Lsi05G003670 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G003670
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RALF
Location	chr05 : 4665172 .. 4665516 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACATTGGCCACACCATCAATGACAACCATCATTCTTCTCCTCCTCCTCATTCCGACTGGCTCCACCGTCAACCACACTGCCTCTTGCGACGGCAGCCACTCGGAGAAATGCCACCTTGTCCGAGAAGAGATGGCTGATTCCGAATTCATGATGGAATCGGAGATCCGACGAATGCTGTTAGACTACAACAAATTCAAAGCCCCACCAACTGGAAACCGCAACAAACAGGCGGTGGCGCCCTGTGGCCGACCACCGCGGTACGACAGTTGTCTTGGCCAGAAGAGTCAAACGCCACCAGGGGAAAAATGCGGCACCTACAAACGAGTGCCTTGTGGGTAA

mRNA sequence

ATGGCTACATTGGCCACACCATCAATGACAACCATCATTCTTCTCCTCCTCCTCATTCCGACTGGCTCCACCGTCAACCACACTGCCTCTTGCGACGGCAGCCACTCGGAGAAATGCCACCTTGTCCGAGAAGAGATGGCTGATTCCGAATTCATGATGGAATCGGAGATCCGACGAATGCTGTTAGACTACAACAAATTCAAAGCCCCACCAACTGGAAACCGCAACAAACAGGCGGTGGCGCCCTGTGGCCGACCACCGCGGTACGACAGTTGTCTTGGCCAGAAGAGTCAAACGCCACCAGGGGAAAAATGCGGCACCTACAAACGAGTGCCTTGTGGGTAA

Coding sequence (CDS)

ATGGCTACATTGGCCACACCATCAATGACAACCATCATTCTTCTCCTCCTCCTCATTCCGACTGGCTCCACCGTCAACCACACTGCCTCTTGCGACGGCAGCCACTCGGAGAAATGCCACCTTGTCCGAGAAGAGATGGCTGATTCCGAATTCATGATGGAATCGGAGATCCGACGAATGCTGTTAGACTACAACAAATTCAAAGCCCCACCAACTGGAAACCGCAACAAACAGGCGGTGGCGCCCTGTGGCCGACCACCGCGGTACGACAGTTGTCTTGGCCAGAAGAGTCAAACGCCACCAGGGGAAAAATGCGGCACCTACAAACGAGTGCCTTGTGGGTAA

Protein sequence

MATLATPSMTTIILLLLLIPTGSTVNHTASCDGSHSEKCHLVREEMADSEFMMESEIRRMLLDYNKFKAPPTGNRNKQAVAPCGRPPRYDSCLGQKSQTPPGEKCGTYKRVPCG

Homology

[Close]

BLAST of Lsi05G003670 vs. TrEMBL
Match: A0A0A0LCI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298050 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-27
Identity = 72/115 (62.61%), Postives = 88/115 (76.52%), Query Frame = 1


Query: 1   MATLATPSMTTIILLLLLIPTGSTVNHTA---SCDGSHSEKCHLVREEMADSEFMMESEI 60
           MA L+TPS+ TIILLLLLIP+G TVN TA   SC+ SHS+KCHLVR+++ D EFMMESE+
Sbjct: 1   MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM 60

Query: 61  RRML-LDYNKFKAPPTGNRNKQAVA-PCGRPPRYDSCLGQKSQTPPGEKCGTYKR 111
             ML ++Y+K+K+PPT   NKQ V   CGRPPRY+SCLG+K  T   EKC  YKR
Sbjct: 61  GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 115

[Close]

BLAST of Lsi05G003670 vs. TrEMBL
Match: A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.5e-17
Identity = 58/116 (50.00%), Postives = 72/116 (62.07%), Query Frame = 1


Query: 3   TLATPSMTTIILLLLLIPT--GSTVNHTAS--CDGSHSEKCHLVREEMADSEFMMESEIR 62
           T + P+M  +IL LL  PT   +TVN T S  C GS  E C LV +E  DSEF+ME+E  
Sbjct: 4   TFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGS--ENC-LVGDESLDSEFLMETETS 63

Query: 63  RMLLDYNKFKAPPTGNRNKQAVAPCGRPPRYDSCLGQKSQTPPGEKCGTYKRV-PC 114
           RMLLD+   + P T + N+Q+VA CGRPPRYDSC G++ Q P  E C    R  PC
Sbjct: 64  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of Lsi05G003670 vs. TrEMBL
Match: A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 53/118 (44.92%), Postives = 69/118 (58.47%), Query Frame = 1


Query: 2   ATLATPSMTTIILLLLLIP--TGSTVNHTAS--CDGSHSEKCHLVREEMADSEFMMESEI 61
           ATL  PSM  +I +LLL P  + + +N T S  CD +  E C LV +  + SEF+M +E 
Sbjct: 11  ATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENC-LVGDLNSHSEFLMLTES 70

Query: 62  RRMLLD-YNKFKAPPTGNRNKQAVAPCGRPPRYDSCLGQKSQTPPGEKCGTYKRV-PC 114
             ML+D +  F+ P   + NK++V  C RPPRYDSCLG K   P  E C T  RV PC
Sbjct: 71  SGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

[Close]

BLAST of Lsi05G003670 vs. TrEMBL
Match: A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-10
Identity = 46/111 (41.44%), Postives = 59/111 (53.15%), Query Frame = 1


Query: 13  ILLLLLIPT--GSTV-------NHTASCDGSHSEKCHLVREEMADSEFMMESEIRRMLLD 72
           ++L++LIPT  G  +       NHT     S     ++V EE   S F+MES I RML D
Sbjct: 15  MMLMMLIPTACGGALTSFKPLNNHT-----SGGLVKYMVEEEDIKSNFVMESHISRMLAD 74

Query: 73  YNKFKAPPTGNRNKQAVAPCGRPPRYDSCLGQKSQTPPGEKCGTYKRV-PC 114
              F+   T N  + +   C RPPRYDSCLG K  TPP + C T+ R  PC
Sbjct: 75  SQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of Lsi05G003670 vs. TrEMBL
Match: A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 44/117 (37.61%), Postives = 60/117 (51.28%), Query Frame = 1


Query: 2   ATLATPSMTTIILLLLLIPTG----STVNHTASCDGSHSEKCHLVREEMADSEFMMESEI 61
           + L  P+    ++LLL IP+     +T     S   S+  K  +  E+M + EF+MES I
Sbjct: 4   SALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDM-ELEFLMESHI 63

Query: 62  RRMLLDYNKFKAPPTGNRNKQAVAPCGRPPRYDSCLGQKSQTPPGEKCGTYKRV-PC 114
            R+L     ++   T N NK +   C RPPRYDSCLG+K   PP   C  Y R  PC
Sbjct: 64  SRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]

BLAST of Lsi05G003670 vs. NCBI nr
Match: gi|700202643|gb|KGN57776.1| (hypothetical protein Csa_3G298050 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 2.3e-27
Identity = 72/115 (62.61%), Postives = 88/115 (76.52%), Query Frame = 1


Query: 1   MATLATPSMTTIILLLLLIPTGSTVNHTA---SCDGSHSEKCHLVREEMADSEFMMESEI 60
           MA L+TPS+ TIILLLLLIP+G TVN TA   SC+ SHS+KCHLVR+++ D EFMMESE+
Sbjct: 1   MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM 60

Query: 61  RRML-LDYNKFKAPPTGNRNKQAVA-PCGRPPRYDSCLGQKSQTPPGEKCGTYKR 111
             ML ++Y+K+K+PPT   NKQ V   CGRPPRY+SCLG+K  T   EKC  YKR
Sbjct: 61  GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 115

[Close]

BLAST of Lsi05G003670 vs. NCBI nr
Match: gi|700198642|gb|KGN53800.1| (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 58/116 (50.00%), Postives = 72/116 (62.07%), Query Frame = 1


Query: 3   TLATPSMTTIILLLLLIPT--GSTVNHTAS--CDGSHSEKCHLVREEMADSEFMMESEIR 62
           T + P+M  +IL LL  PT   +TVN T S  C GS  E C LV +E  DSEF+ME+E  
Sbjct: 4   TFSIPTMAILILTLLFNPTRCNTTVNETTSEWCYGS--ENC-LVGDESLDSEFLMETETS 63

Query: 63  RMLLDYNKFKAPPTGNRNKQAVAPCGRPPRYDSCLGQKSQTPPGEKCGTYKRV-PC 114
           RMLLD+   + P T + N+Q+VA CGRPPRYDSC G++ Q P  E C    R  PC
Sbjct: 64  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of Lsi05G003670 vs. NCBI nr
Match: gi|700198640|gb|KGN53798.1| (hypothetical protein Csa_4G130630 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-12
Identity = 53/118 (44.92%), Postives = 69/118 (58.47%), Query Frame = 1


Query: 2   ATLATPSMTTIILLLLLIP--TGSTVNHTAS--CDGSHSEKCHLVREEMADSEFMMESEI 61
           ATL  PSM  +I +LLL P  + + +N T S  CD +  E C LV +  + SEF+M +E 
Sbjct: 11  ATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENC-LVGDLNSHSEFLMLTES 70

Query: 62  RRMLLD-YNKFKAPPTGNRNKQAVAPCGRPPRYDSCLGQKSQTPPGEKCGTYKRV-PC 114
             ML+D +  F+ P   + NK++V  C RPPRYDSCLG K   P  E C T  RV PC
Sbjct: 71  SGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

