CsaV3_3G020880 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G020880
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 17258184 .. 17259478 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACACAACATAAACTCTTGAATATTGAATTATCATCATCACGTGACTCTTTTTCCTTTTAACTTGAAAAGGAAAATGAGAAATAAAAATCACCTCCTATTCAATCTAATATTCCAGAATCAATAAATAAAATTGGATCCAAGCATCAAAGTCCCCCAACTACCAACGGCCCCCCAAAATTCAATATCTTCCATAGTTTCATTAATCTTCATTGTTATCTCTTCACCATTTCATCACTCGTTCACCTCTCCATTGGACTTTCTTCTTCAAACACCATGGCTGCACTGTCCACACCATCCATCGGGACCATCATTCTCCTTCTCCTCCTCATTCCTTCCGGCTTCACCGTTAATGACACTGCTGCCTCCGCCTCTTGCAACAGCAGCCACTCAAAGAAATGCCACCTTGTGAGAGACGATGTCGGAGATTACGAATTCATGATGGAATCGGAGATGGGATGGATGCTGTCAATTAACTACGATAAATACAAATCACCACCAACCAGAATAGCCAACAAGCAGGTAGTGAAAGACGACTGTGGCCGACCACCGCGGTACGAAAGTTGTCTTGGCAGGAAAAGGGACACGCTGATACAGGAAAAATGTGCTGTCTACAAACGAGGCTGTTAATGAAATGGAAAAGAGTAGAATAAAAGGAAGATGGATTTGTGGTTAACATTTGTGGGATGTGTTGTTAAGTGGATGTCTAAGTTAAATTAATTTGGTTCGTTTGTTGGAAGGTGGATTTAGTTTTGGTGTAGATGTTTGTGAATCAATTAATTTGAAAAATAACAATGTCTTTTGTGGTTTTATGTATGTTTTTCTTTTATTGATTTTAGTTTGGATTTTCAAAATATTCATTGGAAATAGATCAAAAGGGGAGAAAATTTAGAAGTGGAATAAGTGTTTATTGGTTTGATTTTAAAAAATTAAAAGTCAAAACACCAAATACTTACCAAATAAATCTTTAATAATCAATTTTTTTCTTTTTGGCAAGGAATTTTCACTTTTGAAAAAGCTATCTCAAAGAAAATGAAGGTAAATTTATGCTGACTTCTTGTTTTGTTAATTCTTTTTCCAACAAAAACAAACAATAATTTATTTAGAAATTTATTTTGCACTTTATATTATAAAAAACATGACTATATACATATAGCTAAGATTAGAAGTAGATTTTGAAAAATAGAGAAATGTTTTTTCGTTTACAAAAAAGCCAACAAAAAGATCAAACCAACTGATGTTTTTCTAAATTCCGTAATAGACCAAAACGCCCTAAGAGAGAATCAAATCATGTAAT

mRNA sequence

ATGGCTGCACTGTCCACACCATCCATCGGGACCATCATTCTCCTTCTCCTCCTCATTCCTTCCGGCTTCACCGTTAATGACACTGCTGCCTCCGCCTCTTGCAACAGCAGCCACTCAAAGAAATGCCACCTTGTGAGAGACGATGTCGGAGATTACGAATTCATGATGGAATCGGAGATGGGATGGATGCTGTCAATTAACTACGATAAATACAAATCACCACCAACCAGAATAGCCAACAAGCAGGTAGTGAAAGACGACTGTGGCCGACCACCGCGGTACGAAAGTTGTCTTGGCAGGAAAAGGGACACGCTGATACAGGAAAAATGTGCTGTCTACAAACGAGGCTGTTAA

Coding sequence (CDS)

