CSPI03G21060 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G21060
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 17129922 .. 17130496 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCATCACTCGTTCACCTCTCCATTGGACTTTCTTCTTCAAACACCATGGCTGCACTGTCCACACCATCCATCGGGACCATCATTCTCCTTCTCCTCCTCATTCCTTCCGGCTTCACCGTTAATGACACTGCTGCCTCCGCCTCTTGCAACAGCAGCCACTCAAAGAAATGCCACCTTGTGAGAGACGATGTCGGAGATTACGAATTCATGATGGAATCGGAGATGGGATGGATGCTGTCAATTAACTACGATAAATACAAATCACCACCAACCAGAATAGCCAACAAGCAGGTAGTGAAAGACGACTGTGGCCGACCACCGCGGTACGAAAGTTGTCTTGGCAGGAAAAGGGACACGCTGATACAGGAAAAATGTGCTGTCTACAAACGAGGCTGTTAATGAAATGGAAAAGAGTAGAATAAAAGGAAGATGGATTTGTGGTTAACATTTGTGGGATGTGTTGTTAAGTGGATGTCTAAGTTAAATTAATTTGGTTCGTTTGTTGGAAGGTGGATTTAGTTTTGGTGTAGATGTTTGTGAATCAATTAATTTGAAAAATAACAATGTCTTTT

mRNA sequence

ATGGCTGCACTGTCCACACCATCCATCGGGACCATCATTCTCCTTCTCCTCCTCATTCCTTCCGGCTTCACCGTTAATGACACTGCTGCCTCCGCCTCTTGCAACAGCAGCCACTCAAAGAAATGCCACCTTGTGAGAGACGATGTCGGAGATTACGAATTCATGATGGAATCGGAGATGGGATGGATGCTGTCAATTAACTACGATAAATACAAATCACCACCAACCAGAATAGCCAACAAGCAGGTAGTGAAAGACGACTGTGGCCGACCACCGCGGTACGAAAGTTGTCTTGGCAGGAAAAGGGACACGCTGATACAGGAAAAATGTGCTGTCTACAAACGAGGCTGTTAA

Coding sequence (CDS)

ATGGCTGCACTGTCCACACCATCCATCGGGACCATCATTCTCCTTCTCCTCCTCATTCCTTCCGGCTTCACCGTTAATGACACTGCTGCCTCCGCCTCTTGCAACAGCAGCCACTCAAAGAAATGCCACCTTGTGAGAGACGATGTCGGAGATTACGAATTCATGATGGAATCGGAGATGGGATGGATGCTGTCAATTAACTACGATAAATACAAATCACCACCAACCAGAATAGCCAACAAGCAGGTAGTGAAAGACGACTGTGGCCGACCACCGCGGTACGAAAGTTGTCTTGGCAGGAAAAGGGACACGCTGATACAGGAAAAATGTGCTGTCTACAAACGAGGCTGTTAA
Homology
[Close]
BLAST of CSPI03G21060 vs. TrEMBL
Match: A0A0A0LCI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298050 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.3e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 

Query: 1   MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM 60
           MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM
Sbjct: 1   MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM 60

Query: 61  GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC 118
           GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC
Sbjct: 61  GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC 117

[Close]
BLAST of CSPI03G21060 vs. TrEMBL
Match: A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.8e-09
Identity = 47/116 (40.52%), Postives = 64/116 (55.17%), Query Frame = 1 

Query: 2   AALSTPSIGTIILLLLLIP--SGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESE 61
           A L+ PS+  +I +LLL P  S   +NDT  S  C+S+  + C LV D     EF+M +E
Sbjct: 11  ATLTMPSMAFLITILLLNPIISNAGMNDTE-SKWCDSTGLENC-LVGDLNSHSEFLMLTE 70

Query: 62  MGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 116
              ML   +  +++P    ANK+ V D C RPPRY+SCLG KR     E C+   R
Sbjct: 71  SSGMLVDQFLTFQTPKANDANKESVPD-CSRPPRYDSCLGSKRSIPNPEPCSTLNR 123

[Close]
BLAST of CSPI03G21060 vs. TrEMBL
Match: A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 1 

Query: 5   STPSIGTIILLLLLIPS--GFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEMGW 64
           S P++  +IL LL  P+    TVN+T +     S +     LV D+  D EF+ME+E   
Sbjct: 6   SIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENC----LVGDESLDSEFLMETETSR 65

Query: 65  MLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 116
           ML +++   ++P T   N+Q V + CGRPPRY+SC G +R     E C V  R
Sbjct: 66  ML-LDFQNLQTPGTIDPNRQSVAE-CGRPPRYDSCTGEERQIPNPENCDVRNR 112

[Close]
BLAST of CSPI03G21060 vs. NCBI nr
Match: gi|700202643|gb|KGN57776.1| (hypothetical protein Csa_3G298050 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 3.3e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 

Query: 1   MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM 60
           MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM
Sbjct: 1   MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM 60

Query: 61  GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC 118
           GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC
Sbjct: 61  GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC 117

[Close]
BLAST of CSPI03G21060 vs. NCBI nr
Match: gi|700198640|gb|KGN53798.1| (hypothetical protein Csa_4G130630 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 47/116 (40.52%), Postives = 64/116 (55.17%), Query Frame = 1 

Query: 2   AALSTPSIGTIILLLLLIP--SGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESE 61
           A L+ PS+  +I +LLL P  S   +NDT  S  C+S+  + C LV D     EF+M +E
Sbjct: 11  ATLTMPSMAFLITILLLNPIISNAGMNDTE-SKWCDSTGLENC-LVGDLNSHSEFLMLTE 70

Query: 62  MGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 116
              ML   +  +++P    ANK+ V D C RPPRY+SCLG KR     E C+   R
Sbjct: 71  SSGMLVDQFLTFQTPKANDANKESVPD-CSRPPRYDSCLGSKRSIPNPEPCSTLNR 123

[Close]
BLAST of CSPI03G21060 vs. NCBI nr
Match: gi|700198642|gb|KGN53800.1| (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-07
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 1 

Query: 5   STPSIGTIILLLLLIPS--GFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEMGW 64
           S P++  +IL LL  P+    TVN+T +     S +     LV D+  D EF+ME+E   
Sbjct: 6   SIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENC----LVGDESLDSEFLMETETSR 65

Query: 65  MLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 116
           ML +++   ++P T   N+Q V + CGRPPRY+SC G +R     E C V  R
Sbjct: 66  ML-LDFQNLQTPGTIDPNRQSVAE-CGRPPRYDSCTGEERQIPNPENCDVRNR 112

The following BLAST results are available for this feature:
BLAST of CSPI03G21060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G21060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCI8_CUCSA2.3e-61100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298050 PE=4 SV=1[more]
A0A0A0KW62_CUCSA7.8e-0940.52Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1[more]
A0A0A0KVZ2_CUCSA1.5e-0738.05Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1[more]
BLAST of CSPI03G21060 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G21060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202643|gb|KGN57776.1|3.3e-61100.00hypothetical protein Csa_3G298050 [Cucumis sativus][more]
gi|700198640|gb|KGN53798.1|1.1e-0840.52hypothetical protein Csa_4G130630 [Cucumis sativus][more]
gi|700198642|gb|KGN53800.1|2.1e-0738.05hypothetical protein Csa_4G131140 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G21060.1CSPI03G21060.1mRNA