Cp4.1LG01g00550 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g00550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Chlororespiratory reduction31
Location	Cp4.1LG01 : 3561559 .. 3562275 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTCCATCTCCCTCCCTTCTCCCCAGTCTCCCCTTCTCAAATCCACCTTCCTCGGCCAAACTACCCGCCGCTTTCATCTCCACCGTCAATTCCCCCTTCCCCGTCGCGCATCACCAAGCCATCACACTTTCCGGCCCTCCGCCTCCTTCGATTTGGCCCAGCTTCTCGGCGGAAGAGGCCTTTGCAATGGCGAGAAAGGTCTCAAAGAGGAACTGAAGCGAAACGTGGTGGAGGAAACAATCGGCGCCGAAATTCCGGAAACAACCGAGAAATTAGCCGTCGATAAGGTTCCAGAAGATGGATTCGACAAGGAATTGATGGGATTAACCGGCGGATTTCCTGGCGGAGAGAAAGGATTGCGGAAATTCATATCGGAAAATCCTCCTCCTCCGCCTCCGAAACCTTCCGCTTCAAAATCCATCGAAATCGGTGCGATTCCGAGTTCGCAAAAACCAAAACCACCGGATCTGCCGCTGTTGCTGCCCGGAATGATCGCGATTGTGAAGAATCCGAACAGTCCATATTATATGTACTGCGGAATTGTACAGAGAATCACAGATGGAAAGGCAGGAGTTCTTTTCGAAGGAGGAAATTGGGATCGATTGATTACGTTTCGGCTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAATCCAAGATCGGCTGTTCTTGAACCTCTTCTTCAAAAGGATTCCCAATGA

mRNA sequence

ATGGCGTCCTCCATCTCCCTCCCTTCTCCCCAGTCTCCCCTTCTCAAATCCACCTTCCTCGGCCAAACTACCCGCCGCTTTCATCTCCACCGTCAATTCCCCCTTCCCCGTCGCGCATCACCAAGCCATCACACTTTCCGGCCCTCCGCCTCCTTCGATTTGGCCCAGCTTCTCGGCGGAAGAGGCCTTTGCAATGGCGAGAAAGGTCTCAAAGAGGAACTGAAGCGAAACGTGGTGGAGGAAACAATCGGCGCCGAAATTCCGGAAACAACCGAGAAATTAGCCGTCGATAAGGTTCCAGAAGATGGATTCGACAAGGAATTGATGGGATTAACCGGCGGATTTCCTGGCGGAGAGAAAGGATTGCGGAAATTCATATCGGAAAATCCTCCTCCTCCGCCTCCGAAACCTTCCGCTTCAAAATCCATCGAAATCGGTGCGATTCCGAGTTCGCAAAAACCAAAACCACCGGATCTGCCGCTGTTGCTGCCCGGAATGATCGCGATTGTGAAGAATCCGAACAGTCCATATTATATGTACTGCGGAATTGTACAGAGAATCACAGATGGAAAGGCAGGAGTTCTTTTCGAAGGAGGAAATTGGGATCGATTGATTACGTTTCGGCTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAATCCAAGATCGGCTGTTCTTGAACCTCTTCTTCAAAAGGATTCCCAATGA

Coding sequence (CDS)

ATGGCGTCCTCCATCTCCCTCCCTTCTCCCCAGTCTCCCCTTCTCAAATCCACCTTCCTCGGCCAAACTACCCGCCGCTTTCATCTCCACCGTCAATTCCCCCTTCCCCGTCGCGCATCACCAAGCCATCACACTTTCCGGCCCTCCGCCTCCTTCGATTTGGCCCAGCTTCTCGGCGGAAGAGGCCTTTGCAATGGCGAGAAAGGTCTCAAAGAGGAACTGAAGCGAAACGTGGTGGAGGAAACAATCGGCGCCGAAATTCCGGAAACAACCGAGAAATTAGCCGTCGATAAGGTTCCAGAAGATGGATTCGACAAGGAATTGATGGGATTAACCGGCGGATTTCCTGGCGGAGAGAAAGGATTGCGGAAATTCATATCGGAAAATCCTCCTCCTCCGCCTCCGAAACCTTCCGCTTCAAAATCCATCGAAATCGGTGCGATTCCGAGTTCGCAAAAACCAAAACCACCGGATCTGCCGCTGTTGCTGCCCGGAATGATCGCGATTGTGAAGAATCCGAACAGTCCATATTATATGTACTGCGGAATTGTACAGAGAATCACAGATGGAAAGGCAGGAGTTCTTTTCGAAGGAGGAAATTGGGATCGATTGATTACGTTTCGGCTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAATCCAAGATCGGCTGTTCTTGAACCTCTTCTTCAAAAGGATTCCCAATGA

Protein sequence

MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLPRRASPSHHTFRPSASFDLAQLLGGRGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ

Homology

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BLAST of Cp4.1LG01g00550 vs. Swiss-Prot
Match: NDHS_ARATH (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana GN=ndhS PE=1 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.8e-75
Identity = 147/241 (61.00%), Postives = 189/241 (78.42%), Query Frame = 1


Query: 3   SSISLPSPQSPLLKSTFLGQTTRRFHLHRQ-FPLPRRASPSHHTFRPSASFDLAQLLGGR 62
           SSI++P+ ++P+ +S FLGQT +   ++R  FP P++ S  +   +    F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGEKGLKEELKRNVVEE--TIGAEIPETTEKLAVD-----KVPEDGFDKELMGLTGG 122
           GLCNGEKG+++EL+RN+ +E  T  AE  ET E+ + D     KVPEDGF+KE+MGLTGG
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNET-ERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 123 FPGGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPN 182
           FPGGEKGL+ FI +NPPPPPP P A +  +  A+ + +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 183 SPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 236
           SPY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEPL++
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 242

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BLAST of Cp4.1LG01g00550 vs. TrEMBL
Match: A0A0A0KV29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052580 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.1e-99
Identity = 192/238 (80.67%), Postives = 210/238 (88.24%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLP-RRASPSHHTFRPSASFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL Q  RR  LHR FPLP R AS + H FRPSA+FDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+GLKEELKRNV +  +   G+EIP T++KL VD VPEDGF+KELMGLTGGFP
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122

Query: 121 GGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFISENPPP   KPSASKS EIG+I ++QKPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 123 GGEKGLKKFISENPPPR--KPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 235
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SA   PLL+
Sbjct: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 238

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BLAST of Cp4.1LG01g00550 vs. TrEMBL
Match: A0A061G593_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_016470 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 2.7e-77
Identity = 156/239 (65.27%), Postives = 184/239 (76.99%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQ-FPLPRRASPSHHTFRPSASFDLAQLLG 60
           MASSI+LPS Q  LL+S FLGQ       H+  FP+ ++      TF   A FDL ++LG
Sbjct: 1   MASSITLPSLQGSLLRSRFLGQNPISHRPHKSAFPVVKQPK----TF--CAKFDLFEILG 60

Query: 61  GRGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGE 120
           GRGLCNGEKGL+ ELKRNV+E +  A   E         VPED F+KELMGLTGGFPGGE
Sbjct: 61  GRGLCNGEKGLEVELKRNVLEASSPATKDEQRSGSTAISVPEDAFEKELMGLTGGFPGGE 120

Query: 121 KGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYM 180
           KGL+KF+ ENPPP   K S S S+ I  + +++KPKPP+LPLL+PGMIAIVKNPN+P+YM
Sbjct: 121 KGLKKFVEENPPPA--KQSVSDSVSIARLAATKKPKPPELPLLMPGMIAIVKNPNNPFYM 180

Query: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 239
           YCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNP+SAVLE +L+KD +
Sbjct: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPKSAVLEAMLEKDQK 231

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BLAST of Cp4.1LG01g00550 vs. TrEMBL
Match: M5WAD8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010487mg PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 3.3e-75
Identity = 158/252 (62.70%), Postives = 187/252 (74.21%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQ-FPLPRRASPSHHTFRPSASFDLAQLLG 60
           MAS+I+LPS Q PLLKS FLG+       H+  F + ++  PS H+ RP A F+L+++LG
Sbjct: 1   MASNITLPSFQGPLLKSNFLGRNDLSNRAHKSSFTIHKQ--PSIHSLRPCAKFNLSEILG 60

Query: 61  GRGLCNGEKGLKEELKRNV-----VEETIGAEIPETTEK--------LAVDKVPEDGFDK 120
           GRGLCNGE+GL +EL RNV     VEE + A +   T++         A+  V ED F+K
Sbjct: 61  GRGLCNGEEGLLQELTRNVEEQKDVEEQVSAAVAAETDEEKSDSSSASALKSVQEDAFEK 120

Query: 121 ELMGLTGGFPGGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGM 180
           ELMGLTGGFPGGEKGL+KFI +NPPP   KP  + S    A+ SS+KPK P+LPLLLPGM
Sbjct: 121 ELMGLTGGFPGGEKGLQKFIEKNPPPK--KPLVADSGSTAALVSSKKPKAPELPLLLPGM 180

Query: 181 IAIVKNPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRS 239
           IAIV NPNSPYY YCGIVQRITDGKAGVLFEGGNWDRLITFRL EL RR+KGPP KNP+S
Sbjct: 181 IAIVNNPNSPYYKYCGIVQRITDGKAGVLFEGGNWDRLITFRLGELLRRDKGPPGKNPKS 240

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BLAST of Cp4.1LG01g00550 vs. TrEMBL
Match: V4LWB0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10027518mg PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.3e-74
Identity = 148/240 (61.67%), Postives = 185/240 (77.08%), Query Frame = 1


Query: 3   SSISLPSPQSPLLKSTFLGQTTRRFHLHRQ-FPLPRRASPSHHTFRPSASFDLAQLLGGR 62
           +S ++P+  SP+ K+ FLGQT      +R  FP P++ S  H   +  A F+L +++GGR
Sbjct: 4   TSFTIPTIPSPIRKTNFLGQTHLFAAANRSIFPPPKQLSNPHQV-KAMAKFNLWEVMGGR 63

Query: 63  GLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVD-----KVPEDGFDKELMGLTGGFP 122
           GLCNGEKG+++ELKRN+ EET  AE     E    D     KVPE+GFDKE+MGLTGGFP
Sbjct: 64  GLCNGEKGIEKELKRNIEEETSKAESVTEKESDGDDNTLSFKVPENGFDKEMMGLTGGFP 123

Query: 123 GGEKGLRKFISENPPPPPPK-PSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNS 182
           GGEKGL+ FI +NPPPPPP+ P A +  ++ A+ + +KP+ P+LPLL+PGMIAIVKN N+
Sbjct: 124 GGEKGLQTFIEQNPPPPPPQQPPAKRGTDVSAVAADKKPRAPELPLLMPGMIAIVKNANN 183

Query: 183 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQK 236
           PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S VLEPLL++
Sbjct: 184 PYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCVLEPLLEQ 242

[Close]

BLAST of Cp4.1LG01g00550 vs. TrEMBL
Match: D7M902_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_914207 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.4e-73
Identity = 150/242 (61.98%), Postives = 188/242 (77.69%), Query Frame = 1


Query: 3   SSISLPSPQSPLLKSTFLGQTTRRFHLHRQ--FPLPRRASPSHHTFRPSASFDLAQLLGG 62
           SSI++P+ ++P+ +S FLGQT  +F    Q  FP P++ S  +   +    F+L +++GG
Sbjct: 4   SSITIPTMRTPIHRSKFLGQT-HQFSTANQSIFPPPKQQSKVYQV-KAMGKFNLWEVMGG 63

