Csa3G298050 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G298050
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 16991489 .. 16992176 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAATCAATAAATAAAATTGGATCCAAGCATCAAAGTCCCCCAACTACCAACGGCCCCCCAAAATTCAATATCTTCCATAGTTTCATTAATCTTCATTGTTATCTCTTCACCATTTCATCACTCGTTCACCTCTCCATTGGACTTTCTTCTTCAAACACCATGGCTGCACTGTCCACACCATCCATCGGGACCATCATTCTCCTTCTCCTCCTCATTCCTTCCGGCTTCACCGTTAATGACACTGCTGCCTCCGCCTCTTGCAACAGCAGCCACTCAAAGAAATGCCACCTTGTGAGAGACGATGTCGGAGATTACGAATTCATGATGGAATCGGAGATGGGATGGATGCTGTCAATTAACTACGATAAATACAAATCACCACCAACCAGAATAGCCAACAAGCAGGTAGTGAAAGACGACTGTGGCCGACCACCGCGGTACGAAAGTTGTCTTGGCAGGAAAAGGGACACGCTGATACAGGAAAAATGTGCTGTCTACAAACGAGGCTGTTAATGAAATGGAAAAGAGTAGAATAAAAGGAAGATGGATTTGTGGTTAACATTTGTGGGATGTGTTGTTAAGTGGATGTCTAAGTTAAATTAATTTGGTTCGTTTGTTGGAAGGTGGATTTAGTTTTGGTGTAGATGTTTGTGAATCAATTAATTTGAAAAATAACAATGTCTTTT

mRNA sequence

ATGGCTGCACTGTCCACACCATCCATCGGGACCATCATTCTCCTTCTCCTCCTCATTCCTTCCGGCTTCACCGTTAATGACACTGCTGCCTCCGCCTCTTGCAACAGCAGCCACTCAAAGAAATGCCACCTTGTGAGAGACGATGTCGGAGATTACGAATTCATGATGGAATCGGAGATGGGATGGATGCTGTCAATTAACTACGATAAATACAAATCACCACCAACCAGAATAGCCAACAAGCAGGTAGTGAAAGACGACTGTGGCCGACCACCGCGGTACGAAAGTTGTCTTGGCAGGAAAAGGGACACGCTGATACAGGAAAAATGTGCTGTCTACAAACGAGGCTGTTAA

Coding sequence (CDS)

ATGGCTGCACTGTCCACACCATCCATCGGGACCATCATTCTCCTTCTCCTCCTCATTCCTTCCGGCTTCACCGTTAATGACACTGCTGCCTCCGCCTCTTGCAACAGCAGCCACTCAAAGAAATGCCACCTTGTGAGAGACGATGTCGGAGATTACGAATTCATGATGGAATCGGAGATGGGATGGATGCTGTCAATTAACTACGATAAATACAAATCACCACCAACCAGAATAGCCAACAAGCAGGTAGTGAAAGACGACTGTGGCCGACCACCGCGGTACGAAAGTTGTCTTGGCAGGAAAAGGGACACGCTGATACAGGAAAAATGTGCTGTCTACAAACGAGGCTGTTAA

Protein sequence

MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEMGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC*

Homology

[Close]

BLAST of Csa3G298050 vs. TrEMBL
Match: A0A0A0LCI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298050 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 8.0e-62
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1


Query: 1   MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM 60
           MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM
Sbjct: 1   MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM 60

Query: 61  GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC 118
           GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC
Sbjct: 61  GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC 117

[Close]

BLAST of Csa3G298050 vs. TrEMBL
Match: A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-09
Identity = 47/116 (40.52%), Postives = 64/116 (55.17%), Query Frame = 1


Query: 2   AALSTPSIGTIILLLLLIP--SGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESE 61
           A L+ PS+  +I +LLL P  S   +NDT  S  C+S+  + C LV D     EF+M +E
Sbjct: 11  ATLTMPSMAFLITILLLNPIISNAGMNDTE-SKWCDSTGLENC-LVGDLNSHSEFLMLTE 70

Query: 62  MGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 116
              ML   +  +++P    ANK+ V D C RPPRY+SCLG KR     E C+   R
Sbjct: 71  SSGMLVDQFLTFQTPKANDANKESVPD-CSRPPRYDSCLGSKRSIPNPEPCSTLNR 123

[Close]

BLAST of Csa3G298050 vs. TrEMBL
Match: A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 1


Query: 5   STPSIGTIILLLLLIPS--GFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEMGW 64
           S P++  +IL LL  P+    TVN+T +     S +     LV D+  D EF+ME+E   
Sbjct: 6   SIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENC----LVGDESLDSEFLMETETSR 65

Query: 65  MLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 116
           ML +++   ++P T   N+Q V + CGRPPRY+SC G +R     E C V  R
Sbjct: 66  ML-LDFQNLQTPGTIDPNRQSVAE-CGRPPRYDSCTGEERQIPNPENCDVRNR 112

[Close]

BLAST of Csa3G298050 vs. TrEMBL
Match: A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.1e-06
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 1


Query: 2   AALSTPSIGTIILLLLLIPSGFTVNDTAASASCN-SSHSKKCHLVRDDVGDYEFMMESEM 61
           +AL  P+    ++LLL IPS      T      N SS+  K  +  +D+ + EF+MES +
Sbjct: 4   SALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDM-ELEFLMESHI 63

