Csa4G052580 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G052580
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionGenome sequencing data, contig C313; contains IPR021659 (Protein of unknown function DUF3252)
LocationChr4 : 4357064 .. 4357828 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAATTTACGTTCACAGTATCGCACTCATCTCTATAATCAGTAGACTCATGTCCATGGCTTCCTCAATCTCCCTTCCATCTCCTCAAACTCCGCTTCTTAAATCCTCCTTTCTCCCACAAAACCGCCGCCGCCTCCTTCTCCACCGACCATTTCCCCTGCCCGGCCGTCACGCCTCATCAACCCAACACGCTTTCCGGCCCTCCGCCGCCTTCGATTTAGCCCAGCTTCTCGGCGGAAGAGGCCTCTGCAATGGCGAGCAAGGTCTAAAAGAGGAACTCAAGAGAAACGTCGACGACAATCCAGTCCTCGCAGATGGAAGCGAAATTCCAGGAACCTCCGATAAATTACCGGTTGATAGTGTTCCAGAAGATGGGTTCGAGAAGGAATTAATGGGCTTAACCGGTGGGTTTCCCGGCGGAGAGAAAGGATTAAAAAAATTCATATCGGAGAATCCTCCTCCTCGGAAACCCTCCGCTTCAAAATCCGGCGAAATCGGCTCGATTATAAATACACAGAAACCAAAGCCGCCGGATCTTCCACTGTTGCTACCGGGAATGATTGCGATTGTGAAGAATCCTAACAATCCGTACTACATGTATTGTGGAATCGTTCAAAGAATCACAGATGGAAAAGCTGGGGTTCTTTTTGAAGGAGGAAATTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTGGAACGAAGAGAAAAAGGACCGCCGATGAAGAACCCTAAATCGGCTGGGGGTGGGCCGCTTCTTCGATGA

mRNA sequence

ATGTCCATGGCTTCCTCAATCTCCCTTCCATCTCCTCAAACTCCGCTTCTTAAATCCTCCTTTCTCCCACAAAACCGCCGCCGCCTCCTTCTCCACCGACCATTTCCCCTGCCCGGCCGTCACGCCTCATCAACCCAACACGCTTTCCGGCCCTCCGCCGCCTTCGATTTAGCCCAGCTTCTCGGCGGAAGAGGCCTCTGCAATGGCGAGCAAGGTCTAAAAGAGGAACTCAAGAGAAACGTCGACGACAATCCAGTCCTCGCAGATGGAAGCGAAATTCCAGGAACCTCCGATAAATTACCGGTTGATAGTGTTCCAGAAGATGGGTTCGAGAAGGAATTAATGGGCTTAACCGGTGGGTTTCCCGGCGGAGAGAAAGGATTAAAAAAATTCATATCGGAGAATCCTCCTCCTCGGAAACCCTCCGCTTCAAAATCCGGCGAAATCGGCTCGATTATAAATACACAGAAACCAAAGCCGCCGGATCTTCCACTGTTGCTACCGGGAATGATTGCGATTGTGAAGAATCCTAACAATCCGTACTACATGTATTGTGGAATCGTTCAAAGAATCACAGATGGAAAAGCTGGGGTTCTTTTTGAAGGAGGAAATTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTGGAACGAAGAGAAAAAGGACCGCCGATGAAGAACCCTAAATCGGCTGGGGGTGGGCCGCTTCTTCGATGA

Coding sequence (CDS)