Query: 63  RGLCNGEKGLKEELKRNVVE--ETIGAEIPETTEKLAVD-----KVPEDGFDKELMGLTG 122
           RGLCNGEKG+++ELKRN+ +  ET  AE  ET EK + D     KVPEDGFDKE+MGLTG
Sbjct: 64  RGLCNGEKGIEKELKRNIEDGQETSKAENNET-EKESDDSNLSFKVPEDGFDKEMMGLTG 123

Query: 123 GFPGGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNP 182
           GFPGGEKGL+ FI +NPPPPP  P A +  +  A+ + +KPK P+LPLL+PGMIAIVKN 
Sbjct: 124 GFPGGEKGLQTFIEKNPPPPPTPPPAKRGTDASAVVTDKKPKAPELPLLMPGMIAIVKNQ 183

Query: 183 NSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLL 236
           NSPY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEPL+
Sbjct: 184 NSPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLI 242

[Close]

BLAST of Cp4.1LG01g00550 vs. TAIR10
Match: AT4G23890.1 (AT4G23890.1 unknown protein)

HSP 1 Score: 283.1 bits (723), Expect = 1.6e-76
Identity = 147/241 (61.00%), Postives = 189/241 (78.42%), Query Frame = 1


Query: 3   SSISLPSPQSPLLKSTFLGQTTRRFHLHRQ-FPLPRRASPSHHTFRPSASFDLAQLLGGR 62
           SSI++P+ ++P+ +S FLGQT +   ++R  FP P++ S  +   +    F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGEKGLKEELKRNVVEE--TIGAEIPETTEKLAVD-----KVPEDGFDKELMGLTGG 122
           GLCNGEKG+++EL+RN+ +E  T  AE  ET E+ + D     KVPEDGF+KE+MGLTGG
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNET-ERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 123 FPGGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPN 182
           FPGGEKGL+ FI +NPPPPPP P A +  +  A+ + +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 183 SPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 236
           SPY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEPL++
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 242

[Close]

BLAST of Cp4.1LG01g00550 vs. NCBI nr
Match: gi|449462539|ref|XP_004148998.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 388.3 bits (996), Expect = 9.9e-105
Identity = 200/242 (82.64%), Postives = 217/242 (89.67%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLP-RRASPSHHTFRPSASFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL Q  RR  LHR FPLP R AS + H FRPSA+FDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+GLKEELKRNV +  +   G+EIP T++KL VD VPEDGF+KELMGLTGGFP
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122

Query: 121 GGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFISENPPP   KPSASKS EIG+I ++QKPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 123 GGEKGLKKFISENPPPR--KPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 239
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEPLLQKD
Sbjct: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD 242

[Close]

BLAST of Cp4.1LG01g00550 vs. NCBI nr
Match: gi|659102099|ref|XP_008451952.1| (PREDICTED: uncharacterized protein LOC103493099 [Cucumis melo])

HSP 1 Score: 387.9 bits (995), Expect = 1.3e-104
Identity = 199/242 (82.23%), Postives = 216/242 (89.26%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLP-RRASPSHHTFRPSASFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL Q  RR  LHR FPLP R AS +HH FRPSA+FDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+G++EELKRNV +  +   G EIPET+ KL VD VPEDGF+KELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 121 GGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFISENPPP   KPSASKS EIG+I +++KPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 121 GGEKGLKKFISENPPPR--KPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 239
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEP LQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKD 240

[Close]

BLAST of Cp4.1LG01g00550 vs. NCBI nr
Match: gi|700198250|gb|KGN53408.1| (hypothetical protein Csa_4G052580 [Cucumis sativus])

HSP 1 Score: 370.9 bits (951), Expect = 1.6e-99
Identity = 192/238 (80.67%), Postives = 210/238 (88.24%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLP-RRASPSHHTFRPSASFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL Q  RR  LHR FPLP R AS + H FRPSA+FDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+GLKEELKRNV +  +   G+EIP T++KL VD VPEDGF+KELMGLTGGFP
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122