ATGGCTGCACTGTCCACACCATCCATCGGGACCATCATTCTCCTTCTCCTCCTCATTCCTTCCGGCTTCACCGTTAATGACACTGCTGCCTCCGCCTCTTGCAACAGCAGCCACTCAAAGAAATGCCACCTTGTGAGAGACGATGTCGGAGATTACGAATTCATGATGGAATCGGAGATGGGATGGATGCTGTCAATTAACTACGATAAATACAAATCACCACCAACCAGAATAGCCAACAAGCAGGTAGTGAAAGACGACTGTGGCCGACCACCGCGGTACGAAAGTTGTCTTGGCAGGAAAAGGGACACGCTGATACAGGAAAAATGTGCTGTCTACAAACGAGGCTGTTAA

Protein sequence

MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEMGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC

Homology

[Close]

BLAST of CsaV3_3G020880 vs. NCBI nr
Match: KGN57776.1 (hypothetical protein Csa_3G298050 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 6.5e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM 60
           MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM
Sbjct: 1   MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM 60

Query: 61  GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC 118
           GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC
Sbjct: 61  GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC 117

[Close]

BLAST of CsaV3_3G020880 vs. NCBI nr
Match: XP_022143304.1 (uncharacterized protein LOC111013208 [Momordica charantia])

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-09
Identity = 46/116 (39.66%), Postives = 61/116 (52.59%), Query Frame = 0


Query: 2   AALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEMG 61
           AAL  P+    I+ LLL P+G       A  S N + +   HLV D   D EF+MES + 
Sbjct: 6   AALMIPT-AVAIVFLLLSPTG-----CIALISSNDTSNTIKHLVGDKDLDSEFLMESHLS 65

Query: 62  WMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC 118
            +L+ N   +++  T  AN+  V  DC R PRY+SCLG+K      E CA Y R C
Sbjct: 66  RILASNSQNFQTSSTNNANRAAV--DCSRQPRYDSCLGQKNGVPPPENCATYNRVC 113

[Close]

BLAST of CsaV3_3G020880 vs. NCBI nr
Match: KGN53798.1 (hypothetical protein Csa_4G130630 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-08
Identity = 47/116 (40.52%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 2   AALSTPSIGTIILLLLLIP--SGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESE 61
           A L+ PS+  +I +LLL P  S   +NDT  S  C+S+  + C LV D     EF+M +E
Sbjct: 11  ATLTMPSMAFLITILLLNPIISNAGMNDT-ESKWCDSTGLENC-LVGDLNSHSEFLMLTE 70

Query: 62  MGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 116
              ML   +  +++P    ANK+ V  DC RPPRY+SCLG KR     E C+   R
Sbjct: 71  SSGMLVDQFLTFQTPKANDANKESV-PDCSRPPRYDSCLGSKRSIPNPEPCSTLNR 123

[Close]

BLAST of CsaV3_3G020880 vs. NCBI nr
Match: KGN53800.1 (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-07
Identity = 46/113 (40.71%), Postives = 64/113 (56.64%), Query Frame = 0


Query: 5   STPSIGTIILLLLLIPS--GFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEMGW 64
           S P++  +IL LL  P+    TVN+T  S  C    S+ C LV D+  D EF+ME+E   
Sbjct: 6   SIPTMAILILTLLFNPTRCNTTVNET-TSEWCYG--SENC-LVGDESLDSEFLMETETSR 65

Query: 65  MLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 116
           ML +++   ++P T   N+Q V  +CGRPPRY+SC G +R     E C V  R
Sbjct: 66  ML-LDFQNLQTPGTIDPNRQSVA-ECGRPPRYDSCTGEERQIPNPENCDVRNR 112

[Close]

BLAST of CsaV3_3G020880 vs. NCBI nr
Match: KGN57781.1 (hypothetical protein Csa_3G298580 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 2.3e-05
Identity = 41/115 (35.65%), Postives = 61/115 (53.04%), Query Frame = 0


