Lsi07G007210.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G007210.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	NDH subunit NdhS
Location	chr07 : 7802123 .. 7802848 (-)
Sequence length	726

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCCATCTCCCTTCCAACTCCCCAATCTCCGCTTCTCAAATCCACTTTCCTCGGCCAAAACCGCCACCGCTTCCTTCTTCACCGCCCATTCCCCTTTCCCCGCCGCGCATCACCAAACCATCACGCTTTCCGGCCCTCCGCCGCCTTTGATTTGGCCCAGCTTCTAGGCGGAAGAGGCCTCTGCAATGGCGAGCGAGGTTTGAAAGAGGAACTCAAGAGAAACGTCCAGGAGATTCCCGCAGAAATCGACGCCGATGGAGGTGAAATTCCAGAAACCTCCGAGAAATTAGCCGTCGATAAGGTTCCGGAAGATGGATTCGAGAAGGAATTGATGGGGTTAACCGGTGGATTTCCTGGCGGAGAGAAGGGATTGAAAAAATTCATATCAGAAAATCCTCCTCCTCCGAAGCCTTCCGCTTCAAATCCCGGCGAAACCAGTGCGATTCTGAGTTCGCAGAAACCAAAGCCGCCGGATCTGCCGCTGTTGCTGCCGGGAATGATCGCAATCGTGAAGAATCCGAACAATCCGTACTACATGTATTGTGGAATCGTTCAGAGAATCACAGATGGAAAGGCTGGGGTTCTTTTTGAAGGAGGAAACTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAACCCTAGATCGGCTGTTCTTGAACCGCTTCTTCAAAATGATTCCCAATGA

mRNA sequence

ATGGCTTCCTCCATCTCCCTTCCAACTCCCCAATCTCCGCTTCTCAAATCCACTTTCCTCGGCCAAAACCGCCACCGCTTCCTTCTTCACCGCCCATTCCCCTTTCCCCGCCGCGCATCACCAAACCATCACGCTTTCCGGCCCTCCGCCGCCTTTGATTTGGCCCAGCTTCTAGGCGGAAGAGGCCTCTGCAATGGCGAGCGAGGTTTGAAAGAGGAACTCAAGAGAAACGTCCAGGAGATTCCCGCAGAAATCGACGCCGATGGAGGTGAAATTCCAGAAACCTCCGAGAAATTAGCCGTCGATAAGGTTCCGGAAGATGGATTCGAGAAGGAATTGATGGGGTTAACCGGTGGATTTCCTGGCGGAGAGAAGGGATTGAAAAAATTCATATCAGAAAATCCTCCTCCTCCGAAGCCTTCCGCTTCAAATCCCGGCGAAACCAGTGCGATTCTGAGTTCGCAGAAACCAAAGCCGCCGGATCTGCCGCTGTTGCTGCCGGGAATGATCGCAATCGTGAAGAATCCGAACAATCCGTACTACATGTATTGTGGAATCGTTCAGAGAATCACAGATGGAAAGGCTGGGGTTCTTTTTGAAGGAGGAAACTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAACCCTAGATCGGCTGTTCTTGAACCGCTTCTTCAAAATGATTCCCAATGA

Coding sequence (CDS)

ATGGCTTCCTCCATCTCCCTTCCAACTCCCCAATCTCCGCTTCTCAAATCCACTTTCCTCGGCCAAAACCGCCACCGCTTCCTTCTTCACCGCCCATTCCCCTTTCCCCGCCGCGCATCACCAAACCATCACGCTTTCCGGCCCTCCGCCGCCTTTGATTTGGCCCAGCTTCTAGGCGGAAGAGGCCTCTGCAATGGCGAGCGAGGTTTGAAAGAGGAACTCAAGAGAAACGTCCAGGAGATTCCCGCAGAAATCGACGCCGATGGAGGTGAAATTCCAGAAACCTCCGAGAAATTAGCCGTCGATAAGGTTCCGGAAGATGGATTCGAGAAGGAATTGATGGGGTTAACCGGTGGATTTCCTGGCGGAGAGAAGGGATTGAAAAAATTCATATCAGAAAATCCTCCTCCTCCGAAGCCTTCCGCTTCAAATCCCGGCGAAACCAGTGCGATTCTGAGTTCGCAGAAACCAAAGCCGCCGGATCTGCCGCTGTTGCTGCCGGGAATGATCGCAATCGTGAAGAATCCGAACAATCCGTACTACATGTATTGTGGAATCGTTCAGAGAATCACAGATGGAAAGGCTGGGGTTCTTTTTGAAGGAGGAAACTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTTGAACGAAGAGAAAAAGGACCTCCGATGAAGAACCCTAGATCGGCTGTTCTTGAACCGCTTCTTCAAAATGATTCCCAATGA

Protein sequence

MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFPFPRRASPNHHAFRPSAAFDLAQLLGGRGLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVDKVPEDGFEKELMGLTGGFPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQNDSQ

Homology

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BLAST of Lsi07G007210.1 vs. Swiss-Prot
Match: NDHS_ARATH (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana GN=ndhS PE=1 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.6e-73
Identity = 141/239 (59.00%), Postives = 181/239 (75.73%), Query Frame = 1


Query: 3   SSISLPTPQSPLLKSTFLGQNRHRFLLHRP-FPFPRRASPNHHAFRPSAAFDLAQLLGGR 62
           SSI++PT ++P+ +S FLGQ      ++R  FP P++ S  +   +    F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVD-KVPEDGFEKELMGLTGGF 122
           GLCNGE+G+++EL+RN+++      A+  E    S+   +  KVPEDGFEKE+MGLTGGF
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGGF 123

Query: 123 PGGEKGLKKFISENPPPPKPS--ASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNN 182
           PGGEKGLK FI +NPPPP P   A    + SA+ + +KPK P LPLL+PGMIAIVKN N+
Sbjct: 124 PGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQNS 183

Query: 183 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 238
           PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEPL++
Sbjct: 184 PYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 241

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BLAST of Lsi07G007210.1 vs. TrEMBL
Match: A0A0A0KV29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052580 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 2.2e-106
Identity = 199/238 (83.61%), Postives = 212/238 (89.08%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFPFP-RRASPNHHAFRPSAAFDLAQLLG 60
           MASSISLP+PQ+PLLKS+FL QNR R LLHRPFP P R AS   HAFRPSAAFDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVDKVPEDGFEKELMGLTGG 120
           GRGLCNGE+GLKEELKRNV + P  + ADG EIP TS+KL VD VPEDGFEKELMGLTGG
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNP--VLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 122

Query: 121 FPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGLKKFISENPPP KPSAS  GE  +I+++QKPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 123 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 238
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SA   PLL+
Sbjct: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 238

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BLAST of Lsi07G007210.1 vs. TrEMBL
Match: M5WAD8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010487mg PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.5e-78
Identity = 157/249 (63.05%), Postives = 189/249 (75.90%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFPFPRRASPNHHAFRPSAAFDLAQLLGG 60
           MAS+I+LP+ Q PLLKS FLG+N      H+   F     P+ H+ RP A F+L+++LGG
Sbjct: 1   MASNITLPSFQGPLLKSNFLGRNDLSNRAHKS-SFTIHKQPSIHSLRPCAKFNLSEILGG 60

Query: 61  RGLCNGERGLKEELKRNVQE-------IPAEIDADGGEIP-ETSEKLAVDKVPEDGFEKE 120
           RGLCNGE GL +EL RNV+E       + A + A+  E   ++S   A+  V ED FEKE
Sbjct: 61  RGLCNGEEGLLQELTRNVEEQKDVEEQVSAAVAAETDEEKSDSSSASALKSVQEDAFEKE 120

Query: 121 LMGLTGGFPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAI 180
           LMGLTGGFPGGEKGL+KFI +NPPP KP  ++ G T+A++SS+KPK P+LPLLLPGMIAI
Sbjct: 121 LMGLTGGFPGGEKGLQKFIEKNPPPKKPLVADSGSTAALVSSKKPKAPELPLLLPGMIAI 180

Query: 181 VKNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVL 240
           V NPN+PYY YCGIVQRITDGKAGVLFEGGNWDRLITFRL EL RR+KGPP KNP+SAVL
Sbjct: 181 VNNPNSPYYKYCGIVQRITDGKAGVLFEGGNWDRLITFRLGELLRRDKGPPGKNPKSAVL 240

Query: 241 EPLLQNDSQ 242
           EP LQ DS+
Sbjct: 241 EPFLQKDSE 248

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BLAST of Lsi07G007210.1 vs. TrEMBL
Match: A0A061G593_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_016470 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 1.0e-76
Identity = 157/243 (64.61%), Postives = 183/243 (75.31%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFP--FPRRASPNHHAFRPSAAFDLAQLL 60
           MASSI+LP+ Q  LL+S FLGQN    + HRP    FP    P        A FDL ++L
Sbjct: 1   MASSITLPSLQGSLLRSRFLGQNP---ISHRPHKSAFPVVKQPKTFC----AKFDLFEIL 60

Query: 61  GGRGLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVDKVPEDGFEKELMGLTG 120
           GGRGLCNGE+GL+ ELKRNV E  +    D     + S   A+  VPED FEKELMGLTG
Sbjct: 61  GGRGLCNGEKGLEVELKRNVLEASSPATKD----EQRSGSTAI-SVPEDAFEKELMGLTG 120

Query: 121 GFPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNN 180
           GFPGGEKGLKKF+ ENPPP K S S+    + + +++KPKPP+LPLL+PGMIAIVKNPNN
Sbjct: 121 GFPGGEKGLKKFVEENPPPAKQSVSDSVSIARLAATKKPKPPELPLLMPGMIAIVKNPNN 180

Query: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQN 240
           P+YMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNP+SAVLE +L+ 
Sbjct: 181 PFYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPKSAVLEAMLEK 231

Query: 241 DSQ 242
           D +
Sbjct: 241 DQK 231

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BLAST of Lsi07G007210.1 vs. TrEMBL
Match: A0A067GD15_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044915mg PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 7.5e-75
Identity = 144/238 (60.50%), Postives = 185/238 (77.73%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPF-PFPRRASPNHHAFRPSAAFDLAQLLG 60
           MASSI+L T Q PLL+S FLGQN+  +   +P+   P++ S      +P A FDL +++G
Sbjct: 1   MASSINLHTLQGPLLQSHFLGQNQVSYRPKKPYLATPKQPST---VLKPCAKFDLFEIMG 60

Query: 61  GRGLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVDKVPEDGFEKELMGLTGG 120
           GRGLCNGE+G++ ELKRNV E  +++     E   ++   +   VPED FEKE+MGLTGG
Sbjct: 61  GRGLCNGEKGIELELKRNVTEQESQVADKEEESSASTAMPSTLSVPEDAFEKEMMGLTGG 120

Query: 121 FPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGL++FI +NPPP KP  ++ G+  A+ +++KPKPP+ PLL+PGM AIVKNPNNP
Sbjct: 121 FPGGEKGLQQFIEQNPPPKKPVTADSGDVVALTTTRKPKPPEWPLLMPGMFAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 238
           +YMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPP +NP+SAVLE +++
Sbjct: 181 FYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPGRNPKSAVLEGMIK 235

[Close]

BLAST of Lsi07G007210.1 vs. TrEMBL
Match: A0A0F7CYV7_9ROSI (Chlororespiratory reduction31 OS=Pelargonium tetragonum GN=NDHS PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.2e-74
Identity = 150/244 (61.48%), Postives = 186/244 (76.23%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFPFPRRASPNHHAFRPSAAFDLAQLLGG 60
           MASSI+LPT Q P LKS F G+   + L      FP++ S +    + SA F+L ++LGG
Sbjct: 1   MASSITLPTLQGPQLKSQFFGR---KILPTTSLKFPKQRSTDFP--KTSAKFNLFEILGG 60

Query: 61  RGLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSE---KLAVDKVPEDGFEKELMGLT 120
           RGLCNGE G++EELK++++   A   A   E  ++     K ++  VP +GF+KELMGLT
Sbjct: 61  RGLCNGEEGIQEELKKSIENQTASPPAAATETEQSENSDSKNSIGNVPGEGFDKELMGLT 120

Query: 121 GGFPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPN 180
           GGFPGGE GL+KFI ENPPPPK SA+   +T ++ +S+K K P+LPLL+PGMIAIVKNPN
Sbjct: 121 GGFPGGETGLRKFIEENPPPPKSSAA-ANKTVSLATSKKAKAPELPLLMPGMIAIVKNPN 180

Query: 181 NPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 240
           NP+YMYCGIVQRITDG+AGVLFEGGNWDRL+TFRLEELERREKGPP KNP+SAVLE LL+
Sbjct: 181 NPFYMYCGIVQRITDGRAGVLFEGGNWDRLVTFRLEELERREKGPPAKNPKSAVLEALLE 238

Query: 241 NDSQ 242
            DSQ
Sbjct: 241 KDSQ 238

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BLAST of Lsi07G007210.1 vs. TAIR10
Match: AT4G23890.1 (AT4G23890.1 unknown protein)

HSP 1 Score: 277.3 bits (708), Expect = 8.8e-75
Identity = 141/239 (59.00%), Postives = 181/239 (75.73%), Query Frame = 1


Query: 3   SSISLPTPQSPLLKSTFLGQNRHRFLLHRP-FPFPRRASPNHHAFRPSAAFDLAQLLGGR 62
           SSI++PT ++P+ +S FLGQ      ++R  FP P++ S  +   +    F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVD-KVPEDGFEKELMGLTGGF 122
           GLCNGE+G+++EL+RN+++      A+  E    S+   +  KVPEDGFEKE+MGLTGGF
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGGF 123

Query: 123 PGGEKGLKKFISENPPPPKPS--ASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNN 182
           PGGEKGLK FI +NPPPP P   A    + SA+ + +KPK P LPLL+PGMIAIVKN N+
Sbjct: 124 PGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQNS 183

Query: 183 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 238
           PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEPL++
Sbjct: 184 PYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 241

[Close]

BLAST of Lsi07G007210.1 vs. NCBI nr
Match: gi|659102099|ref|XP_008451952.1| (PREDICTED: uncharacterized protein LOC103493099 [Cucumis melo])

HSP 1 Score: 412.1 bits (1058), Expect = 6.5e-112
Identity = 207/242 (85.54%), Postives = 218/242 (90.08%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFPFP-RRASPNHHAFRPSAAFDLAQLLG 60
           MASSISLP+PQ+PLLKS+FL QNR R LLHRPFP P R AS  HHAFRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVDKVPEDGFEKELMGLTGG 120
           GRGLCNGERG++EELKRNV + P  + ADG EIPETS KL VD VPEDGFEKELMGLTGG
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNP--VIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGG 120

Query: 121 FPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGLKKFISENPPP KPSAS  GE  +IL+++KPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 121 FPGGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQND 240
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEP LQ D
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKD 240

Query: 241 SQ 242
           SQ
Sbjct: 241 SQ 240

[Close]

BLAST of Lsi07G007210.1 vs. NCBI nr
Match: gi|449462539|ref|XP_004148998.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 409.1 bits (1050), Expect = 5.5e-111
Identity = 206/242 (85.12%), Postives = 218/242 (90.08%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFPFP-RRASPNHHAFRPSAAFDLAQLLG 60
           MASSISLP+PQ+PLLKS+FL QNR R LLHRPFP P R AS   HAFRPSAAFDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVDKVPEDGFEKELMGLTGG 120
           GRGLCNGE+GLKEELKRNV + P  + ADG EIP TS+KL VD VPEDGFEKELMGLTGG
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNP--VLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 122

Query: 121 FPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGLKKFISENPPP KPSAS  GE  +I+++QKPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 123 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQND 240
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEPLLQ D
Sbjct: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD 242

Query: 241 SQ 242
           SQ
Sbjct: 243 SQ 242

[Close]

BLAST of Lsi07G007210.1 vs. NCBI nr
Match: gi|700198250|gb|KGN53408.1| (hypothetical protein Csa_4G052580 [Cucumis sativus])

HSP 1 Score: 393.3 bits (1009), Expect = 3.1e-106
Identity = 199/238 (83.61%), Postives = 212/238 (89.08%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFPFP-RRASPNHHAFRPSAAFDLAQLLG 60
           MASSISLP+PQ+PLLKS+FL QNR R LLHRPFP P R AS   HAFRPSAAFDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGERGLKEELKRNVQEIPAEIDADGGEIPETSEKLAVDKVPEDGFEKELMGLTGG 120
           GRGLCNGE+GLKEELKRNV + P  + ADG EIP TS+KL VD VPEDGFEKELMGLTGG
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNP--VLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 122

Query: 121 FPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGLKKFISENPPP KPSAS  GE  +I+++QKPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 123 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 238
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SA   PLL+
Sbjct: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 238

[Close]

BLAST of Lsi07G007210.1 vs. NCBI nr
Match: gi|764581342|ref|XP_011463986.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 312.0 bits (798), Expect = 9.1e-82
Identity = 165/248 (66.53%), Postives = 193/248 (77.82%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRP-FPFPRRASPNHHAFRPSAAFDLAQLLG 60
           MAS+ISLP+ Q+PLLKS FLG+N H  L  +P F   RR SP+H   R  A F+L ++LG
Sbjct: 45  MASNISLPSFQNPLLKSNFLGRNDHSNLAPKPCFTVQRRPSPHH--LRTYAKFNLFEILG 104

Query: 61  GRGLCNGERGLKEELKRNVQE-IPAEID-----ADGGEIPETSEKLAVDKVPEDGFEKEL 120
           GRGL NGERG+++EL RNV+E  PA +      A+G E  E S   A+D   E  FEKEL
Sbjct: 105 GRGLLNGERGVEKELTRNVEEQAPAAVGDETEKAEGEEQSEGSAIAAIDSAQEAAFEKEL 164

Query: 121 MGLTGGFPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIAIV 180
           MGLTGGFPGGE GL+KFI +NPPP KP A+  G T+ ++SS+KPK P+LP+LLPGMIAIV
Sbjct: 165 MGLTGGFPGGETGLRKFIEKNPPPKKPPAAESGATAVLVSSKKPKAPELPILLPGMIAIV 224