Query: 121 GGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFISENPPP   KPSASKS EIG+I ++QKPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 123 GGEKGLKKFISENPPPR--KPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 235
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SA   PLL+
Sbjct: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 238

[Close]

BLAST of Cp4.1LG01g00550 vs. NCBI nr
Match: gi|590679252|ref|XP_007040528.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 296.6 bits (758), Expect = 3.9e-77
Identity = 156/239 (65.27%), Postives = 184/239 (76.99%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQ-FPLPRRASPSHHTFRPSASFDLAQLLG 60
           MASSI+LPS Q  LL+S FLGQ       H+  FP+ ++      TF   A FDL ++LG
Sbjct: 1   MASSITLPSLQGSLLRSRFLGQNPISHRPHKSAFPVVKQPK----TF--CAKFDLFEILG 60

Query: 61  GRGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGE 120
           GRGLCNGEKGL+ ELKRNV+E +  A   E         VPED F+KELMGLTGGFPGGE
Sbjct: 61  GRGLCNGEKGLEVELKRNVLEASSPATKDEQRSGSTAISVPEDAFEKELMGLTGGFPGGE 120

Query: 121 KGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYM 180
           KGL+KF+ ENPPP   K S S S+ I  + +++KPKPP+LPLL+PGMIAIVKNPN+P+YM
Sbjct: 121 KGLKKFVEENPPPA--KQSVSDSVSIARLAATKKPKPPELPLLMPGMIAIVKNPNNPFYM 180

Query: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 239
           YCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNP+SAVLE +L+KD +
Sbjct: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPKSAVLEAMLEKDQK 231

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BLAST of Cp4.1LG01g00550 vs. NCBI nr
Match: gi|694354985|ref|XP_009358605.1| (PREDICTED: uncharacterized protein LOC103949228 [Pyrus x bretschneideri])

HSP 1 Score: 295.4 bits (755), Expect = 8.7e-77
Identity = 162/252 (64.29%), Postives = 187/252 (74.21%), Query Frame = 1


Query: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQ-FPLPRRASPSHHTFRPSASFDLAQLLG 60
           MASSI+LPS Q PLLKS FLG+       H+  F + ++  PS H+ RPSA F+L+++LG
Sbjct: 1   MASSITLPSLQGPLLKSNFLGRNDLSNRAHKSSFAVHKQ--PSTHSLRPSAKFNLSEILG 60

Query: 61  GRGLCNGEKGLKEELKRNVVE------ETIGA--------EIPETTEKLAVDKVPEDGFD 120
           GRGLCNGE GL +EL RNV E      E + A        E P+ +   A++ V EDGFD
Sbjct: 61  GRGLCNGEAGLLQELTRNVEEQKNVEEEQVSAAAAAKTEEEKPDGSATAAIESVEEDGFD 120

Query: 121 KELMGLTGGFPGGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPG 180
           KELMGLTGGFPGGEKGLRKFI +NPPP   K S + S    A+ S++KPK P+LPLLLPG
Sbjct: 121 KELMGLTGGFPGGEKGLRKFIEKNPPPK--KSSIAISGSTAALVSTKKPKAPELPLLLPG 180

Query: 181 MIAIVKNPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPR 238
           MIAIV NPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRL EL RR+KGPP KNP+
Sbjct: 181 MIAIVNNPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLGELMRRDKGPPGKNPK 240

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g00550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDHS_ARATH	2.8e-75	61.00	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of Cp4.1LG01g00550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV29_CUCSA	1.1e-99	80.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052580 PE=4 SV=1	[more]
A0A061G593_THECC	2.7e-77	65.27	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_016470 PE=4 SV=1	[more]
M5WAD8_PRUPE	3.3e-75	62.70	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010487mg PE=4 SV=1	[more]
V4LWB0_EUTSA	1.3e-74	61.67	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10027518mg PE=4 SV=1	[more]
D7M902_ARALL	1.4e-73	61.98	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]

