CsGy4G006320 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G006320
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic
Location	Chr4 : 4571387 .. 4572115 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATGGCTTCCTCAATCTCCCTTCCATCTCCTCAAACTCCGCTTCTTAAATCCTCCTTTCTCCCACAAAACCGCCGCCGCCTCCTTCTCCACCGACCATTTCCCCTGCCCGGCCGTCACGCCTCATCAACCCAACACGCTTTCCGGCCCTCCGCCGCCTTCGATTTAGCCCAGCTTCTCGGCGGAAGAGGCCTCTGCAATGGCGAGCAAGGTCTAAAAGAGGAACTCAAGAGAAACGTCGACGACAATCCAGTCCTCGCAGATGGAAGCGAAATTCCAGGAACCTCCGATAAATTACCGGTTGATAGTGTTCCAGAAGATGGGTTCGAGAAGGAATTAATGGGCTTAACCGGTGGGTTTCCCGGCGGAGAGAAAGGATTAAAAAAATTCATATCGGAGAATCCTCCTCCTCGGAAACCCTCCGCTTCAAAATCCGGCGAAATCGGCTCGATTATAAATACACAGAAACCAAAGCCGCCGGATCTTCCACTGTTGCTACCGGGAATGATTGCGATTGTGAAGAATCCTAACAATCCGTACTACATGTATTGTGGAATCGTTCAAAGAATCACAGATGGAAAAGCTGGGGTTCTTTTTGAAGGAGGAAATTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTGGAACGAAGAGAAAAAGGACCGCCGATGAAGAACCCTAAATCGGCTGTTCTTGAACCGCTTCTTCAAAAGGATTCTCAATGA

mRNA sequence

ATGTCCATGGCTTCCTCAATCTCCCTTCCATCTCCTCAAACTCCGCTTCTTAAATCCTCCTTTCTCCCACAAAACCGCCGCCGCCTCCTTCTCCACCGACCATTTCCCCTGCCCGGCCGTCACGCCTCATCAACCCAACACGCTTTCCGGCCCTCCGCCGCCTTCGATTTAGCCCAGCTTCTCGGCGGAAGAGGCCTCTGCAATGGCGAGCAAGGTCTAAAAGAGGAACTCAAGAGAAACGTCGACGACAATCCAGTCCTCGCAGATGGAAGCGAAATTCCAGGAACCTCCGATAAATTACCGGTTGATAGTGTTCCAGAAGATGGGTTCGAGAAGGAATTAATGGGCTTAACCGGTGGGTTTCCCGGCGGAGAGAAAGGATTAAAAAAATTCATATCGGAGAATCCTCCTCCTCGGAAACCCTCCGCTTCAAAATCCGGCGAAATCGGCTCGATTATAAATACACAGAAACCAAAGCCGCCGGATCTTCCACTGTTGCTACCGGGAATGATTGCGATTGTGAAGAATCCTAACAATCCGTACTACATGTATTGTGGAATCGTTCAAAGAATCACAGATGGAAAAGCTGGGGTTCTTTTTGAAGGAGGAAATTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTGGAACGAAGAGAAAAAGGACCGCCGATGAAGAACCCTAAATCGGCTGTTCTTGAACCGCTTCTTCAAAAGGATTCTCAATGA

Coding sequence (CDS)

ATGTCCATGGCTTCCTCAATCTCCCTTCCATCTCCTCAAACTCCGCTTCTTAAATCCTCCTTTCTCCCACAAAACCGCCGCCGCCTCCTTCTCCACCGACCATTTCCCCTGCCCGGCCGTCACGCCTCATCAACCCAACACGCTTTCCGGCCCTCCGCCGCCTTCGATTTAGCCCAGCTTCTCGGCGGAAGAGGCCTCTGCAATGGCGAGCAAGGTCTAAAAGAGGAACTCAAGAGAAACGTCGACGACAATCCAGTCCTCGCAGATGGAAGCGAAATTCCAGGAACCTCCGATAAATTACCGGTTGATAGTGTTCCAGAAGATGGGTTCGAGAAGGAATTAATGGGCTTAACCGGTGGGTTTCCCGGCGGAGAGAAAGGATTAAAAAAATTCATATCGGAGAATCCTCCTCCTCGGAAACCCTCCGCTTCAAAATCCGGCGAAATCGGCTCGATTATAAATACACAGAAACCAAAGCCGCCGGATCTTCCACTGTTGCTACCGGGAATGATTGCGATTGTGAAGAATCCTAACAATCCGTACTACATGTATTGTGGAATCGTTCAAAGAATCACAGATGGAAAAGCTGGGGTTCTTTTTGAAGGAGGAAATTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTGGAACGAAGAGAAAAAGGACCGCCGATGAAGAACCCTAAATCGGCTGTTCTTGAACCGCTTCTTCAAAAGGATTCTCAATGA

Protein sequence

MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKDSQ

Homology

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BLAST of CsGy4G006320 vs. NCBI nr
Match: XP_004148998.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X1 [Cucumis sativus] >XP_011653218.1 PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X2 [Cucumis sativus] >XP_011653219.1 PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X3 [Cucumis sativus] >XP_011653220.1 PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X4 [Cucumis sativus])

HSP 1 Score: 488.4 bits (1256), Expect = 1.4e-134
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL 60
           MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL
Sbjct: 1   MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL 60

Query: 61  LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 120
           LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG
Sbjct: 61  LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 120

Query: 121 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 121 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD 240
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD 240

Query: 241 SQ 243
           SQ
Sbjct: 241 SQ 242

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BLAST of CsGy4G006320 vs. NCBI nr
Match: KGN53408.1 (hypothetical protein Csa_4G052580 [Cucumis sativus])

HSP 1 Score: 471.1 bits (1211), Expect = 2.3e-129
Identity = 234/238 (98.32%), Postives = 235/238 (98.74%), Query Frame = 0


Query: 1   MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL 60
           MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL
Sbjct: 1   MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL 60

Query: 61  LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 120
           LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG
Sbjct: 61  LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 120

Query: 121 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 121 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQ 239
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSA   PLL+
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 238

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BLAST of CsGy4G006320 vs. NCBI nr
Match: XP_008451952.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucumis melo])

HSP 1 Score: 466.8 bits (1200), Expect = 4.3e-128
Identity = 228/240 (95.00%), Postives = 236/240 (98.33%), Query Frame = 0


Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62
           MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASST HAFRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122
           GRGLCNGE+G++EELKRNVDDNPV+ADG+EIP TS KLPVDSVPEDGFEKELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 123 GGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNPYY 182
           GGEKGLKKFISENPPPRKPSASKSGEIGSI+NT+KPKPPDLPLLLPGMIAIVKNPNNPYY
Sbjct: 121 GGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYY 180

Query: 183 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKDSQ 242
           MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEP LQKDSQ
Sbjct: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKDSQ 240

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BLAST of CsGy4G006320 vs. NCBI nr
Match: XP_023553886.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 369.8 bits (948), Expect = 7.2e-99
Identity = 191/242 (78.93%), Postives = 208/242 (85.95%), Query Frame = 0


Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62
           MASSISLPSPQ+PLLKS+FL Q  RR  LHR FPLP R AS + H FRPSA+FDLAQLLG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLP-RRASPSHHTFRPSASFDLAQLLG 60

Query: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122
           GRGLCNGE+GLKEELKRNV +  +   G+EIP T++KL VD VPEDGF+KELMGLTGGFP
Sbjct: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120

Query: 123 GGEKGLKKFISENP--PPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182
           GGEKGL+KFISENP             EIG+I ++QKPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 121 GGEKGLRKFISENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180

Query: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD 242
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEPLLQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 238

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BLAST of CsGy4G006320 vs. NCBI nr
Match: XP_022982522.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita maxima])

HSP 1 Score: 368.2 bits (944), Expect = 2.1e-98
Identity = 190/242 (78.51%), Postives = 208/242 (85.95%), Query Frame = 0


Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62
           MASSISLPSPQ+PLLKS+FL +  RR  LHR FPLP R AS + H FRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRASPSHHTFRPSAAFDLAQLLG 60

Query: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122
           GRGLCNGE+GLKEELKRNV +  +   G+EIP T++KL VD VPEDGF+KELMGLTGGFP
Sbjct: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120

Query: 123 GGEKGLKKFISENP--PPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182
           GGEKGL+KFI+ENP             EIG+I ++QKPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 121 GGEKGLRKFITENPXXXXXXXXXXXXXEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180

Query: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD 242
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEPLLQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 238

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BLAST of CsGy4G006320 vs. TAIR10
Match: AT4G23890.1 (unknown protein)

HSP 1 Score: 247.7 bits (631), Expect = 7.5e-66
Identity = 134/241 (55.60%), Postives = 170/241 (70.54%), Query Frame = 0


Query: 5   SSISLPSPQTPLLKSSFLPQNRRRLLLHRP-FPLPGRHASSTQHAFRPSAAFDLAQLLGG 64
           SSI++P+ +TP+ +S FL Q  +   ++R  FP P +   S  +  +    F+L +++GG
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQ--QSKLYQVKAMGKFNLWEVMGG 63

Query: 65  RGLCNGEQGLKEELKRNVDDNPVL--ADGSEIPGTSDKLPVD-SVPEDGFEKELMGLTGG 124
           RGLCNGE+G+++EL+RN++D      A+ +E    SD   +   VPEDGFEKE+MGLTGG
Sbjct: 64  RGLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 125 FPGGEKGLKKFISEN--PPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPN 184
           FPGGEKGLK FI +N                      +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNXXXXXXXXXXXXXXXXXXXXTDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 185 NPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQ 240
           +PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNPKS +LEPL++
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 242

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BLAST of CsGy4G006320 vs. Swiss-Prot
Match: sp|Q9T0A4|NDHS_ARATH (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhS PE=1 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.3e-64
Identity = 134/241 (55.60%), Postives = 170/241 (70.54%), Query Frame = 0


Query: 5   SSISLPSPQTPLLKSSFLPQNRRRLLLHRP-FPLPGRHASSTQHAFRPSAAFDLAQLLGG 64
           SSI++P+ +TP+ +S FL Q  +   ++R  FP P +   S  +  +    F+L +++GG
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQ--QSKLYQVKAMGKFNLWEVMGG 63

Query: 65  RGLCNGEQGLKEELKRNVDDNPVL--ADGSEIPGTSDKLPVD-SVPEDGFEKELMGLTGG 124
           RGLCNGE+G+++EL+RN++D      A+ +E    SD   +   VPEDGFEKE+MGLTGG
Sbjct: 64  RGLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 125 FPGGEKGLKKFISEN--PPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPN 184
           FPGGEKGLK FI +N                      +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNXXXXXXXXXXXXXXXXXXXXTDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 185 NPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQ 240
           +PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNPKS +LEPL++
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 242

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BLAST of CsGy4G006320 vs. TrEMBL
Match: tr|A0A0A0KV29|A0A0A0KV29_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052580 PE=4 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 1.5e-129
Identity = 234/238 (98.32%), Postives = 235/238 (98.74%), Query Frame = 0


Query: 1   MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL 60
           MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL
Sbjct: 1   MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL 60

Query: 61  LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 120
           LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG
Sbjct: 61  LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 120

Query: 121 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 121 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQ 239
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSA   PLL+
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 238

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BLAST of CsGy4G006320 vs. TrEMBL
Match: tr|A0A1S3BSR5|A0A1S3BSR5_CUCME (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493099 PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 2.9e-128
Identity = 228/240 (95.00%), Postives = 236/240 (98.33%), Query Frame = 0


Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62
           MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASST HAFRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122
           GRGLCNGE+G++EELKRNVDDNPV+ADG+EIP TS KLPVDSVPEDGFEKELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 123 GGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNPYY 182
           GGEKGLKKFISENPPPRKPSASKSGEIGSI+NT+KPKPPDLPLLLPGMIAIVKNPNNPYY
Sbjct: 121 GGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYY 180

Query: 183 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKDSQ 242
           MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEP LQKDSQ
Sbjct: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKDSQ 240

[Close]

BLAST of CsGy4G006320 vs. TrEMBL
Match: tr|A0A1R3IB15|A0A1R3IB15_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13439 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 7.9e-78
Identity = 160/242 (66.12%), Postives = 186/242 (76.86%), Query Frame = 0


Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGR-HASSTQHAFRPS----AAFDL 62
           MASSI++P+ Q  LL+S FL QN          P+  R H SS   A +PS    A FDL
Sbjct: 1   MASSITIPTLQGSLLRSQFLGQN----------PISSRPHKSSFPVAKQPSQTVYAKFDL 60

Query: 63  AQLLGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGT-SDKLPVDSVPEDGFEKELMG 122
            +LLGGRGLCNGE+G++ ELKR V++   L+  ++  G+ S  +P   VPED FEKE+MG
Sbjct: 61  FELLGGRGLCNGEKGVEVELKRKVEETSSLSSTADDEGSGSTAIP---VPEDAFEKEMMG 120

Query: 123 LTGGFPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKN 182
           LTGGFPGGEKGLKKFI ENPPP K S S SG I S+  T+KPKPP+LPLL+PGMIAIVKN
Sbjct: 121 LTGGFPGGEKGLKKFIEENPPPPKQSVSDSGSIASLATTKKPKPPELPLLMPGMIAIVKN 180

Query: 183 PNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPL 239
           PNNP+YMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNPKS VLE +
Sbjct: 181 PNNPFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPKSVVLEAI 229

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BLAST of CsGy4G006320 vs. TrEMBL
Match: tr|A0A061G593|A0A061G593_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_016470 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 1.8e-77
Identity = 162/243 (66.67%), Postives = 183/243 (75.31%), Query Frame = 0


Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPS---AAFDLAQ 62
           MASSI+LPS Q  LL+S FL QN    + HRP      H S+     +P    A FDL +
Sbjct: 1   MASSITLPSLQGSLLRSRFLGQNP---ISHRP------HKSAFPVVKQPKTFCAKFDLFE 60

Query: 63  LLGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTG 122
           +LGGRGLCNGE+GL+ ELKRNV +    A   E    S  +   SVPED FEKELMGLTG
Sbjct: 61  ILGGRGLCNGEKGLEVELKRNVLEASSPATKDEQRSGSTAI---SVPEDAFEKELMGLTG 120

Query: 123 GFPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNN 182
           GFPGGEKGLKKF+ ENPPP K S S S  I  +  T+KPKPP+LPLL+PGMIAIVKNPNN
Sbjct: 121 GFPGGEKGLKKFVEENPPPAKQSVSDSVSIARLAATKKPKPPELPLLMPGMIAIVKNPNN 180

Query: 183 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQK 242
           P+YMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNPKSAVLE +L+K
Sbjct: 181 PFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPKSAVLEAMLEK 231

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BLAST of CsGy4G006320 vs. TrEMBL
Match: tr|A0A067GD15|A0A067GD15_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044915mg PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.1e-75
Identity = 148/239 (61.92%), Postives = 185/239 (77.41%), Query Frame = 0


Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62
           MASSI+L + Q PLL+S FL QN+      +P+    +  S+     +P A FDL +++G
Sbjct: 1   MASSINLHTLQGPLLQSHFLGQNQVSYRPKKPYLATPKQPST---VLKPCAKFDLFEIMG 60

Query: 63  GRGLCNGEQGLKEELKRNV-DDNPVLADGSEIPGTSDKLPVD-SVPEDGFEKELMGLTGG 122
           GRGLCNGE+G++ ELKRNV +    +AD  E    S  +P   SVPED FEKE+MGLTGG
Sbjct: 61  GRGLCNGEKGIELELKRNVTEQESQVADKEEESSASTAMPSTLSVPEDAFEKEMMGLTGG 120

Query: 123 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182
           FPGGEKGL++FI +NPPP+KP  + SG++ ++  T+KPKPP+ PLL+PGM AIVKNPNNP
Sbjct: 121 FPGGEKGLQQFIEQNPPPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNP 180

Query: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQK 240
           +YMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPP +NPKSAVLE +++K
Sbjct: 181 FYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLEGMIKK 236

The following BLAST results are available for this feature:

BLAST of CsGy4G006320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148998.1	1.4e-134	100.00	PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X1 [C...	[more]
KGN53408.1	2.3e-129	98.32	hypothetical protein Csa_4G052580 [Cucumis sativus]	[more]
XP_008451952.1	4.3e-128	95.00	PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucumis melo...	[more]
XP_023553886.1	7.2e-99	78.93	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita pepo subsp. p...	[more]
XP_022982522.1	2.1e-98	78.51	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita maxima]	[more]

BLAST of CsGy4G006320 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23890.1	7.5e-66	55.60	unknown protein	[more]

