIAIVKNANN 183

Query: 183 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQK 236
           PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S VLEPLL++
Sbjct: 184 PYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCVLEPLLEQ 242

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BLAST of CmaCh04G006860 vs. TrEMBL
Match: A0A0F7GZW0_9ROSI (Chlororespiratory reduction31 OS=California macrophylla GN=NDHS PE=2 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 4.1e-73
Identity = 151/243 (62.14%), Postives = 182/243 (74.90%), Query Frame = 1


Query: 2   ASSISLPSPQSPLLKSTFLGRTTRRFHLHRQF-PLPRRASPSHHTFRPSAAFDLAQLLGG 61
           +SSI+LPS Q P LKS FLGR     + H+ F  + ++ S S+   + SA FDL Q+LGG
Sbjct: 3   SSSITLPSLQGPQLKSHFLGRKILPGNSHKLFFSVSKQRSTSYP--KASAKFDLFQILGG 62

Query: 62  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVD-----KVPEDGFDKELMGLTGGF 121
           RGLCNGEKG++EELK+++ E          TE+ +       K PEDGFDKELMGLTGGF
Sbjct: 63  RGLCNGEKGIEEELKKSIEETAPSLSASAETEQSSGSEESSVKAPEDGFDKELMGLTGGF 122

Query: 122 PGGEKGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNS 181
           PGGE GLRKFI +NPPPP     A    +  A+ +S+K K P+LPLL+PGMIAIVKNPN+
Sbjct: 123 PGGETGLRKFIEKNPPPPKKATPAKGEDKTVALATSKKMKAPELPLLMPGMIAIVKNPNN 182

Query: 182 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQK 239
           P+YMYCGIVQRITDG+AGVLFEGGNWD+LITFRLEELERREKGPP KNPRS VLE L++K
Sbjct: 183 PFYMYCGIVQRITDGRAGVLFEGGNWDKLITFRLEELERREKGPPAKNPRSVVLEALVEK 242

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BLAST of CmaCh04G006860 vs. TAIR10
Match: AT4G23890.1 (AT4G23890.1 unknown protein)

HSP 1 Score: 280.8 bits (717), Expect = 7.8e-76
Identity = 146/241 (60.58%), Postives = 189/241 (78.42%), Query Frame = 1


Query: 3   SSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRASPSHHTFRPSAAFDLAQLLGGR 62
           SSI++P+ ++P+ +S FLG+T +   ++R  FP P++ S  +   +    F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGEKGLKEELKRNVVEE--TIGAEIPETTEKLAVD-----KVPEDGFDKELMGLTGG 122
           GLCNGEKG+++EL+RN+ +E  T  AE  ET E+ + D     KVPEDGF+KE+MGLTGG
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNET-ERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 123 FPGGEKGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPN 182
           FPGGEKGL+ FI +NPPPPPP P A +  +  A+ + +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 183 SPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 236
           SPY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEPL++
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 242

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BLAST of CmaCh04G006860 vs. NCBI nr
Match: gi|449462539|ref|XP_004148998.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 387.1 bits (993), Expect = 2.2e-104
Identity = 199/242 (82.23%), Postives = 217/242 (89.67%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRASPSHHTFRPSAAFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL +  RR  LHR FPLP R AS + H FRPSAAFDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+GLKEELKRNV +  +   G+EIP T++KL VD VPEDGF+KELMGLTGGFP
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122

Query: 121 GGEKGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFI+ENPPP   KPSASKS EIG+I ++QKPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 123 GGEKGLKKFISENPPPR--KPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 239
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEPLLQKD
Sbjct: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD 242

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BLAST of CmaCh04G006860 vs. NCBI nr
Match: gi|659102099|ref|XP_008451952.1| (PREDICTED: uncharacterized protein LOC103493099 [Cucumis melo])

HSP 1 Score: 386.7 bits (992), Expect = 2.9e-104
Identity = 198/242 (81.82%), Postives = 216/242 (89.26%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRASPSHHTFRPSAAFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL +  RR  LHR FPLP R AS +HH FRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+G++EELKRNV +  +   G EIPET+ KL VD VPEDGF+KELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 121 GGEKGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFI+ENPPP   KPSASKS EIG+I +++KPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 121 GGEKGLKKFISENPPPR--KPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 239
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEP LQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKD 240

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BLAST of CmaCh04G006860 vs. NCBI nr
Match: gi|700198250|gb|KGN53408.1| (hypothetical protein Csa_4G052580 [Cucumis sativus])

