ClCG05G011610 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G011610
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr05 : 14028458 .. 14029914 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAGCGGCGCTGATGATACCCACCGCTGTGACAATAATGATTCTGCTGCTGAATCCAACCGGTTGCGATGCTCTTACATCTTTCAAACCACTTCTCAACAACGACACTTCTCGTAAGTTTCGAAAACCTTTTGATATGGAATTTCTATGAATATATTTGGAATCAAAATTGTTTTAAAATTGCTAGATTTATTTATTTGTTTTTTTTGAAATGAAACTTCGTAAAAGCAAAGAAAAGCCCCCTCAATAGGGCACCGGGAACAGAAAAATCACTATGCTAGATTTTTTTTTTTTTTCTCTTCTTCTTGTTATTTATTTTGATAATTGTACTTTTTTATGATATACTTTTAAGGTTTAAAAATATTTAATATATTGGTAAATTTTTAATTTTGTGTCTAATTAATTCTTTAGAATTAAAAGTATTTGGTATATTAAAATGATTTCACTTTTAAATTTGTAAATACTAAAATAATTTCACTTTTAAATTTGTATCTATTAAGTTATTAATATATCAAAATTTTGAAGAAGATTAATTGGTCTACTGAGACATTGAATTAAAATTTGAGTCTAATAAAACTCTAAATATTTATTTATGTCATAGGTTTGTAGATTTTAAAAACATGTCAAATAATTTGATGTGACCTATGTAAGAAAGCAATATAAAAAATTTAGAGATGCATCATAAACAAAATTTTAAAGTTGGTTTTTTGTTTTAAAATATTAGAAAAGTATTAATAATACTTTATTAACTGTAATTTGGTCTTTGGTTCATTTTATTACTGTAGTTTCTTCTCAAATTTGTCCTATTGTTTTATATTAAATCAATTTGATGTTTATATTTTTAAAATATTTATTTTAGTCTTTCCACTTTTTAAAAGTGACAATTTTAATTCTTATTTATATAATTTTAACATTAGTATTTTTTAAGAAAATGTTAAAAATAAAAATTAAATAACTAATTAGATTCTCTAGACTTCAAAATTCAATTTAGTACTCCAAATGCTACTAACACATTTAACTAAAATAGTCCCTCTAAAATATTTAATTAAAATCTTCACTTTCTTAATGTACAAAACAAAGTCAAAAGTATGAAAATTAAAATAGAGTTTAAATCAAATTAATTGCACGAATAAAATAGACATAAAACAAAATTGTAACCCGAACCTTATAAAGAATGAAAACCCATTCTTGATTTTGGAGTGGTGTCACGCAGGTGCCGGAAAATACCTCGTCGGCGACCAAGATATGGAATCGGAGTTTCTGATGGAGTCCCACATCACCCGGATCTTAGCGTCCTCCCAAAACTTCCAAACCACCTCCACTACCGACGCTAACAAAGCTTCTGGCGGTGGTTGCGGCCGGCCGCCGCGATACGACAGTTGTCTCGGCCAGAAAAGAAATAACCCGCCGCCGGAAAACTGTGGCACCTTCAATCGCGTAAATCCCTGTTAG

mRNA sequence

ATGGCTGCAGCGGCGCTGATGATACCCACCGCTGTGACAATAATGATTCTGCTGCTGAATCCAACCGGTTGCGATGCTCTTACATCTTTCAAACCACTTCTCAACAACGACACTTCTCGTGCCGGAAAATACCTCGTCGGCGACCAAGATATGGAATCGGAGTTTCTGATGGAGTCCCACATCACCCGGATCTTAGCGTCCTCCCAAAACTTCCAAACCACCTCCACTACCGACGCTAACAAAGCTTCTGGCGGTGGTTGCGGCCGGCCGCCGCGATACGACAGTTGTCTCGGCCAGAAAAGAAATAACCCGCCGCCGGAAAACTGTGGCACCTTCAATCGCGTAAATCCCTGTTAG

Coding sequence (CDS)

ATGGCTGCAGCGGCGCTGATGATACCCACCGCTGTGACAATAATGATTCTGCTGCTGAATCCAACCGGTTGCGATGCTCTTACATCTTTCAAACCACTTCTCAACAACGACACTTCTCGTGCCGGAAAATACCTCGTCGGCGACCAAGATATGGAATCGGAGTTTCTGATGGAGTCCCACATCACCCGGATCTTAGCGTCCTCCCAAAACTTCCAAACCACCTCCACTACCGACGCTAACAAAGCTTCTGGCGGTGGTTGCGGCCGGCCGCCGCGATACGACAGTTGTCTCGGCCAGAAAAGAAATAACCCGCCGCCGGAAAACTGTGGCACCTTCAATCGCGTAAATCCCTGTTAG

