MELO3C020218.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020218.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	10 kDa chaperonin
Location	chr06 : 16418223 .. 16418989 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGTGATAGATCACCAAACAGAGACGCCCATAGTTTTAGTCTTCCTCCTTTCCCATAAAACCCAATCGTATCTGTCCGCCTAAAAAGAATCAAGGACGTCAATGGGTGCGTCGGCGACGATGATACCGGCCGCCGTAGTGACGATGATCCTGCTGCTCAATATTCCAAGTAGTTGCGAAGCTCTTACAACTTTCGAACCACTTCTCAGCAACCACACTTCATGTAAGTTTTGAAAAACTAGACTAGAGTCTTCGTTTTTGTTTATAATAATTCTTTTTATGCTTTGATAATTGTTGATTTTGGAGCGGTTTGACTGAAGCAGATGGCGAACAATTGATGGTCGGAGAAGAAGATATGGACATGGAATTTATAATGGAGTCACACATAAGCCGGATTCTAGCGTCATCTCAAAACTTCCAAACAACCTCCACCGTAGACGCTAACAAAGCTTCTGGAGGCGGTTGTGGCCGACCACCGCGCTACGACAGTTGTCTCGGCCAGAAAAGAAATAATCCCCCGCCCCCAAACTGTGGCACCTACAATCGCGCAAATCCCTGTTAGATAATTTTAATCTTCACCTTCTCTATTATTCACCTTTTTTTTTTGTTCTTTCTCTTACCATTTATGATTATACAATTTCTCACTCAAATCTTTACCCTTAAATCTTAATAATGCAAAATATTGTACTTCCTCAATTCTCTCATCTACATTAAAAATTGGGTTTCCACTTTCCAGATAAAAATATAGTCATATATATATATATATA

mRNA sequence

AAGGTGATAGATCACCAAACAGAGACGCCCATAGTTTTAGTCTTCCTCCTTTCCCATAAAACCCAATCGTATCTGTCCGCCTAAAAAGAATCAAGGACGTCAATGGGTGCGTCGGCGACGATGATACCGGCCGCCGTAGTGACGATGATCCTGCTGCTCAATATTCCAAGTAGTTGCGAAGCTCTTACAACTTTCGAACCACTTCTCAGCAACCACACTTCATATGGCGAACAATTGATGGTCGGAGAAGAAGATATGGACATGGAATTTATAATGGAGTCACACATAAGCCGGATTCTAGCGTCATCTCAAAACTTCCAAACAACCTCCACCGTAGACGCTAACAAAGCTTCTGGAGGCGGTTGTGGCCGACCACCGCGCTACGACAGTTGTCTCGGCCAGAAAAGAAATAATCCCCCGCCCCCAAACTGTGGCACCTACAATCGCGCAAATCCCTGTTAGATAATTTTAATCTTCACCTTCTCTATTATTCACCTTTTTTTTTTGTTCTTTCTCTTACCATTTATGATTATACAATTTCTCACTCAAATCTTTACCCTTAAATCTTAATAATGCAAAATATTGTACTTCCTCAATTCTCTCATCTACATTAAAAATTGGGTTTCCACTTTCCAGATAAAAATATAGTCATATATATATATATATA

Coding sequence (CDS)

ATGGGTGCGTCGGCGACGATGATACCGGCCGCCGTAGTGACGATGATCCTGCTGCTCAATATTCCAAGTAGTTGCGAAGCTCTTACAACTTTCGAACCACTTCTCAGCAACCACACTTCATATGGCGAACAATTGATGGTCGGAGAAGAAGATATGGACATGGAATTTATAATGGAGTCACACATAAGCCGGATTCTAGCGTCATCTCAAAACTTCCAAACAACCTCCACCGTAGACGCTAACAAAGCTTCTGGAGGCGGTTGTGGCCGACCACCGCGCTACGACAGTTGTCTCGGCCAGAAAAGAAATAATCCCCCGCCCCCAAACTGTGGCACCTACAATCGCGCAAATCCCTGTTAG

Protein sequence

MGASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMESHISRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC

Homology

[Close]

BLAST of MELO3C020218.2 vs. NCBI nr
Match: KGN57781.1 (hypothetical protein Csa_3G298580 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 7.7e-46
Identity = 95/119 (79.83%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MGASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMES 60
           MGASA MIPAAVVTMILLL+IPSSC+ALTTF+PLLSNH+SYG +LM+GEEDM++EF+MES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HISRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 120
           HISRILASS+N+QT ST +ANKASGGGC RPPRYDSCLG+KRN    PNC  YNRANPC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNXXXXPNCSPYNRANPC 119

[Close]

