MELO3C020210 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020210
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Glutamate--tRNA ligase 1
Location	chr6 : 15495985 .. 15496588 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCATTTCAGCACTCGTTCACCTCTCCATTGGACTTTCTTCTTAATTCAAACACCATGGCTGCACTGTCCACACCATCTATCGGGACCATCATTCTTTTTCTCCTCCTCATCCTCATCCGTTCCGGCTTCACCGTCAATGACACCACTGCCTCCGCCTCTTGCAACAACAGCCACTCAAAGAAATGCCACCTTGTCAGAGACGATATCGCGGATTACAAATTGATCATGATGGAATTGGAGATGGGACGGATGCTGTTAGACTTCAATAAATACACAACACCACAAACCGGAACAGCCAACAAGAATTCAGGGGGATCCTGTGGCCGACCACCGCGGTACGACAGTTGTCTTGGCGAGAAAAGGGATACGCCACCACAGGAAAAATGTTATGTCTACAAACGAGTGCCCTGTGGGTAATGAAATGGAAAAGAGTAGAATAAAAGGAAGATGAATTGTGGTTATAATTTGTGGGATGTGTTGTTAAGTGTGGATTGTCTGAGTTAAATTAATTTGGTCCATTTGTTGGAAGATGGATTTGGTTTTGGTACTTGTTTGTGAATGAATTAATTTGAAAATAACAATGTCTTTTGTGTTTAATTATAA

mRNA sequence

ACCATTTCAGCACTCGTTCACCTCTCCATTGGACTTTCTTCTTAATTCAAACACCATGGCTGCACTGTCCACACCATCTATCGGGACCATCATTCTTTTTCTCCTCCTCATCCTCATCCGTTCCGGCTTCACCGTCAATGACACCACTGCCTCCGCCTCTTGCAACAACAGCCACTCAAAGAAATGCCACCTTGTCAGAGACGATATCGCGGATTACAAATTGATCATGATGGAATTGGAGATGGGACGGATGCTGTTAGACTTCAATAAATACACAACACCACAAACCGGAACAGCCAACAAGAATTCAGGGGGATCCTGTGGCCGACCACCGCGGTACGACAGTTGTCTTGGCGAGAAAAGGGATACGCCACCACAGGAAAAATGTTATGTCTACAAACGAGTGCCCTGTGGGTAATGAAATGGAAAAGAGTAGAATAAAAGGAAGATGAATTGTGGTTATAATTTGTGGGATGTGTTGTTAAGTGTGGATTGTCTGAGTTAAATTAATTTGGTCCATTTGTTGGAAGATGGATTTGGTTTTGGTACTTGTTTGTGAATGAATTAATTTGAAAATAACAATGTCTTTTGTGTTTAATTATAA

Coding sequence (CDS)

ATGGCTGCACTGTCCACACCATCTATCGGGACCATCATTCTTTTTCTCCTCCTCATCCTCATCCGTTCCGGCTTCACCGTCAATGACACCACTGCCTCCGCCTCTTGCAACAACAGCCACTCAAAGAAATGCCACCTTGTCAGAGACGATATCGCGGATTACAAATTGATCATGATGGAATTGGAGATGGGACGGATGCTGTTAGACTTCAATAAATACACAACACCACAAACCGGAACAGCCAACAAGAATTCAGGGGGATCCTGTGGCCGACCACCGCGGTACGACAGTTGTCTTGGCGAGAAAAGGGATACGCCACCACAGGAAAAATGTTATGTCTACAAACGAGTGCCCTGTGGGTAA

Protein sequence

MAALSTPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDIADYKLIMMELEMGRMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRVPCG*

Homology

[Close]

BLAST of MELO3C020210 vs. TrEMBL
Match: A0A0A0LCI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298050 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.0e-35
Identity = 84/118 (71.19%), Postives = 94/118 (79.66%), Query Frame = 1


Query: 1   MAALSTPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDIADYKLIMME 60
           MAALSTPSIGTIIL  LL+LI SGFTVNDT ASASCN+SHSKKCHLVRDD+ DY+  MME
Sbjct: 1   MAALSTPSIGTIIL--LLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYE-FMME 60

Query: 61  LEMGRML-LDFNKYTTPQTGTANKN-SGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKR 117
            EMG ML ++++KY +P T  ANK      CGRPPRY+SCLG KRDT  QEKC VYKR
Sbjct: 61  SEMGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 115

[Close]

BLAST of MELO3C020210 vs. TrEMBL
Match: A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-13
Identity = 54/116 (46.55%), Postives = 64/116 (55.17%), Query Frame = 1


