MELO3C020210.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020210.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr06 : 16573252 .. 16573855 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCATTTCAGCACTCGTTCACCTCTCCATTGGACTTTCTTCTTAATTCAAACACCATGGCTGCACTGTCCACACCATCTATCGGGACCATCATTCTTTTTCTCCTCCTCATCCTCATCCGTTCCGGCTTCACCGTCAATGACACCACTGCCTCCGCCTCTTGCAACAACAGCCACTCAAAGAAATGCCACCTTGTCAGAGACGATATCGCGGATTACAAATTGATCATGATGGAATTGGAGATGGGACGGATGCTGTTAGACTTCAATAAATACACAACACCACAAACCGGAACAGCCAACAAGAATTCAGGGGGATCCTGTGGCCGACCACCGCGGTACGACAGTTGTCTTGGCGAGAAAAGGGATACGCCACCACAGGAAAAATGTTATGTCTACAAACGAGTGCCCTGTGGGTAATGAAATGGAAAAGAGTAGAATAAAAGGAAGATGAATTGTGGTTATAATTTGTGGGATGTGTTGTTAAGTGTGGATTGTCTGAGTTAAATTAATTTGGTCCATTTGTTGGAAGATGGATTTGGTTTTGGTACTTGTTTGTGAATGAATTAATTTGAAAATAACAATGTCTTTTGTGTTTAATTATAA

mRNA sequence

ACCATTTCAGCACTCGTTCACCTCTCCATTGGACTTTCTTCTTAATTCAAACACCATGGCTGCACTGTCCACACCATCTATCGGGACCATCATTCTTTTTCTCCTCCTCATCCTCATCCGTTCCGGCTTCACCGTCAATGACACCACTGCCTCCGCCTCTTGCAACAACAGCCACTCAAAGAAATGCCACCTTGTCAGAGACGATATCGCGGATTACAAATTGATCATGATGGAATTGGAGATGGGACGGATGCTGTTAGACTTCAATAAATACACAACACCACAAACCGGAACAGCCAACAAGAATTCAGGGGGATCCTGTGGCCGACCACCGCGGTACGACAGTTGTCTTGGCGAGAAAAGGGATACGCCACCACAGGAAAAATGTTATGTCTACAAACGAGTGCCCTGTGGGTAATGAAATGGAAAAGAGTAGAATAAAAGGAAGATGAATTGTGGTTATAATTTGTGGGATGTGTTGTTAAGTGTGGATTGTCTGAGTTAAATTAATTTGGTCCATTTGTTGGAAGATGGATTTGGTTTTGGTACTTGTTTGTGAATGAATTAATTTGAAAATAACAATGTCTTTTGTGTTTAATTATAA

Coding sequence (CDS)

ATGGCTGCACTGTCCACACCATCTATCGGGACCATCATTCTTTTTCTCCTCCTCATCCTCATCCGTTCCGGCTTCACCGTCAATGACACCACTGCCTCCGCCTCTTGCAACAACAGCCACTCAAAGAAATGCCACCTTGTCAGAGACGATATCGCGGATTACAAATTGATCATGATGGAATTGGAGATGGGACGGATGCTGTTAGACTTCAATAAATACACAACACCACAAACCGGAACAGCCAACAAGAATTCAGGGGGATCCTGTGGCCGACCACCGCGGTACGACAGTTGTCTTGGCGAGAAAAGGGATACGCCACCACAGGAAAAATGTTATGTCTACAAACGAGTGCCCTGTGGGTAA

Protein sequence

MAALSTPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDIADYKLIMMELEMGRMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRVPCG

Homology

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BLAST of MELO3C020210.2 vs. NCBI nr
Match: KGN57776.1 (hypothetical protein Csa_3G298050 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 2.6e-33
Identity = 84/118 (71.19%), Postives = 94/118 (79.66%), Query Frame = 0


Query: 1   MAALSTPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDIADYKLIMME 60
           MAALSTPSIGTII  LLL+LI SGFTVNDT ASASCN+SHSKKCHLVRDD+ DY+  MME
Sbjct: 1   MAALSTPSIGTII--LLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYE-FMME 60

Query: 61  LEMGRML-LDFNKYTTPQTGTANKN-SGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKR 117
            EMG ML ++++KY +P T  ANK      CGRPPRY+SCLG KRDT  QEKC VYKR
Sbjct: 61  SEMGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 115

[Close]