[Close]

BLAST of Lsi05G003670 vs. NCBI nr
Match: gi|778680757|ref|XP_011651393.1| (PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-10
Identity = 46/111 (41.44%), Postives = 59/111 (53.15%), Query Frame = 1


Query: 13  ILLLLLIPT--GSTV-------NHTASCDGSHSEKCHLVREEMADSEFMMESEIRRMLLD 72
           ++L++LIPT  G  +       NHT     S     ++V EE   S F+MES I RML D
Sbjct: 15  MMLMMLIPTACGGALTSFKPLNNHT-----SGGLVKYMVEEEDIKSNFVMESHISRMLAD 74

Query: 73  YNKFKAPPTGNRNKQAVAPCGRPPRYDSCLGQKSQTPPGEKCGTYKRV-PC 114
              F+   T N  + +   C RPPRYDSCLG K  TPP + C T+ R  PC
Sbjct: 75  SQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of Lsi05G003670 vs. NCBI nr
Match: gi|659114334|ref|XP_008457017.1| (PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 7.5e-10
Identity = 44/112 (39.29%), Postives = 60/112 (53.57%), Query Frame = 1


Query: 13  ILLLLLIPTGS---------TVNHTASCDGSHSEKCHLVREEMADSEFMMESEIRRMLLD 72
           +++++LIPT             NHT+        + ++V EE   S F+MES I RML D
Sbjct: 15  MMIMMLIPTACGGAFTFFKPLNNHTSG----GLVRYNMVEEEDTKSNFVMESHISRMLAD 74

Query: 73  YNK-FKAPPTGNRNKQAVAPCGRPPRYDSCLGQKSQTPPGEKCGTYKRV-PC 114
            ++ F+   T N  + +   C RPPRYDSCLG K  TPP + C TY R  PC
Sbjct: 75  SSQDFETSSTNNATQVSTGECDRPPRYDSCLGDKRNTPPPQNCSTYNREHPC 122

The following BLAST results are available for this feature:

BLAST of Lsi05G003670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G003670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCI8_CUCSA	1.6e-27	62.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298050 PE=4 SV=1	[more]
A0A0A0KVZ2_CUCSA	7.5e-17	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1	[more]
A0A0A0KW62_CUCSA	1.9e-12	44.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1	[more]
A0A0A0L711_CUCSA	1.8e-10	41.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1	[more]
A0A0A0LCJ4_CUCSA	2.0e-09	37.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1	[more]

BLAST of Lsi05G003670 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G003670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202643\|gb\|KGN57776.1\|	2.3e-27	62.61	hypothetical protein Csa_3G298050 [Cucumis sativus]	[more]
gi\|700198642\|gb\|KGN53800.1\|	1.1e-16	50.00	hypothetical protein Csa_4G131140 [Cucumis sativus]	[more]
gi\|700198640\|gb\|KGN53798.1\|	2.8e-12	44.92	hypothetical protein Csa_4G130630 [Cucumis sativus]	[more]
gi\|778680757\|ref\|XP_011651393.1\|	2.6e-10	41.44	PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus]	[more]
gi\|659114334\|ref\|XP_008457017.1\|	7.5e-10	39.29	PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G003670.1	Lsi05G003670.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G003670	Csa3G298050	Cucumber (Chinese Long) v2	culsiB206
Lsi05G003670	CSPI03G21060	Wild cucumber (PI 183967)	cpilsiB203
Lsi05G003670	Cla013230	Watermelon (97103) v1	lsiwmB361
Lsi05G003670	MELO3C020210	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G003670	ClCG05G011600	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G003670	MELO3C020210.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G003670	MELO3C020218.2	Melon (DHL92) v3.6.1	lsimedB406
Lsi05G003670	Cla97C05G093660	Watermelon (97103) v2	lsiwmbB329
Lsi05G003670	Bhi01G001476	Wax gourd	lsiwgoB447
Lsi05G003670	Cp4.1LG02g16980	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G003670	CsGy3G020560	Cucumber (Gy14) v2	cgyblsiB190
Lsi05G003670	Carg07463	Silver-seed gourd	carlsiB700
Lsi05G003670	CsaV3_3G020880	Cucumber (Chinese Long) v3	cuclsiB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G003670	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G003670	Cucumber (Chinese Long) v2	culsiB212
Lsi05G003670	Melon (DHL92) v3.5.1	lsimeB385
Lsi05G003670	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G003670	Silver-seed gourd	carlsiB435
Lsi05G003670	Cucumber (Chinese Long) v3	cuclsiB231
Lsi05G003670	Cucumber (Gy14) v1	cgylsiB004
Lsi05G003670	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G003670	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G003670	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G003670	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G003670	Cucurbita pepo (Zucchini)	cpelsiB511