CmoCh04G007310 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G007310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic
Location	Cmo_Chr04 : 3639095 .. 3639811 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTCCATCTCCCTCCCTTCTCCCCAATCTCCCCTTCTCAAATCCACCTTCCTCGGCCGAACTACCCGCCGCTTTCATCTCCACCGCCAATTTCCCCTTCCCCGTCGCGCATTACCGAGCCATCACACTTCCCGGCCTTCCGCCGCCTTCGATTTGGCCCAGCTTCTCGGCGGAAGAGGCCTTTGCAATGGCGAGAAAGGTCTCAATGAGGAACTGAAGCGAAACGTGGTGGAGGAAACAATCGGCGCCGAAATTCCGGAAACAACCGAGAAATTAGCCGTCGATAAGGTTCCGGAAGATGGATTCGACAAGGAATTGATGGGATTAACCGGCGGATTTCCTGGCGGAGAGAAAGGACTACGGAAATTCATATCGGAAAATCCTCCTCCTCCGCCTCCGAAACCTTCCGCTTCAAAATCCATCGAAATCGGTGCGATTCCGAGTTCGCAAAAACCAAAACCACCGGATCTGCCGCTGTTGCTACCCGGAATGATCGCGATTGTGAAGAATCCGAACAGTCCATATTATATGTACTGCGGAATTGTACAGAGAATCACAGACGGAAAGGCAGGAGTTCTTTTCGAAGGAGGAAATTGGGATCGATTGATTACGTTTCGGCTGGAGGAGCTTGAACGAAGGGAAAAAGGACCTCCGATGAAGAATCCAAGATCGGCTGTTCTTGAACCTCTTCTTCAAAAGGATTCCCAATAA

mRNA sequence

ATGGCGTCCTCCATCTCCCTCCCTTCTCCCCAATCTCCCCTTCTCAAATCCACCTTCCTCGGCCGAACTACCCGCCGCTTTCATCTCCACCGCCAATTTCCCCTTCCCCGTCGCGCATTACCGAGCCATCACACTTCCCGGCCTTCCGCCGCCTTCGATTTGGCCCAGCTTCTCGGCGGAAGAGGCCTTTGCAATGGCGAGAAAGGTCTCAATGAGGAACTGAAGCGAAACGTGGTGGAGGAAACAATCGGCGCCGAAATTCCGGAAACAACCGAGAAATTAGCCGTCGATAAGGTTCCGGAAGATGGATTCGACAAGGAATTGATGGGATTAACCGGCGGATTTCCTGGCGGAGAGAAAGGACTACGGAAATTCATATCGGAAAATCCTCCTCCTCCGCCTCCGAAACCTTCCGCTTCAAAATCCATCGAAATCGGTGCGATTCCGAGTTCGCAAAAACCAAAACCACCGGATCTGCCGCTGTTGCTACCCGGAATGATCGCGATTGTGAAGAATCCGAACAGTCCATATTATATGTACTGCGGAATTGTACAGAGAATCACAGACGGAAAGGCAGGAGTTCTTTTCGAAGGAGGAAATTGGGATCGATTGATTACGTTTCGGCTGGAGGAGCTTGAACGAAGGGAAAAAGGACCTCCGATGAAGAATCCAAGATCGGCTGTTCTTGAACCTCTTCTTCAAAAGGATTCCCAATAA

Coding sequence (CDS)