ATGTCCATGGCTTCCTCAATCTCCCTTCCATCTCCTCAAACTCCGCTTCTTAAATCCTCCTTTCTCCCACAAAACCGCCGCCGCCTCCTTCTCCACCGACCATTTCCCCTGCCCGGCCGTCACGCCTCATCAACCCAACACGCTTTCCGGCCCTCCGCCGCCTTCGATTTAGCCCAGCTTCTCGGCGGAAGAGGCCTCTGCAATGGCGAGCAAGGTCTAAAAGAGGAACTCAAGAGAAACGTCGACGACAATCCAGTCCTCGCAGATGGAAGCGAAATTCCAGGAACCTCCGATAAATTACCGGTTGATAGTGTTCCAGAAGATGGGTTCGAGAAGGAATTAATGGGCTTAACCGGTGGGTTTCCCGGCGGAGAGAAAGGATTAAAAAAATTCATATCGGAGAATCCTCCTCCTCGGAAACCCTCCGCTTCAAAATCCGGCGAAATCGGCTCGATTATAAATACACAGAAACCAAAGCCGCCGGATCTTCCACTGTTGCTACCGGGAATGATTGCGATTGTGAAGAATCCTAACAATCCGTACTACATGTATTGTGGAATCGTTCAAAGAATCACAGATGGAAAAGCTGGGGTTCTTTTTGAAGGAGGAAATTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTGGAACGAAGAGAAAAAGGACCGCCGATGAAGAACCCTAAATCGGCTGGGGGTGGGCCGCTTCTTCGATGA

Protein sequence

MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR*
Homology
[Close]
BLAST of Csa4G052580 vs. Swiss-Prot
Match: NDHS_ARATH (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana GN=ndhS PE=1 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 5.1e-69
Identity = 137/239 (57.32%), Postives = 172/239 (71.97%), Query Frame = 1 

Query: 5   SSISLPSPQTPLLKSSFLPQNRRRLLLHRP-FPLPGRHASSTQHAFRPSAAFDLAQLLGG 64
           SSI++P+ +TP+ +S FL Q  +   ++R  FP P + +   Q   +    F+L +++GG
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQ--VKAMGKFNLWEVMGG 63

Query: 65  RGLCNGEQGLKEELKRNVDDNPVL--ADGSEIPGTSDKLPVD-SVPEDGFEKELMGLTGG 124
           RGLCNGE+G+++EL+RN++D      A+ +E    SD   +   VPEDGFEKE+MGLTGG
Sbjct: 64  RGLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 125 FPGGEKGLKKFISENPPPRKPS--ASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPN 184
           FPGGEKGLK FI +NPPP  P   A +  +  ++   +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 185 NPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLL 238
           +PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNPKS    PL+
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLI 240

[Close]
BLAST of Csa4G052580 vs. TrEMBL
Match: A0A0A0KV29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052580 PE=4 SV=1)

HSP 1 Score: 488.0 bits (1255), Expect = 6.4e-135
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 1 

Query: 1   MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL 60
           MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL
Sbjct: 1   MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL 60

Query: 61  LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 120
           LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG
Sbjct: 61  LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 120

Query: 121 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 121 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 239
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 238

[Close]
BLAST of Csa4G052580 vs. TrEMBL
Match: A0A061G593_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_016470 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.6e-75
Identity = 156/232 (67.24%), Postives = 174/232 (75.00%), Query Frame = 1 

Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPS---AAFDLAQ 62
           MASSI+LPS Q  LL+S FL QN    + HRP      H S+     +P    A FDL +
Sbjct: 1   MASSITLPSLQGSLLRSRFLGQNP---ISHRP------HKSAFPVVKQPKTFCAKFDLFE 60

Query: 63  LLGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTG 122
           +LGGRGLCNGE+GL+ ELKRNV +    A   E    S  +   SVPED FEKELMGLTG
Sbjct: 61  ILGGRGLCNGEKGLEVELKRNVLEASSPATKDEQRSGSTAI---SVPEDAFEKELMGLTG 120

Query: 123 GFPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNN 182
           GFPGGEKGLKKF+ ENPPP K S S S  I  +  T+KPKPP+LPLL+PGMIAIVKNPNN
Sbjct: 121 GFPGGEKGLKKFVEENPPPAKQSVSDSVSIARLAATKKPKPPELPLLMPGMIAIVKNPNN 180

Query: 183 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSA 232
           P+YMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNPKSA
Sbjct: 181 PFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPKSA 220

[Close]
BLAST of Csa4G052580 vs. TrEMBL
Match: A0A067GD15_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044915mg PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 9.7e-75
Identity = 144/231 (62.34%), Postives = 178/231 (77.06%), Query Frame = 1 

Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62
           MASSI+L + Q PLL+S FL QN+      +P+    +  S+     +P A FDL +++G
Sbjct: 1   MASSINLHTLQGPLLQSHFLGQNQVSYRPKKPYLATPKQPSTV---LKPCAKFDLFEIMG 60

Query: 63  GRGLCNGEQGLKEELKRNV-DDNPVLADGSEIPGTSDKLPVD-SVPEDGFEKELMGLTGG 122
           GRGLCNGE+G++ ELKRNV +    +AD  E    S  +P   SVPED FEKE+MGLTGG
Sbjct: 61  GRGLCNGEKGIELELKRNVTEQESQVADKEEESSASTAMPSTLSVPEDAFEKEMMGLTGG 120

Query: 123 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182
           FPGGEKGL++FI +NPPP+KP  + SG++ ++  T+KPKPP+ PLL+PGM AIVKNPNNP
Sbjct: 121 FPGGEKGLQQFIEQNPPPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNP 180

Query: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSA 232
           +YMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPP +NPKSA
Sbjct: 181 FYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSA 228

[Close]
BLAST of Csa4G052580 vs. TrEMBL
Match: V4TGV2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024562mg PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.8e-73
Identity = 143/231 (61.90%), Postives = 174/231 (75.32%), Query Frame = 1 

Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62
           MASSI+L + Q PLLKS FL QN+      +P+    +  S      +P A FDL +++G
Sbjct: 1   MASSINLHTLQGPLLKSHFLGQNQVSYRPQKPYLATPKQPSKV---LKPCAKFDLFEIMG 60

Query: 63  GRGLCNGEQGLKEELKRNV-DDNPVLADGSEIPGTSDKLPVD-SVPEDGFEKELMGLTGG 122
           GRGLCNGE+G++ ELKRNV +    +AD  E    S  +P   S PE  FEKE+MGLTGG
Sbjct: 61  GRGLCNGEKGIELELKRNVTEQESQVADKEEESSASTAMPSTLSAPEGAFEKEMMGLTGG 120

Query: 123 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182
           FPGGEKGL+ FI +NPPP+KP  + SG++ ++  T+KPKPP+ PLL+PGM AIVKNPNNP
Sbjct: 121 FPGGEKGLQLFIEQNPPPQKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNP 180

Query: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSA 232
           +YMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPP +NPKSA
Sbjct: 181 FYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSA 228

[Close]
BLAST of Csa4G052580 vs. TrEMBL
Match: M5WAD8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010487mg PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 9.1e-73
Identity = 146/247 (59.11%), Postives = 180/247 (72.87%), Query Frame = 1 

Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRP-FPLPGRHASSTQHAFRPSAAFDLAQLL 62
           MAS+I+LPS Q PLLKS+FL +N      H+  F +   H   + H+ RP A F+L+++L
Sbjct: 1   MASNITLPSFQGPLLKSNFLGRNDLSNRAHKSSFTI---HKQPSIHSLRPCAKFNLSEIL 60

Query: 63  GGRGLCNGEQGLKEELKRNVDDNPVLAD----------GSEIPGTSDKLPVDSVPEDGFE 122
           GGRGLCNGE+GL +EL RNV++   + +            E   +S    + SV ED FE
Sbjct: 61  GGRGLCNGEEGLLQELTRNVEEQKDVEEQVSAAVAAETDEEKSDSSSASALKSVQEDAFE 120

Query: 123 KELMGLTGGFPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMI 182
           KELMGLTGGFPGGEKGL+KFI +NPPP+KP  + SG   ++++++KPK P+LPLLLPGMI
Sbjct: 121 KELMGLTGGFPGGEKGLQKFIEKNPPPKKPLVADSGSTAALVSSKKPKAPELPLLLPGMI 180