Query: 62  GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 116
             +L+ + + Y++  T  ANK      C RPPRY+SCLG+KR+      C+ Y R
Sbjct: 64  SRILASSKN-YQTASTTNANK-ASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNR 115

[Close]

BLAST of Csa3G298050 vs. NCBI nr
Match: gi|700202643|gb|KGN57776.1| (hypothetical protein Csa_3G298050 [Cucumis sativus])

HSP 1 Score: 244.2 bits (622), Expect = 1.1e-61
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1


Query: 1   MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM 60
           MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM
Sbjct: 1   MAALSTPSIGTIILLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEM 60

Query: 61  GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC 118
           GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC
Sbjct: 61  GWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKRGC 117

[Close]

BLAST of Csa3G298050 vs. NCBI nr
Match: gi|700198640|gb|KGN53798.1| (hypothetical protein Csa_4G130630 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 5.0e-09
Identity = 47/116 (40.52%), Postives = 64/116 (55.17%), Query Frame = 1


Query: 2   AALSTPSIGTIILLLLLIP--SGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESE 61
           A L+ PS+  +I +LLL P  S   +NDT  S  C+S+  + C LV D     EF+M +E
Sbjct: 11  ATLTMPSMAFLITILLLNPIISNAGMNDTE-SKWCDSTGLENC-LVGDLNSHSEFLMLTE 70

Query: 62  MGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 116
              ML   +  +++P    ANK+ V D C RPPRY+SCLG KR     E C+   R
Sbjct: 71  SSGMLVDQFLTFQTPKANDANKESVPD-CSRPPRYDSCLGSKRSIPNPEPCSTLNR 123

[Close]

BLAST of Csa3G298050 vs. NCBI nr
Match: gi|700198642|gb|KGN53800.1| (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 1


Query: 5   STPSIGTIILLLLLIPS--GFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESEMGW 64
           S P++  +IL LL  P+    TVN+T +     S +     LV D+  D EF+ME+E   
Sbjct: 6   SIPTMAILILTLLFNPTRCNTTVNETTSEWCYGSENC----LVGDESLDSEFLMETETSR 65

Query: 65  MLSINYDKYKSPPTRIANKQVVKDDCGRPPRYESCLGRKRDTLIQEKCAVYKR 116
           ML +++   ++P T   N+Q V + CGRPPRY+SC G +R     E C V  R
Sbjct: 66  ML-LDFQNLQTPGTIDPNRQSVAE-CGRPPRYDSCTGEERQIPNPENCDVRNR 112

The following BLAST results are available for this feature:

BLAST of Csa3G298050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCI8_CUCSA	8.0e-62	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298050 PE=4 SV=1	[more]
A0A0A0KW62_CUCSA	3.5e-09	40.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1	[more]
A0A0A0KVZ2_CUCSA	1.1e-07	38.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1	[more]
A0A0A0LCJ4_CUCSA	8.1e-06	35.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1	[more]

BLAST of Csa3G298050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202643\|gb\|KGN57776.1\|	1.1e-61	100.00	hypothetical protein Csa_3G298050 [Cucumis sativus]	[more]
gi\|700198640\|gb\|KGN53798.1\|	5.0e-09	40.52	hypothetical protein Csa_4G130630 [Cucumis sativus]	[more]
gi\|700198642\|gb\|KGN53800.1\|	1.6e-07	38.05	hypothetical protein Csa_4G131140 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU113476	cucumber EST collection version 3.0	transcribed_cluster
CU152032	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G298050.1	Csa3G298050.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU113476	CU113476	transcribed_cluster
CU152032	CU152032	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G298050	Cla013230	Watermelon (97103) v1	cuwmB239
Csa3G298050	MELO3C020210	Melon (DHL92) v3.5.1	cumeB246
Csa3G298050	ClCG05G011600	Watermelon (Charleston Gray)	cuwcgB226
Csa3G298050	Lsi05G003670	Bottle gourd (USVL1VR-Ls)	culsiB206
Csa3G298050	MELO3C020210.2	Melon (DHL92) v3.6.1	cumedB239
Csa3G298050	CSPI03G21060	Wild cucumber (PI 183967)	cpicuB120
Csa3G298050	Carg07465	Silver-seed gourd	carcuB0780

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G298050	Bottle gourd (USVL1VR-Ls)	culsiB212
Csa3G298050	Cucumber (Gy14) v2	cgybcuB109
Csa3G298050	Silver-seed gourd	carcuB0513
Csa3G298050	Watermelon (97103) v2	cuwmbB209
Csa3G298050	Watermelon (97103) v2	cuwmbB218
Csa3G298050	Wax gourd	cuwgoB271
Csa3G298050	Wax gourd	cuwgoB300
Csa3G298050	Cucurbita maxima (Rimu)	cmacuB242
Csa3G298050	Cucurbita maxima (Rimu)	cmacuB455
Csa3G298050	Cucurbita moschata (Rifu)	cmocuB229
Csa3G298050	Cucurbita moschata (Rifu)	cmocuB442
Csa3G298050	Watermelon (Charleston Gray)	cuwcgB233
Csa3G298050	Watermelon (97103) v1	cuwmB245
Csa3G298050	Cucurbita pepo (Zucchini)	cpecuB547
Csa3G298050	Cucurbita pepo (Zucchini)	cpecuB600