ATGGCGTCCTCCATCTCCCTCCCTTCTCCCCAATCTCCCCTTCTCAAATCCACCTTCCTCGGCCGAACTACCCGCCGCTTTCATCTCCACCGCCAATTTCCCCTTCCCCGTCGCGCATTACCGAGCCATCACACTTCCCGGCCTTCCGCCGCCTTCGATTTGGCCCAGCTTCTCGGCGGAAGAGGCCTTTGCAATGGCGAGAAAGGTCTCAATGAGGAACTGAAGCGAAACGTGGTGGAGGAAACAATCGGCGCCGAAATTCCGGAAACAACCGAGAAATTAGCCGTCGATAAGGTTCCGGAAGATGGATTCGACAAGGAATTGATGGGATTAACCGGCGGATTTCCTGGCGGAGAGAAAGGACTACGGAAATTCATATCGGAAAATCCTCCTCCTCCGCCTCCGAAACCTTCCGCTTCAAAATCCATCGAAATCGGTGCGATTCCGAGTTCGCAAAAACCAAAACCACCGGATCTGCCGCTGTTGCTACCCGGAATGATCGCGATTGTGAAGAATCCGAACAGTCCATATTATATGTACTGCGGAATTGTACAGAGAATCACAGACGGAAAGGCAGGAGTTCTTTTCGAAGGAGGAAATTGGGATCGATTGATTACGTTTCGGCTGGAGGAGCTTGAACGAAGGGAAAAAGGACCTCCGATGAAGAATCCAAGATCGGCTGTTCTTGAACCTCTTCTTCAAAAGGATTCCCAATAA

Homology

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BLAST of CmoCh04G007310 vs. Swiss-Prot
Match: NDHS_ARATH (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana GN=ndhS PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 9.0e-74
Identity = 145/241 (60.17%), Postives = 187/241 (77.59%), Query Frame = 1


Query: 3   SSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRALPSHHTSRPSAAFDLAQLLGGR 62
           SSI++P+ ++P+ +S FLG+T +   ++R  FP P++    +   +    F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGEKGLNEELKRNVVEE--TIGAEIPETTEKLAVD-----KVPEDGFDKELMGLTGG 122
           GLCNGEKG+ +EL+RN+ +E  T  AE  ET E+ + D     KVPEDGF+KE+MGLTGG
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNET-ERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 123 FPGGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPN 182
           FPGGEKGL+ FI +NPPPPPP P A +  +  A+ + +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 183 SPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 236
           SPY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEPL++
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 242

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BLAST of CmoCh04G007310 vs. TrEMBL
Match: A0A0A0KV29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052580 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 2.4e-97
Identity = 189/238 (79.41%), Postives = 207/238 (86.97%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRALPSHHTSRPSAAFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL +  RR  LHR FPLP R A  + H  RPSAAFDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGEKGLNEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+GL EELKRNV +  +   G+EIP T++KL VD VPEDGF+KELMGLTGGFP
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122

Query: 121 GGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFISENPPP   KPSASKS EIG+I ++QKPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 123 GGEKGLKKFISENPPPR--KPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 235
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SA   PLL+
Sbjct: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 238

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BLAST of CmoCh04G007310 vs. TrEMBL
Match: A0A061G593_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_016470 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 6.7e-76
Identity = 153/239 (64.02%), Postives = 181/239 (75.73%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRALPSHHTSRPSAAFDLAQLLG 60
           MASSI+LPS Q  LL+S FLG+       H+  FP+ ++           A FDL ++LG
Sbjct: 1   MASSITLPSLQGSLLRSRFLGQNPISHRPHKSAFPVVKQPKTF------CAKFDLFEILG 60

Query: 61  GRGLCNGEKGLNEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGE 120
           GRGLCNGEKGL  ELKRNV+E +  A   E         VPED F+KELMGLTGGFPGGE
Sbjct: 61  GRGLCNGEKGLEVELKRNVLEASSPATKDEQRSGSTAISVPEDAFEKELMGLTGGFPGGE 120

Query: 121 KGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYM 180
           KGL+KF+ ENPPP   K S S S+ I  + +++KPKPP+LPLL+PGMIAIVKNPN+P+YM
Sbjct: 121 KGLKKFVEENPPPA--KQSVSDSVSIARLAATKKPKPPELPLLMPGMIAIVKNPNNPFYM 180

Query: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 239
           YCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNP+SAVLE +L+KD +
Sbjct: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPKSAVLEAMLEKDQK 231

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BLAST of CmoCh04G007310 vs. TrEMBL
Match: M5WAD8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010487mg PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 3.3e-75
Identity = 159/252 (63.10%), Postives = 187/252 (74.21%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRALPSHHTSRPSAAFDLAQLLG 60
           MAS+I+LPS Q PLLKS FLGR       H+  F + ++  PS H+ RP A F+L+++LG
Sbjct: 1   MASNITLPSFQGPLLKSNFLGRNDLSNRAHKSSFTIHKQ--PSIHSLRPCAKFNLSEILG 60

Query: 61  GRGLCNGEKGLNEELKRNV-----VEETIGAEIPETTEK--------LAVDKVPEDGFDK 120
           GRGLCNGE+GL +EL RNV     VEE + A +   T++         A+  V ED F+K
Sbjct: 61  GRGLCNGEEGLLQELTRNVEEQKDVEEQVSAAVAAETDEEKSDSSSASALKSVQEDAFEK 120

Query: 121 ELMGLTGGFPGGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGM 180
           ELMGLTGGFPGGEKGL+KFI +NPPP   KP  + S    A+ SS+KPK P+LPLLLPGM
Sbjct: 121 ELMGLTGGFPGGEKGLQKFIEKNPPPK--KPLVADSGSTAALVSSKKPKAPELPLLLPGM 180

Query: 181 IAIVKNPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRS 239
           IAIV NPNSPYY YCGIVQRITDGKAGVLFEGGNWDRLITFRL EL RR+KGPP KNP+S
Sbjct: 181 IAIVNNPNSPYYKYCGIVQRITDGKAGVLFEGGNWDRLITFRLGELLRRDKGPPGKNPKS 240

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BLAST of CmoCh04G007310 vs. TrEMBL
Match: V4LWB0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10027518mg PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 3.7e-74
Identity = 145/239 (60.67%), Postives = 182/239 (76.15%), Query Frame = 1


Query: 3   SSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHHTSRPSAAFDLAQLLGGRG 62
           +S ++P+  SP+ K+ FLG+T      +R    P + L + H  +  A F+L +++GGRG
Sbjct: 4   TSFTIPTIPSPIRKTNFLGQTHLFAAANRSIFPPPKQLSNPHQVKAMAKFNLWEVMGGRG 63

Query: 63  LCNGEKGLNEELKRNVVEETIGAEIPETTEKLAVD-----KVPEDGFDKELMGLTGGFPG 122
           LCNGEKG+ +ELKRN+ EET  AE     E    D     KVPE+GFDKE+MGLTGGFPG
Sbjct: 64  LCNGEKGIEKELKRNIEEETSKAESVTEKESDGDDNTLSFKVPENGFDKEMMGLTGGFPG 123

Query: 123 GEKGLRKFISENPPPPPPK-PSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 182
           GEKGL+ FI +NPPPPPP+ P A +  ++ A+ + +KP+ P+LPLL+PGMIAIVKN N+P
Sbjct: 124 GEKGLQTFIEQNPPPPPPQQPPAKRGTDVSAVAADKKPRAPELPLLMPGMIAIVKNANNP 183

Query: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQK 236
           Y+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S VLEPLL++
Sbjct: 184 YHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCVLEPLLEQ 242

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BLAST of CmoCh04G007310 vs. TrEMBL
Match: A0A0F7GY88_9ROSI (Chlororespiratory reduction31 OS=Pelargonium myrrhifolium GN=NDHS PE=2 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 9.1e-73
Identity = 150/246 (60.98%), Postives = 184/246 (74.80%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHHTSRPSAAFDLAQLLGG 60
           MASSI+LP+ Q P LKS F GR        ++FP  R  L    + +  A F+L ++LGG
Sbjct: 1   MASSITLPTLQGPQLKSQFFGRKILPT-TSQKFPKQRSTL----SLKTCAKFNLFEILGG 60

Query: 61  RGLCNGEKGLNEELKRNVVEETIG--AEIPETTE------KLAVDKVPEDGFDKELMGLT 120
           RGLCNGE+G+ EELK+++  +T    A   ET +      K ++  VPE+GFDKELMGLT
Sbjct: 61  RGLCNGEEGIQEELKKSIENQTASPPAAATETQQSESSDSKNSIGNVPEEGFDKELMGLT 120

