ClCG05G011600 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G011600
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 13978565 .. 13979127 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCACGGGCCACACCATCAGTGGCAACCATCATTCTTCTTCTCCTCCTCCTCATTCCTACCGGCTCCACCGTCAACAACACCGCTGCCTCCGCCTCCTGCAACGGCAGCCACAGGGAGAAATGCCACCTCAGCGGAGAAGAGATCGCCAATTCCGAATTCTTGATGGAATCGGAGATCGGACGGATGCTGTTGAACTTCAATAAATTCCAAGGTCCCCAAACCCAAACCCCCAACAAACAGGCGGTGGCGTCCTGTGGCCGACCACCGCGGTACGACAGTTGTCTGGGCCAGAAGAGGCAAACGCCGCCACAGGAAAAATGCAACATCTACAAACGAGTGCCTTGTGGACAATGAAATGGGAAAAAGAAAAGAAAAGGAAGATCAATTTGTGGTTATAATTTGTGGGATATGTTGTTAAGGGGTGAATTTGGTTGTCGTGTTGTTCCTGAATGGAAATGAAAATGTCTGGTGTGTTTAATTATAAATCAATTTTGTACTCTCTTATGTTTTTTTTTTCTTTTTTTAGGAATTTTACTCTCTATGTTTTCTTGCTGTGA

mRNA sequence

ATGGCAGCACGGGCCACACCATCAGTGGCAACCATCATTCTTCTTCTCCTCCTCCTCATTCCTACCGGCTCCACCGTCAACAACACCGCTGCCTCCGCCTCCTGCAACGGCAGCCACAGGGAGAAATGCCACCTCAGCGGAGAAGAGATCGCCAATTCCGAATTCTTGATGGAATCGGAGATCGGACGGATGCTGTTGAACTTCAATAAATTCCAAGGTCCCCAAACCCAAACCCCCAACAAACAGGCGGTGGCGTCCTGTGGCCGACCACCGCGGAATTTTACTCTCTATGTTTTCTTGCTGTGA

Coding sequence (CDS)

ATGGCAGCACGGGCCACACCATCAGTGGCAACCATCATTCTTCTTCTCCTCCTCCTCATTCCTACCGGCTCCACCGTCAACAACACCGCTGCCTCCGCCTCCTGCAACGGCAGCCACAGGGAGAAATGCCACCTCAGCGGAGAAGAGATCGCCAATTCCGAATTCTTGATGGAATCGGAGATCGGACGGATGCTGTTGAACTTCAATAAATTCCAAGGTCCCCAAACCCAAACCCCCAACAAACAGGCGGTGGCGTCCTGTGGCCGACCACCGCGGAATTTTACTCTCTATGTTTTCTTGCTGTGA

Protein sequence

MAARATPSVATIILLLLLLIPTGSTVNNTAASASCNGSHREKCHLSGEEIANSEFLMESEIGRMLLNFNKFQGPQTQTPNKQAVASCGRPPRNFTLYVFLL
Homology
[Close]
BLAST of ClCG05G011600 vs. TrEMBL
Match: A0A0A0LCI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298050 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.5e-21
Identity = 57/94 (60.64%), Postives = 74/94 (78.72%), Query Frame = 1 

Query: 1  MAARATPSVATIILLLLLLIPTGSTVNNTAASASCNGSHREKCHLSGEEIANSEFLMESE 60
          MAA +TPS+ TII LLLLLIP+G TVN+TAASASCN SH +KCHL  +++ + EF+MESE
Sbjct: 1  MAALSTPSIGTII-LLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESE 60

Query: 61 IGRML-LNFNKFQGPQTQTPNKQAVA-SCGRPPR 93
          +G ML +N++K++ P T+  NKQ V   CGRPPR
Sbjct: 61 MGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPR 93

[Close]
BLAST of ClCG05G011600 vs. TrEMBL
Match: A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.3e-11
Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = 1 

Query: 7  PSVATIILLLLLLIPTGSTVNNTAASASCNGSHREKCHLSGEEIANSEFLMESEIGRMLL 66
          P++A +IL LL      +T  N   S  C GS  E C L G+E  +SEFLME+E  RMLL
Sbjct: 8  PTMAILILTLLFNPTRCNTTVNETTSEWCYGS--ENC-LVGDESLDSEFLMETETSRMLL 67

Query: 67 NFNKFQGPQTQTPNKQAVASCGRPPR 93
          +F   Q P T  PN+Q+VA CGRPPR
Sbjct: 68 DFQNLQTPGTIDPNRQSVAECGRPPR 90

[Close]
BLAST of ClCG05G011600 vs. NCBI nr
Match: gi|700202643|gb|KGN57776.1| (hypothetical protein Csa_3G298050 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-21
Identity = 57/94 (60.64%), Postives = 74/94 (78.72%), Query Frame = 1 

Query: 1  MAARATPSVATIILLLLLLIPTGSTVNNTAASASCNGSHREKCHLSGEEIANSEFLMESE 60
          MAA +TPS+ TII LLLLLIP+G TVN+TAASASCN SH +KCHL  +++ + EF+MESE
Sbjct: 1  MAALSTPSIGTII-LLLLLIPSGFTVNDTAASASCNSSHSKKCHLVRDDVGDYEFMMESE 60

Query: 61 IGRML-LNFNKFQGPQTQTPNKQAVA-SCGRPPR 93
          +G ML +N++K++ P T+  NKQ V   CGRPPR
Sbjct: 61 MGWMLSINYDKYKSPPTRIANKQVVKDDCGRPPR 93

[Close]
BLAST of ClCG05G011600 vs. NCBI nr
Match: gi|700198642|gb|KGN53800.1| (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-10
Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = 1 

Query: 7  PSVATIILLLLLLIPTGSTVNNTAASASCNGSHREKCHLSGEEIANSEFLMESEIGRMLL 66
          P++A +IL LL      +T  N   S  C GS  E C L G+E  +SEFLME+E  RMLL
Sbjct: 8  PTMAILILTLLFNPTRCNTTVNETTSEWCYGS--ENC-LVGDESLDSEFLMETETSRMLL 67

Query: 67 NFNKFQGPQTQTPNKQAVASCGRPPR 93
          +F   Q P T  PN+Q+VA CGRPPR
Sbjct: 68 DFQNLQTPGTIDPNRQSVAECGRPPR 90

The following BLAST results are available for this feature:
BLAST of ClCG05G011600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCI8_CUCSA1.5e-2160.64Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298050 PE=4 SV=1[more]
A0A0A0KVZ2_CUCSA9.3e-1150.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1[more]
BLAST of ClCG05G011600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202643|gb|KGN57776.1|2.2e-2160.64hypothetical protein Csa_3G298050 [Cucumis sativus][more]
gi|700198642|gb|KGN53800.1|1.3e-1050.00hypothetical protein Csa_4G131140 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G011600.1ClCG05G011600.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..35
score: