Carg07465 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07465
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_019 : 998823 .. 999279 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAGCGGCGGTGATCATACCTGCCGCCATGGCGATCATGATTCTACTGCTCAACCCAACTACTTCCGATGCTCTTACATCTTTCAAACCACTCAACAATGACACTTCCGGTAAGCATAAACAATAAAAACTTGTAATTTACATAAAATTTGACCATAAATTATGAAACCCTTTATTTGTTTTTTGTGTTCGTGTTCAATTTGCGTGACCCAGCTGCCGGAAAGTACCTCATCGGAGACCAAGACATCGACTCAGAGTTTCTAATGGAATCGCACATCAGCCGGATCCTAGCAGGCTCCCAAAACTTCCAAACCAGCAAAACTAACGACGCCAACAAAGCTTCTGGCGGCGGCTGCGGGCGGCCGCCGCGTTATGACAGTTGCCTCGGCCAGAAATCAAACAATCCGCCGCCGGAAAATTGTGGGACCTTCAACCGCAATAATCCCTGTTAG

mRNA sequence

ATGGCTGCAGCGGCGGTGATCATACCTGCCGCCATGGCGATCATGATTCTACTGCTCAACCCAACTACTTCCGATGCTCTTACATCTTTCAAACCACTCAACAATGACACTTCCGCTGCCGGAAAGTACCTCATCGGAGACCAAGACATCGACTCAGAGTTTCTAATGGAATCGCACATCAGCCGGATCCTAGCAGGCTCCCAAAACTTCCAAACCAGCAAAACTAACGACGCCAACAAAGCTTCTGGCGGCGGCTGCGGGCGGCCGCCGCGTTATGACAGTTGCCTCGGCCAGAAATCAAACAATCCGCCGCCGGAAAATTGTGGGACCTTCAACCGCAATAATCCCTGTTAG

Coding sequence (CDS)

ATGGCTGCAGCGGCGGTGATCATACCTGCCGCCATGGCGATCATGATTCTACTGCTCAACCCAACTACTTCCGATGCTCTTACATCTTTCAAACCACTCAACAATGACACTTCCGCTGCCGGAAAGTACCTCATCGGAGACCAAGACATCGACTCAGAGTTTCTAATGGAATCGCACATCAGCCGGATCCTAGCAGGCTCCCAAAACTTCCAAACCAGCAAAACTAACGACGCCAACAAAGCTTCTGGCGGCGGCTGCGGGCGGCCGCCGCGTTATGACAGTTGCCTCGGCCAGAAATCAAACAATCCGCCGCCGGAAAATTGTGGGACCTTCAACCGCAATAATCCCTGTTAG

Protein sequence

MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDIDSEFLMESHISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC

Homology

[Close]

BLAST of Carg07465 vs. NCBI nr
Match: XP_022948338.1 (uncharacterized protein LOC111452044 [Cucurbita moschata])

HSP 1 Score: 229.9 bits (585), Expect = 4.3e-57
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60
           MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQD+DSEFLMESHI
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHI 60

Query: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC
Sbjct: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Carg07465 vs. NCBI nr
Match: XP_022998105.1 (uncharacterized protein LOC111492854 [Cucurbita maxima])

HSP 1 Score: 221.9 bits (564), Expect = 1.2e-54
Identity = 112/117 (95.73%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60
           MAAAAV+IPAAMAIMILLLNPT+SDALT+FKPLNNDTSAAGKYLIGDQDIDSEFLMESHI
Sbjct: 1   MAAAAVMIPAAMAIMILLLNPTSSDALTTFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60

Query: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           SRILAGSQ+FQTSKTNDANKASGGGC RPPRYDSCLGQKSNNPPPENCGTFNRNNPC
Sbjct: 61  SRILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Carg07465 vs. NCBI nr
Match: XP_023523220.1 (uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.3 bits (560), Expect = 3.4e-54
Identity = 111/117 (94.87%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60
           MA AA +IPAAMAIMILLLNP  SDALTSFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI
Sbjct: 1   MATAAAMIPAAMAIMILLLNPINSDALTSFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60

Query: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           SRILAGSQNFQTS TNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC
Sbjct: 61  SRILAGSQNFQTSNTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of Carg07465 vs. NCBI nr
Match: XP_011651393.1 (PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus] >KGN57780.1 hypothetical protein Csa_3G298570 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 3.4e-30
Identity = 73/117 (62.39%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 3   AAAVIIPAAMAIMILLLNPTT-SDALTSFKPLNNDTSAA-GKYLIGDQDIDSEFLMESHI 62
           A A++IPAAMA+M+++L PT    ALTSFKPLNN TS    KY++ ++DI S F+MESHI
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 63  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           SR+LA SQ+F+TS TN+A + S G C RPPRYDSCLG K N PPP+NC TFNR +PC
Sbjct: 64  SRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of Carg07465 vs. NCBI nr
Match: KGN57781.1 (hypothetical protein Csa_3G298580 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 2.9e-29
Identity = 72/119 (60.50%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 1   MAAAAVIIPAAMAIMILLLN-PTTSDALTSFKP-LNNDTSAAGKYLIGDQDIDSEFLMES 60
           M A+A++IPAA+  MILLL+ P++ DALT+F+P L+N +S  GK ++G++D++ EFLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           HISRILA S+N+QT+ T +ANKASGGGC RPPRYDSCLG+K N     NC  +NR NPC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNXXXXPNCSPYNRANPC 119

[Close]