Query: 183 AIVKNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSA 239
           AIV NPN+PYY YCGIVQRITDGKAGVLFEGGNWDRLITFRL EL RR+KGPP KNPKSA
Sbjct: 181 AIVNNPNSPYYKYCGIVQRITDGKAGVLFEGGNWDRLITFRLGELLRRDKGPPGKNPKSA 240

[Close]
BLAST of Csa4G052580 vs. TAIR10
Match: AT4G23890.1 (AT4G23890.1 unknown protein)

HSP 1 Score: 262.3 bits (669), Expect = 2.9e-70
Identity = 137/239 (57.32%), Postives = 172/239 (71.97%), Query Frame = 1 

Query: 5   SSISLPSPQTPLLKSSFLPQNRRRLLLHRP-FPLPGRHASSTQHAFRPSAAFDLAQLLGG 64
           SSI++P+ +TP+ +S FL Q  +   ++R  FP P + +   Q   +    F+L +++GG
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQ--VKAMGKFNLWEVMGG 63

Query: 65  RGLCNGEQGLKEELKRNVDDNPVL--ADGSEIPGTSDKLPVD-SVPEDGFEKELMGLTGG 124
           RGLCNGE+G+++EL+RN++D      A+ +E    SD   +   VPEDGFEKE+MGLTGG
Sbjct: 64  RGLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 125 FPGGEKGLKKFISENPPPRKPS--ASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPN 184
           FPGGEKGLK FI +NPPP  P   A +  +  ++   +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 185 NPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLL 238
           +PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNPKS    PL+
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLI 240

[Close]
BLAST of Csa4G052580 vs. NCBI nr
Match: gi|700198250|gb|KGN53408.1| (hypothetical protein Csa_4G052580 [Cucumis sativus])

HSP 1 Score: 488.0 bits (1255), Expect = 9.2e-135
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 1 

Query: 1   MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL 60
           MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL
Sbjct: 1   MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL 60

Query: 61  LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 120
           LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG
Sbjct: 61  LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 120

Query: 121 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 121 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 239
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 238

[Close]
BLAST of Csa4G052580 vs. NCBI nr
Match: gi|449462539|ref|XP_004148998.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 476.1 bits (1224), Expect = 3.6e-131
Identity = 234/238 (98.32%), Postives = 235/238 (98.74%), Query Frame = 1 

Query: 1   MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL 60
           MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL
Sbjct: 1   MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL 60

Query: 61  LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 120
           LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG
Sbjct: 61  LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 120

Query: 121 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 121 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 239
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSA   PLL+
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQ 238

[Close]
BLAST of Csa4G052580 vs. NCBI nr
Match: gi|659102099|ref|XP_008451952.1| (PREDICTED: uncharacterized protein LOC103493099 [Cucumis melo])

HSP 1 Score: 454.1 bits (1167), Expect = 1.5e-124
Identity = 220/236 (93.22%), Postives = 229/236 (97.03%), Query Frame = 1 

Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62
           MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASST HAFRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122
           GRGLCNGE+G++EELKRNVDDNPV+ADG+EIP TS KLPVDSVPEDGFEKELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 123 GGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNPYY 182
           GGEKGLKKFISENPPPRKPSASKSGEIGSI+NT+KPKPPDLPLLLPGMIAIVKNPNNPYY
Sbjct: 121 GGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYY 180

Query: 183 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 239
           MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SA   P L+
Sbjct: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQ 236

[Close]
BLAST of Csa4G052580 vs. NCBI nr
Match: gi|590679252|ref|XP_007040528.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 290.0 bits (741), Expect = 3.7e-75
Identity = 156/232 (67.24%), Postives = 174/232 (75.00%), Query Frame = 1 

Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPS---AAFDLAQ 62
           MASSI+LPS Q  LL+S FL QN    + HRP      H S+     +P    A FDL +
Sbjct: 1   MASSITLPSLQGSLLRSRFLGQNP---ISHRP------HKSAFPVVKQPKTFCAKFDLFE 60