BLAST of Cp4.1LG01g00550 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23890.1	1.6e-76	61.00	unknown protein	[more]

BLAST of Cp4.1LG01g00550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462539\|ref\|XP_004148998.1\|	9.9e-105	82.64	PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X1 [C...	[more]
gi\|659102099\|ref\|XP_008451952.1\|	1.3e-104	82.23	PREDICTED: uncharacterized protein LOC103493099 [Cucumis melo]	[more]
gi\|700198250\|gb\|KGN53408.1\|	1.6e-99	80.67	hypothetical protein Csa_4G052580 [Cucumis sativus]	[more]
gi\|590679252\|ref\|XP_007040528.1\|	3.9e-77	65.27	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]
gi\|694354985\|ref\|XP_009358605.1\|	8.7e-77	64.29	PREDICTED: uncharacterized protein LOC103949228 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021659	NdhS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0065007	biological regulation
biological_process	GO:0006812	cation transport
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0008150	biological_process
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016020	membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g00550.1	Cp4.1LG01g00550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021659	Protein of unknown function DUF3252	PFAM	PF11623	DUF3252	coord: 162..213 score: 1.1
None	No IPR available	PANTHER	PTHR35494	FAMILY NOT NAMED	coord: 1..238 score: 2.8E
None	No IPR available	PANTHER	PTHR35494:SF1	SUBFAMILY NOT NAMED	coord: 1..238 score: 2.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g00550	Cucsa.114990	Cucumber (Gy14) v1	cgycpeB0269
Cp4.1LG01g00550	CmaCh04G006860	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g00550	CmoCh04G007310	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g00550	Cla012805	Watermelon (97103) v1	cpewmB422
Cp4.1LG01g00550	Csa4G052580	Cucumber (Chinese Long) v2	cpecuB406
Cp4.1LG01g00550	MELO3C016296	Melon (DHL92) v3.5.1	cpemeB427
Cp4.1LG01g00550	ClCG07G011600	Watermelon (Charleston Gray)	cpewcgB408
Cp4.1LG01g00550	CSPI04G06400	Wild cucumber (PI 183967)	cpecpiB405
Cp4.1LG01g00550	Lsi07G007210	Bottle gourd (USVL1VR-Ls)	cpelsiB378
Cp4.1LG01g00550	MELO3C016296.2	Melon (DHL92) v3.6.1	cpemedB499
Cp4.1LG01g00550	CsaV3_4G006610	Cucumber (Chinese Long) v3	cpecucB0503
Cp4.1LG01g00550	Bhi01G002301	Wax gourd	cpewgoB0518
Cp4.1LG01g00550	CsGy4G006320	Cucumber (Gy14) v2	cgybcpeB508
Cp4.1LG01g00550	Carg13072	Silver-seed gourd	carcpeB0061

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g00550	Cucumber (Chinese Long) v3	cpecucB0538
Cp4.1LG01g00550	Cucurbita pepo (Zucchini)	cpecpeB206
Cp4.1LG01g00550	Cucurbita pepo (Zucchini)	cpecpeB233
Cp4.1LG01g00550	Cucurbita maxima (Rimu)	cmacpeB324
Cp4.1LG01g00550	Cucurbita maxima (Rimu)	cmacpeB350
Cp4.1LG01g00550	Cucurbita moschata (Rifu)	cmocpeB287
Cp4.1LG01g00550	Cucurbita moschata (Rifu)	cmocpeB313
Cp4.1LG01g00550	Wild cucumber (PI 183967)	cpecpiB431
Cp4.1LG01g00550	Cucumber (Chinese Long) v2	cpecuB432
Cp4.1LG01g00550	Melon (DHL92) v3.5.1	cpemeB362
Cp4.1LG01g00550	Melon (DHL92) v3.5.1	cpemeB415
Cp4.1LG01g00550	Melon (DHL92) v3.6.1	cpemedB486