BLAST of Carg07465 vs. TrEMBL
Match: tr|A0A0A0L711|A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.3e-30
Identity = 73/117 (62.39%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 3   AAAVIIPAAMAIMILLLNPTT-SDALTSFKPLNNDTSAA-GKYLIGDQDIDSEFLMESHI 62
           A A++IPAAMA+M+++L PT    ALTSFKPLNN TS    KY++ ++DI S F+MESHI
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 63  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           SR+LA SQ+F+TS TN+A + S G C RPPRYDSCLG K N PPP+NC TFNR +PC
Sbjct: 64  SRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of Carg07465 vs. TrEMBL
Match: tr|A0A0A0LCJ4|A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.9e-29
Identity = 72/119 (60.50%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 1   MAAAAVIIPAAMAIMILLLN-PTTSDALTSFKP-LNNDTSAAGKYLIGDQDIDSEFLMES 60
           M A+A++IPAA+  MILLL+ P++ DALT+F+P L+N +S  GK ++G++D++ EFLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           HISRILA S+N+QT+ T +ANKASGGGC RPPRYDSCLG+K N     NC  +NR NPC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNXXXXPNCSPYNRANPC 119

[Close]

BLAST of Carg07465 vs. TrEMBL
Match: tr|A0A0A0L9X5|A0A0A0L9X5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298070 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-20
Identity = 64/117 (54.70%), Postives = 79/117 (67.52%), Query Frame = 0


Query: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60
           MAAA + I   +AI+ LLL     DA  + KP+ N +S  GK LIG  DID++FLMESH+
Sbjct: 1   MAAATLSIRTTLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLIG--DIDTDFLMESHV 60

Query: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
           SRILA    F+T +T +AN AS   C RPPRYDSCLG+  +NPP ENC  +NR NPC
Sbjct: 61  SRILA-ELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

[Close]

BLAST of Carg07465 vs. TrEMBL
Match: tr|A0A0A0KVZ2|A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-14
Identity = 55/122 (45.08%), Postives = 69/122 (56.56%), Query Frame = 0


Query: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKY-----LIGDQDIDSEFL 60
           MA    I   A+ I+ LL NPT  +         N+T++   Y     L+GD+ +DSEFL
Sbjct: 1   MATTFSIPTMAILILTLLFNPTRCNTTV------NETTSEWCYGSENCLVGDESLDSEFL 60

Query: 61  MESHISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNN 118
           ME+  SR+L   QN QT  T D N+ S   CGRPPRYDSC G++   P PENC   NR N
Sbjct: 61  METETSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRAN 116

[Close]

BLAST of Carg07465 vs. TrEMBL
Match: tr|A0A0A0KW62|A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.3e-13
Identity = 56/119 (47.06%), Postives = 67/119 (56.30%), Query Frame = 0


Query: 1   MAAAAVIIPAAMAIMILLLNPTTSDA-LTSFKPLNNDTSAAGKYLIGDQDIDSEFLMESH 60
           MAA   +   A  I ILLLNP  S+A +   +    D++     L+GD +  SEFLM + 
Sbjct: 9   MAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTE 68

Query: 61  ISRILAGS-QNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 118
            S +L      FQT K NDANK S   C RPPRYDSCLG K + P PE C T NR NPC
Sbjct: 69  SSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

The following BLAST results are available for this feature:

BLAST of Carg07465 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948338.1	4.3e-57	99.15	uncharacterized protein LOC111452044 [Cucurbita moschata]	[more]
XP_022998105.1	1.2e-54	95.73	uncharacterized protein LOC111492854 [Cucurbita maxima]	[more]
XP_023523220.1	3.4e-54	94.87	uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo]	[more]
XP_011651393.1	3.4e-30	62.39	PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus] >KGN57780.1 hy...	[more]
KGN57781.1	2.9e-29	60.50	hypothetical protein Csa_3G298580 [Cucumis sativus]	[more]

BLAST of Carg07465 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg07465 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07465 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L711\|A0A0A0L711_CUCSA	2.3e-30	62.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1	[more]
tr\|A0A0A0LCJ4\|A0A0A0LCJ4_CUCSA	1.9e-29	60.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1	[more]
tr\|A0A0A0L9X5\|A0A0A0L9X5_CUCSA	2.1e-20	54.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298070 PE=4 SV=1	[more]
tr\|A0A0A0KVZ2\|A0A0A0KVZ2_CUCSA	1.0e-14	45.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1	[more]
tr\|A0A0A0KW62\|A0A0A0KW62_CUCSA	4.3e-13	47.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07465-RA	Carg07465-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..80

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07465	Csa3G298050	Cucumber (Chinese Long) v2	carcuB0780
Carg07465	CSPI03G21060	Wild cucumber (PI 183967)	carcpiB0798
Carg07465	CsaV3_3G020880	Cucumber (Chinese Long) v3	carcucB0801

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07465	Wax gourd	carwgoB0896
Carg07465	Silver-seed gourd	carcarB471
Carg07465	Cucumber (Gy14) v2	carcgybB0757
Carg07465	Cucumber (Gy14) v1	carcgyB0854
Carg07465	Cucurbita maxima (Rimu)	carcmaB1057
Carg07465	Cucurbita maxima (Rimu)	carcmaB1059
Carg07465	Cucurbita moschata (Rifu)	carcmoB1031
Carg07465	Cucurbita moschata (Rifu)	carcmoB1033
Carg07465	Cucurbita pepo (Zucchini)	carcpeB1072
Carg07465	Cucurbita pepo (Zucchini)	carcpeB1073
Carg07465	Bottle gourd (USVL1VR-Ls)	carlsiB700
Carg07465	Melon (DHL92) v3.5.1	carmeB0756
Carg07465	Melon (DHL92) v3.5.1	carmeB0757
Carg07465	Melon (DHL92) v3.6.1	carmedB0771
Carg07465	Watermelon (Charleston Gray)	carwcgB0739
Carg07465	Watermelon (97103) v1	carwmB0760
Carg07465	Watermelon (97103) v2	carwmbB0795