Query: 121 GGFPGGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKN 180
           GGFPGGE GLRKFI ENPPPP    +A+K++ +    +S+K K P+LPLL+PGMIAIVKN
Sbjct: 121 GGFPGGETGLRKFIEENPPPPKNSAAANKTVSLA---TSKKAKAPELPLLMPGMIAIVKN 180

Query: 181 PNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPL 239
           PN+P+YMYCGIVQRITDGKAGVLFEGGNWDRL+TFRLEELERREKGPP KNP+S VLE L
Sbjct: 181 PNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLVTFRLEELERREKGPPAKNPKSVVLEAL 238

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BLAST of CmoCh04G007310 vs. TAIR10
Match: AT4G23890.1 (AT4G23890.1 unknown protein)

HSP 1 Score: 278.1 bits (710), Expect = 5.1e-75
Identity = 145/241 (60.17%), Postives = 187/241 (77.59%), Query Frame = 1


Query: 3   SSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRALPSHHTSRPSAAFDLAQLLGGR 62
           SSI++P+ ++P+ +S FLG+T +   ++R  FP P++    +   +    F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGEKGLNEELKRNVVEE--TIGAEIPETTEKLAVD-----KVPEDGFDKELMGLTGG 122
           GLCNGEKG+ +EL+RN+ +E  T  AE  ET E+ + D     KVPEDGF+KE+MGLTGG
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNET-ERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 123 FPGGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPN 182
           FPGGEKGL+ FI +NPPPPPP P A +  +  A+ + +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 183 SPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 236
           SPY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEPL++
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 242

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BLAST of CmoCh04G007310 vs. NCBI nr
Match: gi|659102099|ref|XP_008451952.1| (PREDICTED: uncharacterized protein LOC103493099 [Cucumis melo])

HSP 1 Score: 381.7 bits (979), Expect = 9.2e-103
Identity = 197/242 (81.40%), Postives = 213/242 (88.02%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRALPSHHTSRPSAAFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL +  RR  LHR FPLP R A  +HH  RPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGEKGLNEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+G+ EELKRNV +  +   G EIPET+ KL VD VPEDGF+KELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 121 GGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFISENPPP   KPSASKS EIG+I +++KPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 121 GGEKGLKKFISENPPPR--KPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 239
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEP LQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKD 240

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BLAST of CmoCh04G007310 vs. NCBI nr
Match: gi|449462539|ref|XP_004148998.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 380.6 bits (976), Expect = 2.1e-102
Identity = 197/242 (81.40%), Postives = 214/242 (88.43%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRALPSHHTSRPSAAFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL +  RR  LHR FPLP R A  + H  RPSAAFDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGEKGLNEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+GL EELKRNV +  +   G+EIP T++KL VD VPEDGF+KELMGLTGGFP
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122

Query: 121 GGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFISENPPP   KPSASKS EIG+I ++QKPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 123 GGEKGLKKFISENPPPR--KPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 239
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEPLLQKD
Sbjct: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD 242

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BLAST of CmoCh04G007310 vs. NCBI nr
Match: gi|700198250|gb|KGN53408.1| (hypothetical protein Csa_4G052580 [Cucumis sativus])

HSP 1 Score: 363.2 bits (931), Expect = 3.4e-97
Identity = 189/238 (79.41%), Postives = 207/238 (86.97%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRALPSHHTSRPSAAFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL +  RR  LHR FPLP R A  + H  RPSAAFDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGEKGLNEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+GL EELKRNV +  +   G+EIP T++KL VD VPEDGF+KELMGLTGGFP
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122

Query: 121 GGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFISENPPP   KPSASKS EIG+I ++QKPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 123 GGEKGLKKFISENPPPR--KPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 235
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SA   PLL+
Sbjct: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 238

[Close]

BLAST of CmoCh04G007310 vs. NCBI nr
Match: gi|694354985|ref|XP_009358605.1| (PREDICTED: uncharacterized protein LOC103949228 [Pyrus x bretschneideri])