BLAST of CsGy4G006320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9T0A4\|NDHS_ARATH	1.3e-64	55.60	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of CsGy4G006320 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KV29\|A0A0A0KV29_CUCSA	1.5e-129	98.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052580 PE=4 SV=1	[more]
tr\|A0A1S3BSR5\|A0A1S3BSR5_CUCME	2.9e-128	95.00	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
tr\|A0A1R3IB15\|A0A1R3IB15_COCAP	7.9e-78	66.12	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13439 PE=4 ...	[more]
tr\|A0A061G593\|A0A061G593_THECC	1.8e-77	66.67	Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_016470 PE=4 ...	[more]
tr\|A0A067GD15\|A0A067GD15_CITSI	2.1e-75	61.92	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044915mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009767	photosynthetic electron transport chain

Vocabulary: **INTERPRO**
Term	Definition
IPR021659	NdhS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G006320.1	CsGy4G006320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.30.30.140		coord: 165..223 e-value: 1.8E-31 score: 109.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 218..242
IPR021659	NADH dehydrogenase-like complex, subunit S	PFAM	PF11623	NdhS	coord: 166..217 e-value: 1.0E-28 score: 98.7
IPR021659	NADH dehydrogenase-like complex, subunit S	PANTHER	PTHR35494	FAMILY NOT NAMED	coord: 3..241

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G006320	Cla012805	Watermelon (97103) v1	cgybwmB283
CsGy4G006320	Csa4G052580	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G006320	MELO3C016296	Melon (DHL92) v3.5.1	cgybmeB256
CsGy4G006320	ClCG07G011600	Watermelon (Charleston Gray)	cgybwcgB302
CsGy4G006320	CSPI04G06400	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G006320	CmaCh04G006860	Cucurbita maxima (Rimu)	cgybcmaB547
CsGy4G006320	CmoCh04G007310	Cucurbita moschata (Rifu)	cgybcmoB521
CsGy4G006320	Lsi07G007210	Bottle gourd (USVL1VR-Ls)	cgyblsiB278
CsGy4G006320	Cp4.1LG01g00550	Cucurbita pepo (Zucchini)	cgybcpeB508
CsGy4G006320	MELO3C016296.2	Melon (DHL92) v3.6.1	cgybmedB253
CsGy4G006320	CsaV3_4G006610	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G006320	Cla97C07G138340	Watermelon (97103) v2	cgybwmbB304
CsGy4G006320	Bhi01G002301	Wax gourd	cgybwgoB352
CsGy4G006320	Carg13072	Silver-seed gourd	carcgybB0044

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G006320	Cucumber (Gy14) v2	cgybcgybB084
CsGy4G006320	Cucumber (Gy14) v2	cgybcgybB127
CsGy4G006320	Cucurbita maxima (Rimu)	cgybcmaB491
CsGy4G006320	Cucurbita maxima (Rimu)	cgybcmaB498
CsGy4G006320	Cucurbita moschata (Rifu)	cgybcmoB460
CsGy4G006320	Cucurbita moschata (Rifu)	cgybcmoB467
CsGy4G006320	Cucurbita pepo (Zucchini)	cgybcpeB487
CsGy4G006320	Cucumber (Chinese Long) v2	cgybcuB163
CsGy4G006320	Cucumber (Chinese Long) v2	cgybcuB182
CsGy4G006320	Bottle gourd (USVL1VR-Ls)	cgyblsiB231
CsGy4G006320	Bottle gourd (USVL1VR-Ls)	cgyblsiB274
CsGy4G006320	Melon (DHL92) v3.5.1	cgybmeB228
CsGy4G006320	Melon (DHL92) v3.5.1	cgybmeB269
CsGy4G006320	Melon (DHL92) v3.6.1	cgybmedB229
CsGy4G006320	Melon (DHL92) v3.6.1	cgybmedB250
CsGy4G006320	Melon (DHL92) v3.6.1	cgybmedB266
CsGy4G006320	Watermelon (Charleston Gray)	cgybwcgB267
CsGy4G006320	Watermelon (97103) v1	cgybwmB304
CsGy4G006320	Watermelon (97103) v1	cgybwmB300
CsGy4G006320	Wild cucumber (PI 183967)	cgybcpiB166
CsGy4G006320	Wild cucumber (PI 183967)	cgybcpiB185
CsGy4G006320	Silver-seed gourd	carcgybB0369
CsGy4G006320	Silver-seed gourd	carcgybB0589
CsGy4G006320	Cucumber (Chinese Long) v3	cgybcucB170
CsGy4G006320	Cucumber (Chinese Long) v3	cgybcucB185
CsGy4G006320	Watermelon (97103) v2	cgybwmbB256
CsGy4G006320	Watermelon (97103) v2	cgybwmbB294