Query: 5   STPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDIADYKLIMMELEMG 64
           S P++  +IL LL    R   TVN+TT S  C  S +  C LV D+  D + +M E E  
Sbjct: 6   SIPTMAILILTLLFNPTRCNTTVNETT-SEWCYGSEN--C-LVGDESLDSEFLM-ETETS 65

Query: 65  RMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRV-PC 120
           RMLLDF    TP T   N+ S   CGRPPRYDSC GE+R  P  E C V  R  PC
Sbjct: 66  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of MELO3C020210 vs. TrEMBL
Match: A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-11
Identity = 48/119 (40.34%), Postives = 64/119 (53.78%), Query Frame = 1


Query: 2   AALSTPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDIADYKLIMMEL 61
           A L+ PS+  +I  LLL  I S   +NDT  S  C+++  + C LV D  +  + +M+  
Sbjct: 11  ATLTMPSMAFLITILLLNPIISNAGMNDTE-SKWCDSTGLENC-LVGDLNSHSEFLMLTE 70

Query: 62  EMGRMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRV-PC 120
             G ++  F  + TP+   ANK S   C RPPRYDSCLG KR  P  E C    RV PC
Sbjct: 71  SSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

[Close]

BLAST of MELO3C020210 vs. TrEMBL
Match: A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.3e-10
Identity = 44/119 (36.97%), Postives = 61/119 (51.26%), Query Frame = 1


Query: 2   AALSTPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDIADYKLIMMEL 61
           +AL  P+   + + LLL +  S   +       S ++S+  K  +  +D+      +ME 
Sbjct: 4   SALMIPA-AVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDME--LEFLMES 63

Query: 62  EMGRMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRV-PC 120
            + R+L     Y T  T  ANK SGG C RPPRYDSCLG+KR+ PP   C  Y R  PC
Sbjct: 64  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]

BLAST of MELO3C020210 vs. TrEMBL
Match: A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 1


Query: 58  MMELEMGRMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRV 117
           +ME  + RML D   + T  T  A + S G C RPPRYDSCLG KR+TPP + C  + R 
Sbjct: 58  VMESHISRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNRE 117

Query: 118 -PC 120
            PC
Sbjct: 118 HPC 120

[Close]

BLAST of MELO3C020210 vs. NCBI nr
Match: gi|700202643|gb|KGN57776.1| (hypothetical protein Csa_3G298050 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 7.2e-35
Identity = 84/118 (71.19%), Postives = 94/118 (79.66%), Query Frame = 1


Query: 1   MAALSTPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDIADYKLIMME 60
           MAALSTPSIGTIIL  LL+LI SGFTVNDT ASASCN+SHSKKCHLVRDD+ DY+  MME
Sbjct: 1   MAALSTPSIGTIIL--LLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYE-FMME 60

Query: 61  LEMGRML-LDFNKYTTPQTGTANKN-SGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKR 117
            EMG ML ++++KY +P T  ANK      CGRPPRY+SCLG KRDT  QEKC VYKR
Sbjct: 61  SEMGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 115

[Close]

BLAST of MELO3C020210 vs. NCBI nr
Match: gi|700198642|gb|KGN53800.1| (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 3.5e-13
Identity = 54/116 (46.55%), Postives = 64/116 (55.17%), Query Frame = 1


Query: 5   STPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDIADYKLIMMELEMG 64
           S P++  +IL LL    R   TVN+TT S  C  S +  C LV D+  D + +M E E  
Sbjct: 6   SIPTMAILILTLLFNPTRCNTTVNETT-SEWCYGSEN--C-LVGDESLDSEFLM-ETETS 65

Query: 65  RMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRV-PC 120
           RMLLDF    TP T   N+ S   CGRPPRYDSC GE+R  P  E C V  R  PC
Sbjct: 66  RMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of MELO3C020210 vs. NCBI nr
Match: gi|700198640|gb|KGN53798.1| (hypothetical protein Csa_4G130630 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.5e-11
Identity = 48/119 (40.34%), Postives = 64/119 (53.78%), Query Frame = 1


Query: 2   AALSTPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDIADYKLIMMEL 61
           A L+ PS+  +I  LLL  I S   +NDT  S  C+++  + C LV D  +  + +M+  
Sbjct: 11  ATLTMPSMAFLITILLLNPIISNAGMNDTE-SKWCDSTGLENC-LVGDLNSHSEFLMLTE 70

Query: 62  EMGRMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRV-PC 120
             G ++  F  + TP+   ANK S   C RPPRYDSCLG KR  P  E C    RV PC
Sbjct: 71  SSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