HSP 1 Score: 295.4 bits (755), Expect = 8.7e-77
Identity = 163/252 (64.68%), Postives = 187/252 (74.21%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRALPSHHTSRPSAAFDLAQLLG 60
           MASSI+LPS Q PLLKS FLGR       H+  F + ++  PS H+ RPSA F+L+++LG
Sbjct: 1   MASSITLPSLQGPLLKSNFLGRNDLSNRAHKSSFAVHKQ--PSTHSLRPSAKFNLSEILG 60

Query: 61  GRGLCNGEKGLNEELKRNVVE------ETIGA--------EIPETTEKLAVDKVPEDGFD 120
           GRGLCNGE GL +EL RNV E      E + A        E P+ +   A++ V EDGFD
Sbjct: 61  GRGLCNGEAGLLQELTRNVEEQKNVEEEQVSAAAAAKTEEEKPDGSATAAIESVEEDGFD 120

Query: 121 KELMGLTGGFPGGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPG 180
           KELMGLTGGFPGGEKGLRKFI +NPPP   K S + S    A+ S++KPK P+LPLLLPG
Sbjct: 121 KELMGLTGGFPGGEKGLRKFIEKNPPPK--KSSIAISGSTAALVSTKKPKAPELPLLLPG 180

Query: 181 MIAIVKNPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPR 238
           MIAIV NPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRL EL RR+KGPP KNP+
Sbjct: 181 MIAIVNNPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLGELMRRDKGPPGKNPK 240

[Close]

BLAST of CmoCh04G007310 vs. NCBI nr
Match: gi|590679252|ref|XP_007040528.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 292.0 bits (746), Expect = 9.6e-76
Identity = 153/239 (64.02%), Postives = 181/239 (75.73%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRALPSHHTSRPSAAFDLAQLLG 60
           MASSI+LPS Q  LL+S FLG+       H+  FP+ ++           A FDL ++LG
Sbjct: 1   MASSITLPSLQGSLLRSRFLGQNPISHRPHKSAFPVVKQPKTF------CAKFDLFEILG 60

Query: 61  GRGLCNGEKGLNEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGE 120
           GRGLCNGEKGL  ELKRNV+E +  A   E         VPED F+KELMGLTGGFPGGE
Sbjct: 61  GRGLCNGEKGLEVELKRNVLEASSPATKDEQRSGSTAISVPEDAFEKELMGLTGGFPGGE 120

Query: 121 KGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYM 180
           KGL+KF+ ENPPP   K S S S+ I  + +++KPKPP+LPLL+PGMIAIVKNPN+P+YM
Sbjct: 121 KGLKKFVEENPPPA--KQSVSDSVSIARLAATKKPKPPELPLLMPGMIAIVKNPNNPFYM 180

Query: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 239
           YCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNP+SAVLE +L+KD +
Sbjct: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPKSAVLEAMLEKDQK 231

The following BLAST results are available for this feature:

BLAST of CmoCh04G007310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDHS_ARATH	9.0e-74	60.17	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of CmoCh04G007310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV29_CUCSA	2.4e-97	79.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052580 PE=4 SV=1	[more]
A0A061G593_THECC	6.7e-76	64.02	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_016470 PE=4 SV=1	[more]
M5WAD8_PRUPE	3.3e-75	63.10	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010487mg PE=4 SV=1	[more]
V4LWB0_EUTSA	3.7e-74	60.67	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10027518mg PE=4 SV=1	[more]
A0A0F7GY88_9ROSI	9.1e-73	60.98	Chlororespiratory reduction31 OS=Pelargonium myrrhifolium GN=NDHS PE=2 SV=1	[more]

BLAST of CmoCh04G007310 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23890.1	5.1e-75	60.17	unknown protein	[more]