BLAST of MELO3C020218.2 vs. NCBI nr
Match: XP_022948338.1 (uncharacterized protein LOC111452044 [Cucurbita moschata])

HSP 1 Score: 162.9 bits (411), Expect = 6.6e-37
Identity = 82/119 (68.91%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 1   MGASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMES 60
           M A+A +IPAA+  MILLLN P++ +ALT+F+P L+N TS   + ++G++D+D EF+MES
Sbjct: 1   MAAAAVIIPAAMAIMILLLN-PTTSDALTSFKP-LNNDTSAAGKYLIGDQDLDSEFLMES 60

Query: 61  HISRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 120
           HISRILA SQNFQT+ T DANKASGGGCGRPPRYDSCLGQK NNPPP NCGT+NR NPC
Sbjct: 61  HISRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of MELO3C020218.2 vs. NCBI nr
Match: XP_022998105.1 (uncharacterized protein LOC111492854 [Cucurbita maxima])

HSP 1 Score: 161.8 bits (408), Expect = 1.5e-36
Identity = 83/119 (69.75%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 1   MGASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMES 60
           M A+A MIPAA+  MILLLN P+S +ALTTF+P L+N TS   + ++G++D+D EF+MES
Sbjct: 1   MAAAAVMIPAAMAIMILLLN-PTSSDALTTFKP-LNNDTSAAGKYLIGDQDIDSEFLMES 60

Query: 61  HISRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 120
           HISRILA SQ+FQT+ T DANKASGGGC RPPRYDSCLGQK NNPPP NCGT+NR NPC
Sbjct: 61  HISRILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of MELO3C020218.2 vs. NCBI nr
Match: XP_023523220.1 (uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.8 bits (408), Expect = 1.5e-36
Identity = 82/119 (68.91%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 1   MGASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMES 60
           M  +A MIPAA+  MILLLN P + +ALT+F+P L+N TS   + ++G++D+D EF+MES
Sbjct: 1   MATAAAMIPAAMAIMILLLN-PINSDALTSFKP-LNNDTSAAGKYLIGDQDIDSEFLMES 60

Query: 61  HISRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 120
           HISRILA SQNFQT++T DANKASGGGCGRPPRYDSCLGQK NNPPP NCGT+NR NPC
Sbjct: 61  HISRILAGSQNFQTSNTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNPC 117

[Close]

BLAST of MELO3C020218.2 vs. NCBI nr
Match: XP_011651393.1 (PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus] >KGN57780.1 hypothetical protein Csa_3G298570 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 1.8e-26
Identity = 71/119 (59.66%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 3   ASATMIPAAVVTMILLLNIPSSC-EALTTFEPLLSNHTSYG-EQLMVGEEDMDMEFIMES 62
           A A MIPAA+  M+++L IP++C  ALT+F+P L+NHTS G  + MV EED+   F+MES
Sbjct: 4   APALMIPAAMAMMLMML-IPTACGGALTSFKP-LNNHTSGGLVKYMVEEEDIKSNFVMES 63

Query: 63  HISRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 120
           HISR+LA SQ+F+T+ST +A + S G C RPPRYDSCLG KRN PPP NC T+NR +PC
Sbjct: 64  HISRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of MELO3C020218.2 vs. TrEMBL
Match: tr|A0A0A0LCJ4|A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 5.1e-46
Identity = 95/119 (79.83%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MGASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMES 60
           MGASA MIPAAVVTMILLL+IPSSC+ALTTF+PLLSNH+SYG +LM+GEEDM++EF+MES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HISRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 120
           HISRILASS+N+QT ST +ANKASGGGC RPPRYDSCLG+KRN    PNC  YNRANPC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNXXXXPNCSPYNRANPC 119

[Close]

BLAST of MELO3C020218.2 vs. TrEMBL
Match: tr|A0A0A0L711|A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-26
Identity = 71/119 (59.66%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 3   ASATMIPAAVVTMILLLNIPSSC-EALTTFEPLLSNHTSYG-EQLMVGEEDMDMEFIMES 62
           A A MIPAA+  M+++L IP++C  ALT+F+P L+NHTS G  + MV EED+   F+MES
Sbjct: 4   APALMIPAAMAMMLMML-IPTACGGALTSFKP-LNNHTSGGLVKYMVEEEDIKSNFVMES 63

Query: 63  HISRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 120
           HISR+LA SQ+F+T+ST +A + S G C RPPRYDSCLG KRN PPP NC T+NR +PC
Sbjct: 64  HISRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of MELO3C020218.2 vs. TrEMBL
Match: tr|A0A0A0L9X5|A0A0A0L9X5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298070 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-17
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 0


Query: 3   ASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMESHI 62
           A+AT+     + ++ LL +   C+A    +P+ +  +  G++L+    D+D +F+MESH+
Sbjct: 2   AAATLSIRTTLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLI---GDIDTDFLMESHV 61

Query: 63  SRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 120
           SRILA  + F+T  T +AN AS   C RPPRYDSCLG+ R+NPP  NC  YNRANPC
Sbjct: 62  SRILAELR-FETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

[Close]

BLAST of MELO3C020218.2 vs. TrEMBL
Match: tr|A0A0A0KVZ2|A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.5e-17
Identity = 52/117 (44.44%), Postives = 67/117 (57.26%), Query Frame = 0


Query: 3   ASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMESHI 62
           A+   IP   + ++ LL  P+ C   TT     S      E  +VG+E +D EF+ME+  
Sbjct: 2   ATTFSIPTMAILILTLLFNPTRCN--TTVNETTSEWCYGSENCLVGDESLDSEFLMETET 61

Query: 63  SRILASSQNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 120
           SR+L   QN QT  T+D N+ S   CGRPPRYDSC G++R  P P NC   NRANPC
Sbjct: 62  SRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of MELO3C020218.2 vs. TrEMBL
Match: tr|A0A0A0KW62|A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.9e-10
Identity = 51/120 (42.50%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 1   MGASATMIPAAVVTMILLLNIPSSCEALTTFEPLLSNHTSYGEQLMVGEEDMDMEFIMES 60
           M A+ TM   A +  ILLLN   S   +   E    + T   E  +VG+ +   EF+M +
Sbjct: 9   MAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGL-ENCLVGDLNSHSEFLMLT 68

Query: 61  HISRILASS-QNFQTTSTVDANKASGGGCGRPPRYDSCLGQKRNNPPPPNCGTYNRANPC 120
             S +L      FQT    DANK S   C RPPRYDSCLG KR+ P P  C T NR NPC
Sbjct: 69  ESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

The following BLAST results are available for this feature:

BLAST of MELO3C020218.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57781.1	7.7e-46	79.83	hypothetical protein Csa_3G298580 [Cucumis sativus]	[more]
XP_022948338.1	6.6e-37	68.91	uncharacterized protein LOC111452044 [Cucurbita moschata]	[more]
XP_022998105.1	1.5e-36	69.75	uncharacterized protein LOC111492854 [Cucurbita maxima]	[more]
XP_023523220.1	1.5e-36	68.91	uncharacterized protein LOC111787479 [Cucurbita pepo subsp. pepo]	[more]
XP_011651393.1	1.8e-26	59.66	PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus] >KGN57780.1 hy...	[more]

BLAST of MELO3C020218.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C020218.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C020218.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LCJ4\|A0A0A0LCJ4_CUCSA	5.1e-46	79.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1	[more]
tr\|A0A0A0L711\|A0A0A0L711_CUCSA	1.2e-26	59.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1	[more]
tr\|A0A0A0L9X5\|A0A0A0L9X5_CUCSA	2.2e-17	45.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298070 PE=4 SV=1	[more]
tr\|A0A0A0KVZ2\|A0A0A0KVZ2_CUCSA	6.5e-17	44.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1	[more]
tr\|A0A0A0KW62\|A0A0A0KW62_CUCSA	5.9e-10	42.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020218.2.1	MELO3C020218.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..119

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020218.2	Csa3G298070	Cucumber (Chinese Long) v2	cumedB239
MELO3C020218.2	CSPI03G21090	Wild cucumber (PI 183967)	cpimedB240
MELO3C020218.2	CmoCh01G003960	Cucurbita moschata (Rifu)	cmomedB483
MELO3C020218.2	Lsi05G003670	Bottle gourd (USVL1VR-Ls)	lsimedB406
MELO3C020218.2	CsGy3G020560	Cucumber (Gy14) v2	cgybmedB216
MELO3C020218.2	ClCG05G011610	Watermelon (Charleston Gray)	medwcgB431
MELO3C020218.2	Bhi01G001476	Wax gourd	medwgoB540
MELO3C020218.2	CsaV3_3G020900	Cucumber (Chinese Long) v3	cucmedB247

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020218.2	Silver-seed gourd	carmedB0489
MELO3C020218.2	Watermelon (97103) v2	medwmbB424
MELO3C020218.2	Watermelon (97103) v2	medwmbB437
MELO3C020218.2	Wax gourd	medwgoB546
MELO3C020218.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C020218.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C020218.2	Cucurbita moschata (Rifu)	cmomedB259
MELO3C020218.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C020218.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C020218.2	Cucurbita pepo (Zucchini)	cpemedB692
MELO3C020218.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C020218.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C020218.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C020218.2	Watermelon (97103) v1	medwmB448
MELO3C020218.2	Watermelon (97103) v1	medwmB462