Carg13072 (gene) Silver-seed gourd

Overview
NameCarg13072
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionNAD(P)H-quinone oxidoreductase subunit S, chloroplastic
LocationCucurbita_argyrosperma_scaffold_101 : 141140 .. 141856 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCCTCCATCTCCCTCCCTTCTCCCCAATCTCCCCTTCTCAAATCCACCTTCCTCGGCCGAACTACCCGCCGCTTTCATCTCCACCGCCAATTTCCCCTTCCCCGTCGCGCATTACCGAGCCATCAGACTTTCCGGCCCTCCGCCGCCTTCGATTTGGCCCAGCTTCTCGGCGGAAGAGGTCTTTGCAATGGCGAGAAAGGTCTCAAAGAGGAACTGAAGCGAAACGTGGTGGAGGAAACAATCGGCGCCGAAATTCCGGAAACAACCGAGAAATTAGCCGTCGATAAGGTTCCGGAAGATGGATTCGACAAGGAATTGATGGGATTAACCGGCGGATTTCCTGGCGGAGAGAAAGGATTGCGGAAATTCATATCGGAAAATCCTCCTCCTCCGCCTCCGAAACCTTCCGCTTCAAAATCCATCGAAATCGGTGCGATTCCGAGTTCGCAAAAACCAAAACCACCGGATCTGCCGTTGTTGCTGCCCGGAATGATCGCGATTGTGAAGAATCCGAACAGTCCATATTATATGTACTGCGGAATTGTACAGAGAATCACAGACGGAAAGGCAGGAGTTCTTTTCGAAGGAGGAAATTGGGATCGATTGATTACGTTTCGGCTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAATCCAAGATCGGCTGTTCTTGAACCTCTTCTTCAAAAGGATTCCCAATAA

mRNA sequence

ATGGCGTCCTCCATCTCCCTCCCTTCTCCCCAATCTCCCCTTCTCAAATCCACCTTCCTCGGCCGAACTACCCGCCGCTTTCATCTCCACCGCCAATTTCCCCTTCCCCGTCGCGCATTACCGAGCCATCAGACTTTCCGGCCCTCCGCCGCCTTCGATTTGGCCCAGCTTCTCGGCGGAAGAGGTCTTTGCAATGGCGAGAAAGGTCTCAAAGAGGAACTGAAGCGAAACGTGGTGGAGGAAACAATCGGCGCCGAAATTCCGGAAACAACCGAGAAATTAGCCGTCGATAAGGTTCCGGAAGATGGATTCGACAAGGAATTGATGGGATTAACCGGCGGATTTCCTGGCGGAGAGAAAGGATTGCGGAAATTCATATCGGAAAATCCTCCTCCTCCGCCTCCGAAACCTTCCGCTTCAAAATCCATCGAAATCGGTGCGATTCCGAGTTCGCAAAAACCAAAACCACCGGATCTGCCGTTGTTGCTGCCCGGAATGATCGCGATTGTGAAGAATCCGAACAGTCCATATTATATGTACTGCGGAATTGTACAGAGAATCACAGACGGAAAGGCAGGAGTTCTTTTCGAAGGAGGAAATTGGGATCGATTGATTACGTTTCGGCTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAATCCAAGATCGGCTGTTCTTGAACCTCTTCTTCAAAAGGATTCCCAATAA

Coding sequence (CDS)

ATGGCGTCCTCCATCTCCCTCCCTTCTCCCCAATCTCCCCTTCTCAAATCCACCTTCCTCGGCCGAACTACCCGCCGCTTTCATCTCCACCGCCAATTTCCCCTTCCCCGTCGCGCATTACCGAGCCATCAGACTTTCCGGCCCTCCGCCGCCTTCGATTTGGCCCAGCTTCTCGGCGGAAGAGGTCTTTGCAATGGCGAGAAAGGTCTCAAAGAGGAACTGAAGCGAAACGTGGTGGAGGAAACAATCGGCGCCGAAATTCCGGAAACAACCGAGAAATTAGCCGTCGATAAGGTTCCGGAAGATGGATTCGACAAGGAATTGATGGGATTAACCGGCGGATTTCCTGGCGGAGAGAAAGGATTGCGGAAATTCATATCGGAAAATCCTCCTCCTCCGCCTCCGAAACCTTCCGCTTCAAAATCCATCGAAATCGGTGCGATTCCGAGTTCGCAAAAACCAAAACCACCGGATCTGCCGTTGTTGCTGCCCGGAATGATCGCGATTGTGAAGAATCCGAACAGTCCATATTATATGTACTGCGGAATTGTACAGAGAATCACAGACGGAAAGGCAGGAGTTCTTTTCGAAGGAGGAAATTGGGATCGATTGATTACGTTTCGGCTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAATCCAAGATCGGCTGTTCTTGAACCTCTTCTTCAAAAGGATTCCCAATAA

Protein sequence

MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHQTFRPSAAFDLAQLLGGRGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ
Homology
[Close]
BLAST of Carg13072 vs. NCBI nr
Match: XP_022982522.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita maxima])

HSP 1 Score: 444.1 bits (1141), Expect = 2.9e-121
Identity = 235/238 (98.74%), Postives = 236/238 (99.16%), Query Frame = 0 

Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHQTFRPSAAFDLAQLLGG 60
           MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRA PSH TFRPSAAFDLAQLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRASPSHHTFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120
           RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK
Sbjct: 61  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120

Query: 121 GLRKFISENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180
           GLRKFI+ENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY
Sbjct: 121 GLRKFITENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180

Query: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 239
           CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ
Sbjct: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238

[Close]
BLAST of Carg13072 vs. NCBI nr
Match: XP_022943253.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita moschata])

HSP 1 Score: 442.6 bits (1137), Expect = 8.6e-121
Identity = 235/238 (98.74%), Postives = 235/238 (98.74%), Query Frame = 0 

Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHQTFRPSAAFDLAQLLGG 60
           MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSH T RPSAAFDLAQLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHHTSRPSAAFDLAQLLGG 60

Query: 61  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120
           RGLCNGEKGL EELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK
Sbjct: 61  RGLCNGEKGLNEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120

Query: 121 GLRKFISENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180
           GLRKFISENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY
Sbjct: 121 GLRKFISENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180

Query: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 239
           CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ
Sbjct: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238

[Close]
BLAST of Carg13072 vs. NCBI nr
Match: XP_023553886.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 442.6 bits (1137), Expect = 8.6e-121
Identity = 234/238 (98.32%), Postives = 236/238 (99.16%), Query Frame = 0 

Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHQTFRPSAAFDLAQLLGG 60
           MASSISLPSPQSPLLKSTFLG+TTRRFHLHRQFPLPRRA PSH TFRPSA+FDLAQLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLPRRASPSHHTFRPSASFDLAQLLGG 60

Query: 61  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120
           RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK
Sbjct: 61  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGEK 120

Query: 121 GLRKFISENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180
           GLRKFISENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY
Sbjct: 121 GLRKFISENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYMY 180

Query: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 239
           CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ
Sbjct: 181 CGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238

[Close]
BLAST of Carg13072 vs. NCBI nr
Match: XP_004148998.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X1 [Cucumis sativus] >XP_011653218.1 PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X2 [Cucumis sativus] >XP_011653219.1 PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X3 [Cucumis sativus] >XP_011653220.1 PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X4 [Cucumis sativus])

HSP 1 Score: 366.7 bits (940), Expect = 6.0e-98
Identity = 189/242 (78.10%), Postives = 206/242 (85.12%), Query Frame = 0 

Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRALPSHQTFRPSAAFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL +  RR  LHR FPLP R A  +   FRPSAAFDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+GLKEELKRNV +  +   G+EIP T++KL VD VPEDGF+KELMGLTGGFP
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122

Query: 121 GGEKGLRKFISENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFISENP             EIG+I ++QKPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 123 GGEKGLKKFISENP--PPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 239
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEPLLQKD
Sbjct: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD 242

[Close]
BLAST of Carg13072 vs. NCBI nr
Match: XP_008451952.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucumis melo])

HSP 1 Score: 366.3 bits (939), Expect = 7.8e-98
Identity = 188/242 (77.69%), Postives = 205/242 (84.71%), Query Frame = 0 

Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRALPSHQTFRPSAAFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL +  RR  LHR FPLP R A  +H  FRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+G++EELKRNV +  +   G EIPET+ KL VD VPEDGF+KELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 121 GGEKGLRKFISENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFISENP             EIG+I +++KPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 121 GGEKGLKKFISENP--PPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 239
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEP LQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKD 240

[Close]
BLAST of Carg13072 vs. TAIR10
Match: AT4G23890.1 (unknown protein)

HSP 1 Score: 256.9 bits (655), Expect = 1.2e-68
Identity = 150/241 (62.24%), Postives = 190/241 (78.84%), Query Frame = 0 

Query: 3   SSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRALPSHQTFRPSAAFDLAQLLGGR 62
           SSI++P+ ++P+ +S FLG+T +   ++R  FP P++    +Q  +    F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGEKGLKEELKRNV--VEETIGAEIPETTEKLAVD-----KVPEDGFDKELMGLTGG 122
           GLCNGEKG+++EL+RN+   +ET  AE  E TE+ + D     KVPEDGF+KE+MGLTGG
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNE-TERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 123 FPGGEKGLRKFISENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPN 182
           FPGGEKGL+ FI +N XXXXXXXXXXXXX      + +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNXXXXXXXXXXXXXXXXXXXXTDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 183 SPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 236
           SPY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEPL++
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 242

[Close]
BLAST of Carg13072 vs. Swiss-Prot
Match: sp|Q9T0A4|NDHS_ARATH (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhS PE=1 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.2e-67
Identity = 150/241 (62.24%), Postives = 190/241 (78.84%), Query Frame = 0 

Query: 3   SSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRALPSHQTFRPSAAFDLAQLLGGR 62
           SSI++P+ ++P+ +S FLG+T +   ++R  FP P++    +Q  +    F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGEKGLKEELKRNV--VEETIGAEIPETTEKLAVD-----KVPEDGFDKELMGLTGG 122
           GLCNGEKG+++EL+RN+   +ET  AE  E TE+ + D     KVPEDGF+KE+MGLTGG
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNE-TERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 123 FPGGEKGLRKFISENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPN 182
           FPGGEKGL+ FI +N XXXXXXXXXXXXX      + +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNXXXXXXXXXXXXXXXXXXXXTDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 183 SPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 236
           SPY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEPL++
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 242

[Close]
BLAST of Carg13072 vs. TrEMBL
Match: tr|A0A1S3BSR5|A0A1S3BSR5_CUCME (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493099 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 5.2e-98
Identity = 188/242 (77.69%), Postives = 205/242 (84.71%), Query Frame = 0 

Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRALPSHQTFRPSAAFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL +  RR  LHR FPLP R A  +H  FRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+G++EELKRNV +  +   G EIPET+ KL VD VPEDGF+KELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 121 GGEKGLRKFISENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFISENP             EIG+I +++KPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 121 GGEKGLKKFISENP--PPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 239
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEP LQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKD 240

[Close]
BLAST of Carg13072 vs. TrEMBL
Match: tr|A0A0A0KV29|A0A0A0KV29_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052580 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 6.5e-93
Identity = 181/238 (76.05%), Postives = 199/238 (83.61%), Query Frame = 0 

Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRALPSHQTFRPSAAFDLAQLLG 60
           MASSISLPSPQ+PLLKS+FL +  RR  LHR FPLP R A  +   FRPSAAFDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120
           GRGLCNGE+GLKEELKRNV +  +   G+EIP T++KL VD VPEDGF+KELMGLTGGFP
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122

Query: 121 GGEKGLRKFISENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180
           GGEKGL+KFISENP             EIG+I ++QKPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 123 GGEKGLKKFISENP--PPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 235
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SA   PLL+
Sbjct: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 238

[Close]
BLAST of Carg13072 vs. TrEMBL
Match: tr|A0A061G593|A0A061G593_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_016470 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 5.8e-73
Identity = 149/239 (62.34%), Postives = 178/239 (74.48%), Query Frame = 0 

Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRALPSHQTFRPSAAFDLAQLLG 60
           MASSI+LPS Q  LL+S FLG+       H+  FP+ ++     +TF   A FDL ++LG
Sbjct: 1   MASSITLPSLQGSLLRSRFLGQNPISHRPHKSAFPVVKQP----KTF--CAKFDLFEILG 60

Query: 61  GRGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGE 120
           GRGLCNGEKGL+ ELKRNV+E +  A   E         VPED F+KELMGLTGGFPGGE
Sbjct: 61  GRGLCNGEKGLEVELKRNVLEASSPATKDEQRSGSTAISVPEDAFEKELMGLTGGFPGGE 120

Query: 121 KGLRKFISENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYM 180
           KGL+KF+ ENP              I  + +++KPKPP+LPLL+PGMIAIVKNPN+P+YM
Sbjct: 121 KGLKKFVEENP--PPAKQSVSDSVSIARLAATKKPKPPELPLLMPGMIAIVKNPNNPFYM 180

Query: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 239
           YCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNP+SAVLE +L+KD +
Sbjct: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPKSAVLEAMLEKDQK 231

[Close]
BLAST of Carg13072 vs. TrEMBL
Match: tr|A0A0F7GY74|A0A0F7GY74_9ROSI (Chlororespiratory reduction31 OS=Geranium incanum OX=1158081 GN=NDHS PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.9e-71
Identity = 148/246 (60.16%), Postives = 182/246 (73.98%), Query Frame = 0 

Query: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRALPSHQTFRPSAAFDLAQLLG 60
           MASS++LPS Q P LKS FLGR     +  +  F +P++   S+ T   SA F+L ++LG
Sbjct: 1   MASSMTLPSLQGPQLKSHFLGRKILPSNSQKPFFSVPKQRSRSYPT--ASAKFNLFEILG 60

Query: 61  GRGLCNGEKGLKEELKRNVVEE-TIGAEIPETTEKLAVD-------KVPEDGFDKELMGL 120
           GRGLCNGEKG++EELK+++ ++ T  + +  +TE +          KVPEDGFDKELMGL
Sbjct: 61  GRGLCNGEKGIEEELKKSIEDQKTESSSLSASTETVQSSGSQESGVKVPEDGFDKELMGL 120

Query: 121 TGGFPGGEKGLRKFISENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVK 180
           TGGFPGGE GLRKFI ENP             +  A+ SS+K K P+LPLL+PGMIAIVK
Sbjct: 121 TGGFPGGEAGLRKFIEENPPSPKKTAPAKGEDKTVALASSKKVKAPELPLLMPGMIAIVK 180

Query: 181 NPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEP 238
           NPN+P+YMYCGIVQRITDG+AGVLFEGGNWD+LITFRLEELERREKGPP KNP+S VLE 
Sbjct: 181 NPNNPFYMYCGIVQRITDGRAGVLFEGGNWDKLITFRLEELERREKGPPAKNPKSVVLEA 240

[Close]
BLAST of Carg13072 vs. TrEMBL
Match: tr|A0A0F7GZW0|A0A0F7GZW0_9ROSI (Chlororespiratory reduction31 OS=California macrophylla OX=337344 GN=NDHS PE=2 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 9.2e-71
Identity = 146/243 (60.08%), Postives = 177/243 (72.84%), Query Frame = 0 

Query: 2   ASSISLPSPQSPLLKSTFLGRTTRRFHLHRQ-FPLPRRALPSHQTFRPSAAFDLAQLLGG 61
           +SSI+LPS Q P LKS FLGR     + H+  F + ++   S+   + SA FDL Q+LGG
Sbjct: 3   SSSITLPSLQGPQLKSHFLGRKILPGNSHKLFFSVSKQRSTSYP--KASAKFDLFQILGG 62

Query: 62  RGLCNGEKGLKEELKRNVVEETIGAEIPETTEKLAVD-----KVPEDGFDKELMGLTGGF 121
           RGLCNGEKG++EELK+++ E          TE+ +       K PEDGFDKELMGLTGGF
Sbjct: 63  RGLCNGEKGIEEELKKSIEETAPSLSASAETEQSSGSEESSVKAPEDGFDKELMGLTGGF 122

Query: 122 PGGEKGLRKFISENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNS 181
           PGGE GLRKFI +NP             +  A+ +S+K K P+LPLL+PGMIAIVKNPN+
Sbjct: 123 PGGETGLRKFIEKNPPPPKKATPAKGEDKTVALATSKKMKAPELPLLMPGMIAIVKNPNN 182

Query: 182 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQK 239
           P+YMYCGIVQRITDG+AGVLFEGGNWD+LITFRLEELERREKGPP KNPRS VLE L++K
Sbjct: 183 PFYMYCGIVQRITDGRAGVLFEGGNWDKLITFRLEELERREKGPPAKNPRSVVLEALVEK 242