BLAST of CmoCh04G007310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102099\|ref\|XP_008451952.1\|	9.2e-103	81.40	PREDICTED: uncharacterized protein LOC103493099 [Cucumis melo]	[more]
gi\|449462539\|ref\|XP_004148998.1\|	2.1e-102	81.40	PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X1 [C...	[more]
gi\|700198250\|gb\|KGN53408.1\|	3.4e-97	79.41	hypothetical protein Csa_4G052580 [Cucumis sativus]	[more]
gi\|694354985\|ref\|XP_009358605.1\|	8.7e-77	64.68	PREDICTED: uncharacterized protein LOC103949228 [Pyrus x bretschneideri]	[more]
gi\|590679252\|ref\|XP_007040528.1\|	9.6e-76	64.02	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021659	NdhS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0065007	biological regulation
biological_process	GO:0006812	cation transport
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0008150	biological_process
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0044763	single-organism cellular process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G007310.1	CmoCh04G007310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021659	Protein of unknown function DUF3252	PFAM	PF11623	DUF3252	coord: 162..213 score: 1.1
None	No IPR available	PANTHER	PTHR35494	FAMILY NOT NAMED	coord: 1..238 score: 7.4E
None	No IPR available	PANTHER	PTHR35494:SF1	SUBFAMILY NOT NAMED	coord: 1..238 score: 7.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G007310	Cucsa.114990	Cucumber (Gy14) v1	cgycmoB0275
CmoCh04G007310	CmaCh04G006860	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G007310	Cla012805	Watermelon (97103) v1	cmowmB688
CmoCh04G007310	Csa4G052580	Cucumber (Chinese Long) v2	cmocuB705
CmoCh04G007310	MELO3C016296	Melon (DHL92) v3.5.1	cmomeB695
CmoCh04G007310	ClCG07G011600	Watermelon (Charleston Gray)	cmowcgB672
CmoCh04G007310	CSPI04G06400	Wild cucumber (PI 183967)	cmocpiB715
CmoCh04G007310	Lsi07G007210	Bottle gourd (USVL1VR-Ls)	cmolsiB693
CmoCh04G007310	Cp4.1LG01g00550	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G007310	MELO3C016296.2	Melon (DHL92) v3.6.1	cmomedB789
CmoCh04G007310	CsaV3_4G006610	Cucumber (Chinese Long) v3	cmocucB0833
CmoCh04G007310	Cla97C07G138340	Watermelon (97103) v2	cmowmbB750
CmoCh04G007310	Bhi01G002301	Wax gourd	cmowgoB0850
CmoCh04G007310	CsGy4G006320	Cucumber (Gy14) v2	cgybcmoB521
CmoCh04G007310	Carg13072	Silver-seed gourd	carcmoB0058

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G007310	Cucumber (Chinese Long) v3	cmocucB0860
CmoCh04G007310	Watermelon (97103) v2	cmowmbB677
CmoCh04G007310	Wax gourd	cmowgoB0825
CmoCh04G007310	Cucurbita moschata (Rifu)	cmocmoB264
CmoCh04G007310	Cucurbita moschata (Rifu)	cmocmoB285
CmoCh04G007310	Cucumber (Gy14) v1	cgycmoB0833
CmoCh04G007310	Cucurbita maxima (Rimu)	cmacmoB311
CmoCh04G007310	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G007310	Wild cucumber (PI 183967)	cmocpiB734
CmoCh04G007310	Cucumber (Chinese Long) v2	cmocuB728
CmoCh04G007310	Melon (DHL92) v3.5.1	cmomeB628
CmoCh04G007310	Melon (DHL92) v3.5.1	cmomeB686
CmoCh04G007310	Watermelon (Charleston Gray)	cmowcgB637
CmoCh04G007310	Watermelon (97103) v1	cmowmB709
CmoCh04G007310	Cucurbita pepo (Zucchini)	cmocpeB661
CmoCh04G007310	Cucurbita pepo (Zucchini)	cmocpeB667
CmoCh04G007310	Bottle gourd (USVL1VR-Ls)	cmolsiB611
CmoCh04G007310	Melon (DHL92) v3.6.1	cmomedB779
CmoCh04G007310	Cucumber (Gy14) v2	cgybcmoB639
CmoCh04G007310	Melon (DHL92) v3.6.1	cmomedB717
CmoCh04G007310	Silver-seed gourd	carcmoB0492
CmoCh04G007310	Silver-seed gourd	carcmoB0804