Query: 181 KNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLE 240
            NPNNPY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEEL RREKGPP KNPRSA+LE
Sbjct: 225 SNPNNPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELTRREKGPPGKNPRSAILE 284

Query: 241 PLLQNDSQ 242
           PLLQ DS+
Sbjct: 285 PLLQKDSE 290

[Close]

BLAST of Lsi07G007210.1 vs. NCBI nr
Match: gi|694354985|ref|XP_009358605.1| (PREDICTED: uncharacterized protein LOC103949228 [Pyrus x bretschneideri])

HSP 1 Score: 302.4 bits (773), Expect = 7.2e-79
Identity = 158/249 (63.45%), Postives = 188/249 (75.50%), Query Frame = 1


Query: 1   MASSISLPTPQSPLLKSTFLGQNRHRFLLHRPFPFPRRASPNHHAFRPSAAFDLAQLLGG 60
           MASSI+LP+ Q PLLKS FLG+N      H+   F     P+ H+ RPSA F+L+++LGG
Sbjct: 1   MASSITLPSLQGPLLKSNFLGRNDLSNRAHKS-SFAVHKQPSTHSLRPSAKFNLSEILGG 60

Query: 61  RGLCNGERGLKEELKRNVQEIP----AEIDADGG-----EIPETSEKLAVDKVPEDGFEK 120
           RGLCNGE GL +EL RNV+E       ++ A        E P+ S   A++ V EDGF+K
Sbjct: 61  RGLCNGEAGLLQELTRNVEEQKNVEEEQVSAAAAAKTEEEKPDGSATAAIESVEEDGFDK 120

Query: 121 ELMGLTGGFPGGEKGLKKFISENPPPPKPSASNPGETSAILSSQKPKPPDLPLLLPGMIA 180
           ELMGLTGGFPGGEKGL+KFI +NPPP K S +  G T+A++S++KPK P+LPLLLPGMIA
Sbjct: 121 ELMGLTGGFPGGEKGLRKFIEKNPPPKKSSIAISGSTAALVSTKKPKAPELPLLLPGMIA 180

Query: 181 IVKNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAV 240
           IV NPN+PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRL EL RR+KGPP KNP+S V
Sbjct: 181 IVNNPNSPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLGELMRRDKGPPGKNPKSCV 240

The following BLAST results are available for this feature:

BLAST of Lsi07G007210.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDHS_ARATH	1.6e-73	59.00	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of Lsi07G007210.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV29_CUCSA	2.2e-106	83.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052580 PE=4 SV=1	[more]
M5WAD8_PRUPE	2.5e-78	63.05	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010487mg PE=4 SV=1	[more]
A0A061G593_THECC	1.0e-76	64.61	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_016470 PE=4 SV=1	[more]
A0A067GD15_CITSI	7.5e-75	60.50	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044915mg PE=4 SV=1	[more]
A0A0F7CYV7_9ROSI	2.2e-74	61.48	Chlororespiratory reduction31 OS=Pelargonium tetragonum GN=NDHS PE=2 SV=1	[more]

BLAST of Lsi07G007210.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23890.1	8.8e-75	59.00	unknown protein	[more]

BLAST of Lsi07G007210.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102099\|ref\|XP_008451952.1\|	6.5e-112	85.54	PREDICTED: uncharacterized protein LOC103493099 [Cucumis melo]	[more]
gi\|449462539\|ref\|XP_004148998.1\|	5.5e-111	85.12	PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic isoform X1 [C...	[more]
gi\|700198250\|gb\|KGN53408.1\|	3.1e-106	83.61	hypothetical protein Csa_4G052580 [Cucumis sativus]	[more]
gi\|764581342\|ref\|XP_011463986.1\|	9.1e-82	66.53	PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Fragaria ves...	[more]
gi\|694354985\|ref\|XP_009358605.1\|	7.2e-79	63.45	PREDICTED: uncharacterized protein LOC103949228 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR021659	NdhS

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi07G007210	Lsi07G007210	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi07G007210.1.CDS.1	Lsi07G007210.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi07G007210.1	Lsi07G007210.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021659	Protein of unknown function DUF3252	PFAM	PF11623	DUF3252	coord: 165..216 score: 9.7
None	No IPR available	PANTHER	PTHR35494	FAMILY NOT NAMED	coord: 1..241 score: 5.9E
None	No IPR available	PANTHER	PTHR35494:SF1	SUBFAMILY NOT NAMED	coord: 1..241 score: 5.9E