Query: 63  LLGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTG 122
           +LGGRGLCNGE+GL+ ELKRNV +    A   E    S  +   SVPED FEKELMGLTG
Sbjct: 61  ILGGRGLCNGEKGLEVELKRNVLEASSPATKDEQRSGSTAI---SVPEDAFEKELMGLTG 120

Query: 123 GFPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNN 182
           GFPGGEKGLKKF+ ENPPP K S S S  I  +  T+KPKPP+LPLL+PGMIAIVKNPNN
Sbjct: 121 GFPGGEKGLKKFVEENPPPAKQSVSDSVSIARLAATKKPKPPELPLLMPGMIAIVKNPNN 180

Query: 183 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSA 232
           P+YMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNPKSA
Sbjct: 181 PFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPKSA 220

[Close]
BLAST of Csa4G052580 vs. NCBI nr
Match: gi|694354985|ref|XP_009358605.1| (PREDICTED: uncharacterized protein LOC103949228 [Pyrus x bretschneideri])

HSP 1 Score: 289.3 bits (739), Expect = 6.3e-75
Identity = 150/248 (60.48%), Postives = 182/248 (73.39%), Query Frame = 1 

Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRP-FPLPGRHASSTQHAFRPSAAFDLAQLL 62
           MASSI+LPS Q PLLKS+FL +N      H+  F +   H   + H+ RPSA F+L+++L
Sbjct: 1   MASSITLPSLQGPLLKSNFLGRNDLSNRAHKSSFAV---HKQPSTHSLRPSAKFNLSEIL 60

Query: 63  GGRGLCNGEQGLKEELKRNVDDNPVLADGS-----------EIPGTSDKLPVDSVPEDGF 122
           GGRGLCNGE GL +EL RNV++   + +             E P  S    ++SV EDGF
Sbjct: 61  GGRGLCNGEAGLLQELTRNVEEQKNVEEEQVSAAAAAKTEEEKPDGSATAAIESVEEDGF 120

Query: 123 EKELMGLTGGFPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGM 182
           +KELMGLTGGFPGGEKGL+KFI +NPPP+K S + SG   ++++T+KPK P+LPLLLPGM
Sbjct: 121 DKELMGLTGGFPGGEKGLRKFIEKNPPPKKSSIAISGSTAALVSTKKPKAPELPLLLPGM 180

Query: 183 IAIVKNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKS 239
           IAIV NPN+PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRL EL RR+KGPP KNPKS
Sbjct: 181 IAIVNNPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLGELMRRDKGPPGKNPKS 240

The following BLAST results are available for this feature:
BLAST of Csa4G052580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDHS_ARATH5.1e-6957.32NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana ... [more]
BLAST of Csa4G052580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV29_CUCSA6.4e-135100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052580 PE=4 SV=1[more]
A0A061G593_THECC2.6e-7567.24Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_016470 PE=4 SV=1[more]
A0A067GD15_CITSI9.7e-7562.34Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044915mg PE=4 SV=1[more]
V4TGV2_9ROSI1.8e-7361.90Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024562mg PE=4 SV=1[more]
M5WAD8_PRUPE9.1e-7359.11Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010487mg PE=4 SV=1[more]
BLAST of Csa4G052580 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23890.12.9e-7057.32 unknown protein[more]
BLAST of Csa4G052580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198250|gb|KGN53408.1|9.2e-135100.00hypothetical protein Csa_4G052580 [Cucumis sativus][more]
gi|449462539|ref|XP_004148998.1|3.6e-13198.32PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X1 [C... [more]
gi|659102099|ref|XP_008451952.1|1.5e-12493.22PREDICTED: uncharacterized protein LOC103493099 [Cucumis melo][more]
gi|590679252|ref|XP_007040528.1|3.7e-7567.24Uncharacterized protein isoform 1 [Theobroma cacao][more]
gi|694354985|ref|XP_009358605.1|6.3e-7560.48PREDICTED: uncharacterized protein LOC103949228 [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021659NdhS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0065007 biological regulation
biological_process GO:0006812 cation transport
biological_process GO:0044237 cellular metabolic process
biological_process GO:0044763 single-organism cellular process
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0016020 membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU085854cucumber EST collection version 3.0transcribed_cluster
CU114834cucumber EST collection version 3.0transcribed_cluster
CU122754cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G052580.1Csa4G052580.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU114834CU114834transcribed_cluster
CU122754CU122754transcribed_cluster
CU085854CU085854transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021659Protein of unknown function DUF3252PFAMPF11623DUF3252coord: 166..217
score: 9.5
NoneNo IPR availablePANTHERPTHR35494FAMILY NOT NAMEDcoord: 1..231
score: 1.9E
NoneNo IPR availablePANTHERPTHR35494:SF1SUBFAMILY NOT NAMEDcoord: 1..231
score: 1.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G052580Cla012805Watermelon (97103) v1cuwmB305
Csa4G052580MELO3C016296Melon (DHL92) v3.5.1cumeB301
Csa4G052580ClCG07G011600Watermelon (Charleston Gray)cuwcgB324
Csa4G052580Lsi07G007210Bottle gourd (USVL1VR-Ls)culsiB304
Csa4G052580MELO3C016296.2Melon (DHL92) v3.6.1cumedB285
Csa4G052580Cla97C07G138340Watermelon (97103) v2cuwmbB321
Csa4G052580Bhi01G002301Wax gourdcuwgoB365
Csa4G052580CSPI04G06400Wild cucumber (PI 183967)cpicuB182
Csa4G052580Cucsa.114990Cucumber (Gy14) v1cgycuB146
Csa4G052580CmaCh04G006860Cucurbita maxima (Rimu)cmacuB713
Csa4G052580CmoCh04G007310Cucurbita moschata (Rifu)cmocuB705
Csa4G052580Cp4.1LG01g00550Cucurbita pepo (Zucchini)cpecuB406
Csa4G052580CsGy4G006320Cucumber (Gy14) v2cgybcuB165
Csa4G052580Carg13072Silver-seed gourdcarcuB0044
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G052580Melon (DHL92) v3.5.1cumeB276
Csa4G052580Melon (DHL92) v3.5.1cumeB312
Csa4G052580Watermelon (Charleston Gray)cuwcgB289
Csa4G052580Watermelon (97103) v1cuwmB325
Csa4G052580Watermelon (97103) v1cuwmB330
Csa4G052580Cucurbita pepo (Zucchini)cpecuB221
Csa4G052580Bottle gourd (USVL1VR-Ls)culsiB245
Csa4G052580Bottle gourd (USVL1VR-Ls)culsiB298
Csa4G052580Cucumber (Gy14) v2cgybcuB124
Csa4G052580Cucumber (Gy14) v2cgybcuB222
Csa4G052580Melon (DHL92) v3.6.1cumedB257
Csa4G052580Melon (DHL92) v3.6.1cumedB281
Csa4G052580Melon (DHL92) v3.6.1cumedB297
Csa4G052580Silver-seed gourdcarcuB0389
Csa4G052580Silver-seed gourdcarcuB0617
Csa4G052580Watermelon (97103) v2cuwmbB269
Csa4G052580Watermelon (97103) v2cuwmbB311
Csa4G052580Wax gourdcuwgoB363
Csa4G052580Cucumber (Chinese Long) v2cucuB093
Csa4G052580Cucumber (Chinese Long) v2cucuB141
Csa4G052580Cucumber (Gy14) v1cgycuB433
Csa4G052580Cucurbita maxima (Rimu)cmacuB290
Csa4G052580Cucurbita maxima (Rimu)cmacuB337
Csa4G052580Cucurbita moschata (Rifu)cmocuB277
Csa4G052580Cucurbita moschata (Rifu)cmocuB325