The following BLAST results are available for this feature:
BLAST of Carg13072 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022982522.12.9e-12198.74NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita maxima][more]
XP_022943253.18.6e-12198.74NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita moschata][more]
XP_023553886.18.6e-12198.32NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita pepo subsp. p... [more]
XP_004148998.16.0e-9878.10PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X1 [C... [more]
XP_008451952.17.8e-9877.69PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucumis melo... [more]
BLAST of Carg13072 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23890.11.2e-6862.24unknown protein[more]
BLAST of Carg13072 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9T0A4|NDHS_ARATH2.2e-6762.24NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana ... [more]
BLAST of Carg13072 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BSR5|A0A1S3BSR5_CUCME5.2e-9877.69NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucumis melo OX=3656 ... [more]
tr|A0A0A0KV29|A0A0A0KV29_CUCSA6.5e-9376.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052580 PE=4 SV=1[more]
tr|A0A061G593|A0A061G593_THECC5.8e-7362.34Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_016470 PE=4 ... [more]
tr|A0A0F7GY74|A0A0F7GY74_9ROSI1.9e-7160.16Chlororespiratory reduction31 OS=Geranium incanum OX=1158081 GN=NDHS PE=2 SV=1[more]
tr|A0A0F7GZW0|A0A0F7GZW0_9ROSI9.2e-7160.08Chlororespiratory reduction31 OS=California macrophylla OX=337344 GN=NDHS PE=2 S... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009767photosynthetic electron transport chain
Vocabulary: INTERPRO
TermDefinition
IPR021659NdhS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13072-RACarg13072-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021659NADH dehydrogenase-like complex, subunit SPFAMPF11623NdhScoord: 162..213
e-value: 1.2E-28
score: 98.5
IPR021659NADH dehydrogenase-like complex, subunit SPANTHERPTHR35494FAMILY NOT NAMEDcoord: 1..237
NoneNo IPR availableGENE3DG3DSA:2.30.30.140coord: 161..219
e-value: 3.4E-31
score: 108.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 213..238

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg13072Cla012805Watermelon (97103) v1carwmB0043
Carg13072Csa4G052580Cucumber (Chinese Long) v2carcuB0044
Carg13072MELO3C016296Melon (DHL92) v3.5.1carmeB0043
Carg13072ClCG07G011600Watermelon (Charleston Gray)carwcgB0049
Carg13072CSPI04G06400Wild cucumber (PI 183967)carcpiB0048
Carg13072Cucsa.114990Cucumber (Gy14) v1carcgyB0051
Carg13072CmaCh04G006860Cucurbita maxima (Rimu)carcmaB0055
Carg13072CmoCh04G007310Cucurbita moschata (Rifu)carcmoB0058
Carg13072Lsi07G007210Bottle gourd (USVL1VR-Ls)carlsiB040
Carg13072Cp4.1LG01g00550Cucurbita pepo (Zucchini)carcpeB0061
Carg13072CsGy4G006320Cucumber (Gy14) v2carcgybB0044
Carg13072MELO3C016296.2Melon (DHL92) v3.6.1carmedB0046
Carg13072CsaV3_4G006610Cucumber (Chinese Long) v3carcucB0049
Carg13072Cla97C07G138340Watermelon (97103) v2carwmbB0045
Carg13072Bhi01G002301Wax gourdcarwgoB0049
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg13072Silver-seed gourdcarcarB048
Carg13072Silver-seed gourdcarcarB049
Carg13072Cucumber (Gy14) v2carcgybB0048
Carg13072Cucumber (Gy14) v1carcgyB0056
Carg13072Cucurbita maxima (Rimu)carcmaB0051
Carg13072Cucurbita maxima (Rimu)carcmaB0054
Carg13072Cucurbita moschata (Rifu)carcmoB0053
Carg13072Cucurbita moschata (Rifu)carcmoB0056
Carg13072Cucurbita pepo (Zucchini)carcpeB0056
Carg13072Cucurbita pepo (Zucchini)carcpeB0058
Carg13072Wild cucumber (PI 183967)carcpiB0052
Carg13072Cucumber (Chinese Long) v2carcuB0048
Carg13072Cucumber (Chinese Long) v3carcucB0053
Carg13072Bottle gourd (USVL1VR-Ls)carlsiB038
Carg13072Melon (DHL92) v3.5.1carmeB0040
Carg13072Melon (DHL92) v3.5.1carmeB0045
Carg13072Melon (DHL92) v3.6.1carmedB0041
Carg13072Melon (DHL92) v3.6.1carmedB0044
Carg13072Watermelon (Charleston Gray)carwcgB0044
Carg13072Watermelon (97103) v1carwmB0049
Carg13072Watermelon (97103) v2carwmbB0041
Carg13072Wax gourdcarwgoB0048