HSP 1 Score: 369.8 bits (948), Expect = 3.6e-99
Identity = 191/238 (80.25%), Postives = 210/238 (88.24%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRASPSHHTFRPSAAFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL +  RR  LHR FPLP R AS + H FRPSAAFDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+GLKEELKRNV +  +   G+EIP T++KL VD VPEDGF+KELMGLTGGFP
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122

Query: 121 GGEKGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFI+ENPPP   KPSASKS EIG+I ++QKPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 123 GGEKGLKKFISENPPPR--KPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 235
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SA   PLL+
Sbjct: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 238

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BLAST of CmaCh04G006860 vs. NCBI nr
Match: gi|694354985|ref|XP_009358605.1| (PREDICTED: uncharacterized protein LOC103949228 [Pyrus x bretschneideri])

HSP 1 Score: 296.6 bits (758), Expect = 3.9e-77
Identity = 163/252 (64.68%), Postives = 187/252 (74.21%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRASPSHHTFRPSAAFDLAQLLG 60
           MASSI+LPS Q PLLKS FLGR       H+  F + ++  PS H+ RPSA F+L+++LG
Sbjct: 1   MASSITLPSLQGPLLKSNFLGRNDLSNRAHKSSFAVHKQ--PSTHSLRPSAKFNLSEILG 60

Query: 61  GRGLCNGEKGLKEELKRNVVE------ETIGA--------EIPETTEKLAVDKVPEDGFD 120
           GRGLCNGE GL +EL RNV E      E + A        E P+ +   A++ V EDGFD
Sbjct: 61  GRGLCNGEAGLLQELTRNVEEQKNVEEEQVSAAAAAKTEEEKPDGSATAAIESVEEDGFD 120

Query: 121 KELMGLTGGFPGGEKGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPG 180
           KELMGLTGGFPGGEKGLRKFI +NPPP   K S + S    A+ S++KPK P+LPLLLPG
Sbjct: 121 KELMGLTGGFPGGEKGLRKFIEKNPPPK--KSSIAISGSTAALVSTKKPKAPELPLLLPG 180

Query: 181 MIAIVKNPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPR 238
           MIAIV NPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRL EL RR+KGPP KNP+
Sbjct: 181 MIAIVNNPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLGELMRRDKGPPGKNPK 240

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BLAST of CmaCh04G006860 vs. NCBI nr
Match: gi|590679252|ref|XP_007040528.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 294.7 bits (753), Expect = 1.5e-76
Identity = 156/239 (65.27%), Postives = 184/239 (76.99%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRASPSHHTFRPSAAFDLAQLLG 60
           MASSI+LPS Q  LL+S FLG+       H+  FP+ ++      TF   A FDL ++LG
Sbjct: 1   MASSITLPSLQGSLLRSRFLGQNPISHRPHKSAFPVVKQPK----TF--CAKFDLFEILG 60

Query: 61  GRGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGE 120
           GRGLCNGEKGL+ ELKRNV+E +  A   E         VPED F+KELMGLTGGFPGGE
Sbjct: 61  GRGLCNGEKGLEVELKRNVLEASSPATKDEQRSGSTAISVPEDAFEKELMGLTGGFPGGE 120

Query: 121 KGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYM 180
           KGL+KF+ ENPPP   K S S SV I  + +++KPKPP+LPLL+PGMIAIVKNPN+P+YM
Sbjct: 121 KGLKKFVEENPPPA--KQSVSDSVSIARLAATKKPKPPELPLLMPGMIAIVKNPNNPFYM 180

Query: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 239
           YCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNP+SAVLE +L+KD +
Sbjct: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPKSAVLEAMLEKDQK 231

The following BLAST results are available for this feature:

BLAST of CmaCh04G006860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDHS_ARATH	1.4e-74	60.58	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of CmaCh04G006860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV29_CUCSA	2.5e-99	80.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052580 PE=4 SV=1	[more]
A0A061G593_THECC	1.0e-76	65.27	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_016470 PE=4 SV=1	[more]
M5WAD8_PRUPE	1.1e-75	63.10	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010487mg PE=4 SV=1	[more]
V4LWB0_EUTSA	4.8e-74	61.25	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10027518mg PE=4 SV=1	[more]
A0A0F7GZW0_9ROSI	4.1e-73	62.14	Chlororespiratory reduction31 OS=California macrophylla GN=NDHS PE=2 SV=1	[more]