Query: 2   AALSTPSIGTIILLLLLIPSGFTVNDTAASASCN-SSHSKKCHLVRDDVGDYEFMMESEM 61
           +AL  P+    ++LLL IPS      T      N SS+  K  +  +D+ + EF+MES +
Sbjct: 4   SALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDM-ELEFLMESHI 63

Query: 62  GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 116
             +L+ +   Y++  T  ANK      C RPPRY+SCLG+KR+      C+ Y R
Sbjct: 64  SRILA-SSKNYQTASTTNANK-ASGGGCDRPPRYDSCLGKKRNXXXXPNCSPYNR 115

[Close]

BLAST of CsaV3_3G020880 vs. TrEMBL
Match: tr|A0A0A0LCI8|A0A0A0LCI8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298050 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 4.3e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM 60
           MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM
Sbjct: 1   MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM 60

Query: 61  GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC 118
           GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC
Sbjct: 61  GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC 117

[Close]

BLAST of CsaV3_3G020880 vs. TrEMBL
Match: tr|A0A0A0KW62|A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 47/116 (40.52%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 2   AALSTPSIGTIILLLLLIP--SGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESE 61
           A L+ PS+  +I +LLL P  S   +NDT  S  C+S+  + C LV D     EF+M +E
Sbjct: 11  ATLTMPSMAFLITILLLNPIISNAGMNDT-ESKWCDSTGLENC-LVGDLNSHSEFLMLTE 70

Query: 62  MGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 116
              ML   +  +++P    ANK+ V  DC RPPRY+SCLG KR     E C+   R
Sbjct: 71  SSGMLVDQFLTFQTPKANDANKESV-PDCSRPPRYDSCLGSKRSIPNPEPCSTLNR 123

[Close]

BLAST of CsaV3_3G020880 vs. TrEMBL
Match: tr|A0A0A0KVZ2|A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07
Identity = 46/113 (40.71%), Postives = 64/113 (56.64%), Query Frame = 0


Query: 5   STPSIGTIILLLLLIPS--GFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEMGW 64
           S P++  +IL LL  P+    TVN+T  S  C    S+ C LV D+  D EF+ME+E   
Sbjct: 6   SIPTMAILILTLLFNPTRCNTTVNET-TSEWCYG--SENC-LVGDESLDSEFLMETETSR 65

Query: 65  MLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 116
           ML +++   ++P T   N+Q V  +CGRPPRY+SC G +R     E C V  R
Sbjct: 66  ML-LDFQNLQTPGTIDPNRQSVA-ECGRPPRYDSCTGEERQIPNPENCDVRNR 112

[Close]

BLAST of CsaV3_3G020880 vs. TrEMBL
Match: tr|A0A0A0LCJ4|A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-05
Identity = 41/115 (35.65%), Postives = 61/115 (53.04%), Query Frame = 0


Query: 2   AALSTPSIGTIILLLLLIPSGFTVNDTAASASCN-SSHSKKCHLVRDDVGDYEFMMESEM 61
           +AL  P+    ++LLL IPS      T      N SS+  K  +  +D+ + EF+MES +
Sbjct: 4   SALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDM-ELEFLMESHI 63

Query: 62  GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 116
             +L+ +   Y++  T  ANK      C RPPRY+SCLG+KR+      C+ Y R
Sbjct: 64  SRILA-SSKNYQTASTTNANK-ASGGGCDRPPRYDSCLGKKRNXXXXPNCSPYNR 115

[Close]

BLAST of CsaV3_3G020880 vs. TrEMBL
Match: tr|A0A2I4HMA1|A0A2I4HMA1_9ROSI (uncharacterized protein LOC109019461 OS=Juglans regia OX=51240 GN=LOC109019461 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.7e-04
Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = 0


Query: 13  ILLLLLIPSGFTVNDTAASASCNSSHSKKCHL-VRDDVGDYEFMMESEMGWMLSINYDKY 72
           +LLLL++ S  T    A ++S    +  +  L  +  + + E + +SE+  ML    D Y
Sbjct: 39  VLLLLILFSLHTTRWGATASSIQLDNGTRTALDYQGRMEEPELLFDSEISRML----DDY 98