Protein sequence

MAAAALMIPTAVTIMILLLNPTGCDALTSFKPLLNNDTSRAGKYLVGDQDMESEFLMESHITRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC

Homology

[Close]

BLAST of ClCG05G011610 vs. TrEMBL
Match: A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.9e-43
Identity = 85/119 (71.43%), Postives = 102/119 (85.71%), Query Frame = 1


Query: 1   MAAAALMIPTAVTIMILLLN-PTGCDALTSFKPLLNNDTSRAGKYLVGDQDMESEFLMES 60
           M A+ALMIP AV  MILLL+ P+ CDALT+F+PLL+N +S  GK ++G++DME EFLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HITRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC 119
           HI+RILASS+N+QT STT+ANKASGGGC RPPRYDSCLG+KRNNPPP NC  +NR NPC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]

BLAST of ClCG05G011610 vs. TrEMBL
Match: A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-33
Identity = 69/117 (58.97%), Postives = 91/117 (77.78%), Query Frame = 1


Query: 3   AAALMIPTAVTIMILLLNPTGCD-ALTSFKPLLNNDTSRAGKYLVGDQDMESEFLMESHI 62
           A ALMIP A+ +M+++L PT C  ALTSFKPL N+ +    KY+V ++D++S F+MESHI
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 63  TRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC 119
           +R+LA SQ+F+T+ST +A + S G C RPPRYDSCLG KRN PPP+NC TFNR +PC
Sbjct: 64  SRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of ClCG05G011610 vs. TrEMBL
Match: A0A0A0L9X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.6e-25
Identity = 65/118 (55.08%), Postives = 81/118 (68.64%), Query Frame = 1


Query: 1   MAAAALMIPTAVTIMILLLNPTGCDALTSFKPLLNNDTSRAGKYLVGDQDMESEFLMESH 60
           MAAA L I T + I+ LLL   GCDA  + KP+ N  +S  GK L+GD D  ++FLMESH
Sbjct: 1   MAAATLSIRTTLAIVTLLLVAVGCDAFIASKPVFNL-SSDLGKRLIGDID--TDFLMESH 60

Query: 61  ITRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC 119
           ++RILA  + F+T  T +AN AS   C RPPRYDSCLG+ R+NPP ENC  +NR NPC
Sbjct: 61  VSRILAELR-FETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

[Close]

BLAST of ClCG05G011610 vs. TrEMBL
Match: A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 57/122 (46.72%), Postives = 71/122 (58.20%), Query Frame = 1


Query: 3   AAALMIPT-AVTIMILLLNPTGCDALTSFKPLLNNDTSRAGKY-----LVGDQDMESEFL 62
           A    IPT A+ I+ LL NPT C+          N+T+    Y     LVGD+ ++SEFL
Sbjct: 2   ATTFSIPTMAILILTLLFNPTRCNTTV-------NETTSEWCYGSENCLVGDESLDSEFL 61

Query: 63  MESHITRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVN 119
           ME+  +R+L   QN QT  T D N+ S   CGRPPRYDSC G++R  P PENC   NR N
Sbjct: 62  METETSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRAN 116

[Close]

BLAST of ClCG05G011610 vs. TrEMBL
Match: A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.0e-16
Identity = 56/119 (47.06%), Postives = 65/119 (54.62%), Query Frame = 1


Query: 1   MAAAALMIPTAVTIMILLLNPTGCDALTSFKPLLNNDTSRAGKYLVGDQDMESEFLMESH 60
           MAA   M   A  I ILLLNP   +A  +       D++     LVGD +  SEFLM + 
Sbjct: 9   MAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTE 68

Query: 61  ITRILASS-QNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC 119
            + +L      FQT    DANK S   C RPPRYDSCLG KR+ P PE C T NRVNPC
Sbjct: 69  SSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

[Close]

BLAST of ClCG05G011610 vs. NCBI nr
Match: gi|700202648|gb|KGN57781.1| (hypothetical protein Csa_3G298580 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 7.0e-43
Identity = 85/119 (71.43%), Postives = 102/119 (85.71%), Query Frame = 1


Query: 1   MAAAALMIPTAVTIMILLLN-PTGCDALTSFKPLLNNDTSRAGKYLVGDQDMESEFLMES 60
           M A+ALMIP AV  MILLL+ P+ CDALT+F+PLL+N +S  GK ++G++DME EFLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HITRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC 119
           HI+RILASS+N+QT STT+ANKASGGGC RPPRYDSCLG+KRNNPPP NC  +NR NPC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]