BLAST of CmaCh04G006860 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23890.1	7.8e-76	60.58	unknown protein	[more]

BLAST of CmaCh04G006860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462539\|ref\|XP_004148998.1\|	2.2e-104	82.23	PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X1 [C...	[more]
gi\|659102099\|ref\|XP_008451952.1\|	2.9e-104	81.82	PREDICTED: uncharacterized protein LOC103493099 [Cucumis melo]	[more]
gi\|700198250\|gb\|KGN53408.1\|	3.6e-99	80.25	hypothetical protein Csa_4G052580 [Cucumis sativus]	[more]
gi\|694354985\|ref\|XP_009358605.1\|	3.9e-77	64.68	PREDICTED: uncharacterized protein LOC103949228 [Pyrus x bretschneideri]	[more]
gi\|590679252\|ref\|XP_007040528.1\|	1.5e-76	65.27	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021659	NdhS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0065007	biological regulation
biological_process	GO:0006812	cation transport
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0008150	biological_process
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G006860.1	CmaCh04G006860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021659	Protein of unknown function DUF3252	PFAM	PF11623	DUF3252	coord: 162..213 score: 1.1
None	No IPR available	PANTHER	PTHR35494	FAMILY NOT NAMED	coord: 1..238 score: 2.2E
None	No IPR available	PANTHER	PTHR35494:SF1	SUBFAMILY NOT NAMED	coord: 1..238 score: 2.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G006860	Cucsa.114990	Cucumber (Gy14) v1	cgycmaB0279
CmaCh04G006860	Cla012805	Watermelon (97103) v1	cmawmB694
CmaCh04G006860	Csa4G052580	Cucumber (Chinese Long) v2	cmacuB713
CmaCh04G006860	MELO3C016296	Melon (DHL92) v3.5.1	cmameB703
CmaCh04G006860	ClCG07G011600	Watermelon (Charleston Gray)	cmawcgB671
CmaCh04G006860	CSPI04G06400	Wild cucumber (PI 183967)	cmacpiB721
CmaCh04G006860	CmoCh04G007310	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G006860	Lsi07G007210	Bottle gourd (USVL1VR-Ls)	cmalsiB699
CmaCh04G006860	Cp4.1LG01g00550	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G006860	MELO3C016296.2	Melon (DHL92) v3.6.1	cmamedB792
CmaCh04G006860	CsaV3_4G006610	Cucumber (Chinese Long) v3	cmacucB0847
CmaCh04G006860	Cla97C07G138340	Watermelon (97103) v2	cmawmbB776
CmaCh04G006860	Bhi01G002301	Wax gourd	cmawgoB0853
CmaCh04G006860	CsGy4G006320	Cucumber (Gy14) v2	cgybcmaB547
CmaCh04G006860	Carg13072	Silver-seed gourd	carcmaB0055

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G006860	Cucumber (Chinese Long) v3	cmacucB0872
CmaCh04G006860	Watermelon (97103) v2	cmawmbB706
CmaCh04G006860	Wax gourd	cmawgoB0829
CmaCh04G006860	Cucurbita maxima (Rimu)	cmacmaB328
CmaCh04G006860	Cucurbita maxima (Rimu)	cmacmaB350
CmaCh04G006860	Cucumber (Gy14) v1	cgycmaB0838
CmaCh04G006860	Cucurbita moschata (Rifu)	cmacmoB697
CmaCh04G006860	Cucurbita moschata (Rifu)	cmacmoB700
CmaCh04G006860	Wild cucumber (PI 183967)	cmacpiB741
CmaCh04G006860	Cucumber (Chinese Long) v2	cmacuB734
CmaCh04G006860	Melon (DHL92) v3.5.1	cmameB638
CmaCh04G006860	Melon (DHL92) v3.5.1	cmameB694
CmaCh04G006860	Watermelon (Charleston Gray)	cmawcgB635
CmaCh04G006860	Watermelon (97103) v1	cmawmB712
CmaCh04G006860	Cucurbita pepo (Zucchini)	cmacpeB714
CmaCh04G006860	Bottle gourd (USVL1VR-Ls)	cmalsiB624
CmaCh04G006860	Cucumber (Gy14) v2	cgybcmaB661
CmaCh04G006860	Melon (DHL92) v3.6.1	cmamedB724
CmaCh04G006860	Melon (DHL92) v3.6.1	cmamedB782
CmaCh04G006860	Silver-seed gourd	carcmaB0509
CmaCh04G006860	Silver-seed gourd	carcmaB0826