Query: 73  KSPP--TRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC 118
            +    T+  NK  V  DC RPPRY+SCL  K  +  Q+KC  Y RGC
Sbjct: 99  PTVTGGTKSPNKPAV-SDCERPPRYKSCLHDKTGSKTQQKCETYTRGC 141

The following BLAST results are available for this feature:

BLAST of CsaV3_3G020880 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57776.1	6.5e-61	100.00	hypothetical protein Csa_3G298050 [Cucumis sativus]	[more]
XP_022143304.1	2.6e-09	39.66	uncharacterized protein LOC111013208 [Momordica charantia]	[more]
KGN53798.1	1.7e-08	40.52	hypothetical protein Csa_4G130630 [Cucumis sativus]	[more]
KGN53800.1	4.1e-07	40.71	hypothetical protein Csa_4G131140 [Cucumis sativus]	[more]
KGN57781.1	2.3e-05	35.65	hypothetical protein Csa_3G298580 [Cucumis sativus]	[more]

BLAST of CsaV3_3G020880 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G020880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G020880 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LCI8\|A0A0A0LCI8_CUCSA	4.3e-61	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298050 PE=4 SV=1	[more]
tr\|A0A0A0KW62\|A0A0A0KW62_CUCSA	1.1e-08	40.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1	[more]
tr\|A0A0A0KVZ2\|A0A0A0KVZ2_CUCSA	2.7e-07	40.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1	[more]
tr\|A0A0A0LCJ4\|A0A0A0LCJ4_CUCSA	1.5e-05	35.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1	[more]
tr\|A0A2I4HMA1\|A0A2I4HMA1_9ROSI	3.7e-04	35.19	uncharacterized protein LOC109019461 OS=Juglans regia OX=51240 GN=LOC109019461 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G020880.1	CsaV3_3G020880.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G020880	CSPI03G21060	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G020880	Carg07465	Silver-seed gourd	carcucB0801
CsaV3_3G020880	Cla013230	Watermelon (97103) v1	cucwmB245
CsaV3_3G020880	MELO3C020210	Melon (DHL92) v3.5.1	cucmeB249
CsaV3_3G020880	ClCG05G011600	Watermelon (Charleston Gray)	cucwcgB230
CsaV3_3G020880	Lsi05G003670	Bottle gourd (USVL1VR-Ls)	cuclsiB225
CsaV3_3G020880	MELO3C020210.2	Melon (DHL92) v3.6.1	cucmedB247
CsaV3_3G020880	Bhi01G001476	Wax gourd	cucwgoB305

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G020880	Silver-seed gourd	carcucB0517
CsaV3_3G020880	Silver-seed gourd	carcucB0518
CsaV3_3G020880	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G020880	Cucurbita maxima (Rimu)	cmacucB0281
CsaV3_3G020880	Cucurbita maxima (Rimu)	cmacucB0547
CsaV3_3G020880	Cucurbita moschata (Rifu)	cmocucB0272
CsaV3_3G020880	Cucurbita moschata (Rifu)	cmocucB0532
CsaV3_3G020880	Cucurbita pepo (Zucchini)	cpecucB0686
CsaV3_3G020880	Cucurbita pepo (Zucchini)	cpecucB0749
CsaV3_3G020880	Bottle gourd (USVL1VR-Ls)	cuclsiB231
CsaV3_3G020880	Watermelon (Charleston Gray)	cucwcgB241
CsaV3_3G020880	Watermelon (97103) v1	cucwmB254
CsaV3_3G020880	Watermelon (97103) v2	cucwmbB212
CsaV3_3G020880	Watermelon (97103) v2	cucwmbB220
CsaV3_3G020880	Wax gourd	cucwgoB274
CsaV3_3G020880	Wax gourd	cucwgoB304