BLAST of MELO3C020210.2 vs. NCBI nr
Match: KGN53800.1 (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 7.4e-12
Identity = 54/116 (46.55%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 5   STPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDIADYKLIMMELEMG 64
           S P++  +IL LL    R   TVN+TT S  C    S+ C LV D+  D +  +ME E  
Sbjct: 6   SIPTMAILILTLLFNPTRCNTTVNETT-SEWCYG--SENC-LVGDESLDSE-FLMETETS 65

Query: 65  RMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRV-PC 120
           RMLLDF    TP T   N+ S   CGRPPRYDSC GE+R  P  E C V  R  PC
Sbjct: 66  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of MELO3C020210.2 vs. NCBI nr
Match: KGN53798.1 (hypothetical protein Csa_4G130630 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 9.0e-10
Identity = 48/119 (40.34%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 2   AALSTPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDIADYKLIMMEL 61
           A L+ PS+  +I  LLL  I S   +ND T S  C+++  + C LV D  +  + +M+  
Sbjct: 11  ATLTMPSMAFLITILLLNPIISNAGMND-TESKWCDSTGLENC-LVGDLNSHSEFLMLTE 70

Query: 62  EMGRMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRV-PC 120
             G ++  F  + TP+   ANK S   C RPPRYDSCLG KR  P  E C    RV PC
Sbjct: 71  SSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

[Close]

BLAST of MELO3C020210.2 vs. NCBI nr
Match: XP_022948338.1 (uncharacterized protein LOC111452044 [Cucurbita moschata])

HSP 1 Score: 72.8 bits (177), Expect = 9.0e-10
Identity = 42/105 (40.00%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 17  LLILIRSGFTVNDTTASASCNNSHSKK-CHLVRDDIADYKLIMMELEMGRMLLDFNKYTT 76
           ++IL+ +  T +  T+    NN  S    +L+ D   D +  +ME  + R+L     + T
Sbjct: 14  IMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSE-FLMESHISRILAGSQNFQT 73

Query: 77  PQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKR-VPC 120
            +T  ANK SGG CGRPPRYDSCLG+K + PP E C  + R  PC
Sbjct: 74  SKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of MELO3C020210.2 vs. NCBI nr
Match: XP_023523220.1 (uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.7 bits (169), Expect = 7.6e-09
Identity = 46/124 (37.10%), Postives = 62/124 (50.00%), Query Frame = 0


Query: 2   AALSTPSIGTIILFLLLILIRSGFTV-----NDTTASASCNNSHSKKCHLVRDDIADYKL 61
           AA   P+   I++ LL  +     T      NDT+A+           +L+ D   D + 
Sbjct: 4   AAAMIPAAMAIMILLLNPINSDALTSFKPLNNDTSAAGK---------YLIGDQDIDSE- 63

Query: 62  IMMELEMGRMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKR 120
            +ME  + R+L     + T  T  ANK SGG CGRPPRYDSCLG+K + PP E C  + R
Sbjct: 64  FLMESHISRILAGSQNFQTSNTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNR 117

[Close]

BLAST of MELO3C020210.2 vs. TrEMBL
Match: tr|A0A0A0LCI8|A0A0A0LCI8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298050 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.7e-33
Identity = 84/118 (71.19%), Postives = 94/118 (79.66%), Query Frame = 0


Query: 1   MAALSTPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDIADYKLIMME 60
           MAALSTPSIGTII  LLL+LI SGFTVNDT ASASCN+SHSKKCHLVRDD+ DY+  MME
Sbjct: 1   MAALSTPSIGTII--LLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYE-FMME 60

Query: 61  LEMGRML-LDFNKYTTPQTGTANKN-SGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKR 117
            EMG ML ++++KY +P T  ANK      CGRPPRY+SCLG KRDT  QEKC VYKR
Sbjct: 61  SEMGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 115

[Close]

BLAST of MELO3C020210.2 vs. TrEMBL
Match: tr|A0A0A0KVZ2|A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.9e-12
Identity = 54/116 (46.55%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 5   STPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDIADYKLIMMELEMG 64
           S P++  +IL LL    R   TVN+TT S  C    S+ C LV D+  D +  +ME E  
Sbjct: 6   SIPTMAILILTLLFNPTRCNTTVNETT-SEWCYG--SENC-LVGDESLDSE-FLMETETS 65