[Close]

BLAST of MELO3C020210 vs. NCBI nr
Match: gi|700202648|gb|KGN57781.1| (hypothetical protein Csa_3G298580 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 6.1e-10
Identity = 44/119 (36.97%), Postives = 61/119 (51.26%), Query Frame = 1


Query: 2   AALSTPSIGTIILFLLLILIRSGFTVNDTTASASCNNSHSKKCHLVRDDIADYKLIMMEL 61
           +AL  P+   + + LLL +  S   +       S ++S+  K  +  +D+      +ME 
Sbjct: 4   SALMIPA-AVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDME--LEFLMES 63

Query: 62  EMGRMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRV-PC 120
            + R+L     Y T  T  ANK SGG C RPPRYDSCLG+KR+ PP   C  Y R  PC
Sbjct: 64  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]

BLAST of MELO3C020210 vs. NCBI nr
Match: gi|778680757|ref|XP_011651393.1| (PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-08
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 1


Query: 58  MMELEMGRMLLDFNKYTTPQTGTANKNSGGSCGRPPRYDSCLGEKRDTPPQEKCYVYKRV 117
           +ME  + RML D   + T  T  A + S G C RPPRYDSCLG KR+TPP + C  + R 
Sbjct: 58  VMESHISRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNRE 117

Query: 118 -PC 120
            PC
Sbjct: 118 HPC 120

The following BLAST results are available for this feature:

BLAST of MELO3C020210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCI8_CUCSA	5.0e-35	71.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298050 PE=4 SV=1	[more]
A0A0A0KVZ2_CUCSA	2.4e-13	46.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1	[more]
A0A0A0KW62_CUCSA	1.7e-11	40.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1	[more]
A0A0A0LCJ4_CUCSA	4.3e-10	36.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1	[more]
A0A0A0L711_CUCSA	1.4e-08	49.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1	[more]

BLAST of MELO3C020210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202643\|gb\|KGN57776.1\|	7.2e-35	71.19	hypothetical protein Csa_3G298050 [Cucumis sativus]	[more]
gi\|700198642\|gb\|KGN53800.1\|	3.5e-13	46.55	hypothetical protein Csa_4G131140 [Cucumis sativus]	[more]
gi\|700198640\|gb\|KGN53798.1\|	2.5e-11	40.34	hypothetical protein Csa_4G130630 [Cucumis sativus]	[more]
gi\|700202648\|gb\|KGN57781.1\|	6.1e-10	36.97	hypothetical protein Csa_3G298580 [Cucumis sativus]	[more]
gi\|778680757\|ref\|XP_011651393.1\|	2.0e-08	49.21	PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU61494	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020210T1	MELO3C020210T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU61494	MU61494	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020210	Csa3G298050	Cucumber (Chinese Long) v2	cumeB246
MELO3C020210	Cla013230	Watermelon (97103) v1	mewmB474
MELO3C020210	ClCG05G011600	Watermelon (Charleston Gray)	mewcgB434
MELO3C020210	Cla97C05G093660	Watermelon (97103) v2	mewmbB444
MELO3C020210	Bhi01G001476	Wax gourd	mewgoB542
MELO3C020210	CSPI03G21060	Wild cucumber (PI 183967)	cpimeB243
MELO3C020210	CmaCh01G003790	Cucurbita maxima (Rimu)	cmameB431
MELO3C020210	CmoCh01G003970	Cucurbita moschata (Rifu)	cmomeB421
MELO3C020210	Lsi05G003670	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C020210	CsaV3_3G020880	Cucumber (Chinese Long) v3	cucmeB249

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020210	Cucurbita pepo (Zucchini)	cpemeB529
MELO3C020210	Cucurbita pepo (Zucchini)	cpemeB583
MELO3C020210	Cucurbita pepo (Zucchini)	cpemeB586
MELO3C020210	Bottle gourd (USVL1VR-Ls)	lsimeB385
MELO3C020210	Cucumber (Gy14) v2	cgybmeB212
MELO3C020210	Silver-seed gourd	carmeB0485
MELO3C020210	Watermelon (97103) v2	mewmbB434
MELO3C020210	Wax gourd	mewgoB539
MELO3C020210	Cucurbita maxima (Rimu)	cmameB243
MELO3C020210	Cucurbita moschata (Rifu)	cmomeB229
MELO3C020210	Cucurbita moschata (Rifu)	cmomeB231
MELO3C020210	Watermelon (Charleston Gray)	mewcgB427
MELO3C020210	Watermelon (97103) v1	mewmB461