Query: 65  RMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRV-PC 120
           RMLLDF    TP T   N+ S   CGRPPRYDSC GE+R  P  E C V  R  PC
Sbjct: 66  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of MELO3C020210.2 vs. TrEMBL
Match: tr|A0A0A0KW62|A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.0e-10
Identity = 48/119 (40.34%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 2   AALSTPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDIADYKLIMMEL 61
           A L+ PS+  +I  LLL  I S   +ND T S  C+++  + C LV D  +  + +M+  
Sbjct: 11  ATLTMPSMAFLITILLLNPIISNAGMND-TESKWCDSTGLENC-LVGDLNSHSEFLMLTE 70

Query: 62  EMGRMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRV-PC 120
             G ++  F  + TP+   ANK S   C RPPRYDSCLG KR  P  E C    RV PC
Sbjct: 71  SSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

[Close]

BLAST of MELO3C020210.2 vs. TrEMBL
Match: tr|A0A0A0L711|A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.3e-08
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 58  MMELEMGRMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRV 117
           +ME  + RML D   + T  T  A + S G C RPPRYDSCLG KR+TPP + C  + R 
Sbjct: 58  VMESHISRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNRE 117

Query: 118 -PC 120
            PC
Sbjct: 118 HPC 120

[Close]

BLAST of MELO3C020210.2 vs. TrEMBL
Match: tr|A0A0A0LCJ4|A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 42/119 (35.29%), Postives = 59/119 (49.58%), Query Frame = 0


Query: 2   AALSTPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDIADYKLIMMEL 61
           +AL  P+   + + LLL +  S   +       S ++S+  K  +  +D+      +ME 
Sbjct: 4   SALMIPA-AVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDME--LEFLMES 63

Query: 62  EMGRMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRV-PC 120
            + R+L     Y T  T  ANK SGG C RPPRYDSCLG+KR+      C  Y R  PC
Sbjct: 64  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNXXXXPNCSPYNRANPC 119

The following BLAST results are available for this feature:

BLAST of MELO3C020210.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57776.1	2.6e-33	71.19	hypothetical protein Csa_3G298050 [Cucumis sativus]	[more]
KGN53800.1	7.4e-12	46.55	hypothetical protein Csa_4G131140 [Cucumis sativus]	[more]
KGN53798.1	9.0e-10	40.34	hypothetical protein Csa_4G130630 [Cucumis sativus]	[more]
XP_022948338.1	9.0e-10	40.00	uncharacterized protein LOC111452044 [Cucurbita moschata]	[more]
XP_023523220.1	7.6e-09	37.10	uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C020210.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C020210.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C020210.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LCI8\|A0A0A0LCI8_CUCSA	1.7e-33	71.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298050 PE=4 SV=1	[more]
tr\|A0A0A0KVZ2\|A0A0A0KVZ2_CUCSA	4.9e-12	46.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1	[more]
tr\|A0A0A0KW62\|A0A0A0KW62_CUCSA	6.0e-10	40.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1	[more]
tr\|A0A0A0L711\|A0A0A0L711_CUCSA	3.3e-08	49.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1	[more]
tr\|A0A0A0LCJ4\|A0A0A0LCJ4_CUCSA	1.1e-06	35.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020210.2.1	MELO3C020210.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020210.2	Csa3G298050	Cucumber (Chinese Long) v2	cumedB239
MELO3C020210.2	CSPI03G21060	Wild cucumber (PI 183967)	cpimedB240
MELO3C020210.2	CmaCh01G003790	Cucurbita maxima (Rimu)	cmamedB496
MELO3C020210.2	CmoCh01G003970	Cucurbita moschata (Rifu)	cmomedB483
MELO3C020210.2	Lsi05G003670	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C020210.2	Cla013230	Watermelon (97103) v1	medwmB462
MELO3C020210.2	ClCG05G011600	Watermelon (Charleston Gray)	medwcgB431
MELO3C020210.2	Cla97C05G093660	Watermelon (97103) v2	medwmbB437
MELO3C020210.2	Bhi01G001476	Wax gourd	medwgoB546
MELO3C020210.2	CsaV3_3G020880	Cucumber (Chinese Long) v3	cucmedB247

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020210.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C020210.2	Watermelon (97103) v1	medwmB448
MELO3C020210.2	Silver-seed gourd	carmedB0489
MELO3C020210.2	Watermelon (97103) v2	medwmbB424
MELO3C020210.2	Wax gourd	medwgoB540
MELO3C020210.2	Cucumber (Gy14) v2	cgybmedB216
MELO3C020210.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C020210.2	Cucurbita moschata (Rifu)	cmomedB259
MELO3C020210.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C020210.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C020210.2	Cucurbita pepo (Zucchini)	cpemedB692
MELO3C020210.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C020210.2	Bottle gourd (USVL1VR-Ls)	lsimedB406