BLAST of ClCG05G011610 vs. NCBI nr
Match: gi|778680757|ref|XP_011651393.1| (PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 6.5e-33
Identity = 69/117 (58.97%), Postives = 91/117 (77.78%), Query Frame = 1


Query: 3   AAALMIPTAVTIMILLLNPTGCD-ALTSFKPLLNNDTSRAGKYLVGDQDMESEFLMESHI 62
           A ALMIP A+ +M+++L PT C  ALTSFKPL N+ +    KY+V ++D++S F+MESHI
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 63  TRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC 119
           +R+LA SQ+F+T+ST +A + S G C RPPRYDSCLG KRN PPP+NC TFNR +PC
Sbjct: 64  SRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of ClCG05G011610 vs. NCBI nr
Match: gi|659114334|ref|XP_008457017.1| (PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 9.8e-29
Identity = 67/119 (56.30%), Postives = 89/119 (74.79%), Query Frame = 1


Query: 3   AAALMIPTAVTIMILLLNPTGCD-ALTSFKPLLNNDTSRAGKY-LVGDQDMESEFLMESH 62
           A A+MIP AV +MI++L PT C  A T FKPL N+ +    +Y +V ++D +S F+MESH
Sbjct: 4   APAVMIPAAVAMMIMMLIPTACGGAFTFFKPLNNHTSGGLVRYNMVEEEDTKSNFVMESH 63

Query: 63  ITRILA-SSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC 119
           I+R+LA SSQ+F+T+ST +A + S G C RPPRYDSCLG KRN PPP+NC T+NR +PC
Sbjct: 64  ISRMLADSSQDFETSSTNNATQVSTGECDRPPRYDSCLGDKRNTPPPQNCSTYNREHPC 122

[Close]

BLAST of ClCG05G011610 vs. NCBI nr
Match: gi|700202646|gb|KGN57779.1| (hypothetical protein Csa_3G298070 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 6.5e-25
Identity = 65/118 (55.08%), Postives = 81/118 (68.64%), Query Frame = 1


Query: 1   MAAAALMIPTAVTIMILLLNPTGCDALTSFKPLLNNDTSRAGKYLVGDQDMESEFLMESH 60
           MAAA L I T + I+ LLL   GCDA  + KP+ N  +S  GK L+GD D  ++FLMESH
Sbjct: 1   MAAATLSIRTTLAIVTLLLVAVGCDAFIASKPVFNL-SSDLGKRLIGDID--TDFLMESH 60

Query: 61  ITRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC 119
           ++RILA  + F+T  T +AN AS   C RPPRYDSCLG+ R+NPP ENC  +NR NPC
Sbjct: 61  VSRILAELR-FETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

[Close]

BLAST of ClCG05G011610 vs. NCBI nr
Match: gi|700198642|gb|KGN53800.1| (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 2.8e-20
Identity = 57/122 (46.72%), Postives = 71/122 (58.20%), Query Frame = 1


Query: 3   AAALMIPT-AVTIMILLLNPTGCDALTSFKPLLNNDTSRAGKY-----LVGDQDMESEFL 62
           A    IPT A+ I+ LL NPT C+          N+T+    Y     LVGD+ ++SEFL
Sbjct: 2   ATTFSIPTMAILILTLLFNPTRCNTTV-------NETTSEWCYGSENCLVGDESLDSEFL 61

Query: 63  MESHITRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVN 119
           ME+  +R+L   QN QT  T D N+ S   CGRPPRYDSC G++R  P PENC   NR N
Sbjct: 62  METETSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRAN 116

The following BLAST results are available for this feature:

BLAST of ClCG05G011610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCJ4_CUCSA	4.9e-43	71.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1	[more]
A0A0A0L711_CUCSA	4.6e-33	58.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1	[more]
A0A0A0L9X5_CUCSA	4.6e-25	55.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1	[more]
A0A0A0KVZ2_CUCSA	2.0e-20	46.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1	[more]
A0A0A0KW62_CUCSA	3.0e-16	47.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1	[more]

BLAST of ClCG05G011610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202648\|gb\|KGN57781.1\|	7.0e-43	71.43	hypothetical protein Csa_3G298580 [Cucumis sativus]	[more]
gi\|778680757\|ref\|XP_011651393.1\|	6.5e-33	58.97	PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus]	[more]
gi\|659114334\|ref\|XP_008457017.1\|	9.8e-29	56.30	PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo]	[more]
gi\|700202646\|gb\|KGN57779.1\|	6.5e-25	55.08	hypothetical protein Csa_3G298070 [Cucumis sativus]	[more]
gi\|700198642\|gb\|KGN53800.1\|	2.8e-20	46.72	hypothetical protein Csa_4G131140 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G011610.1	ClCG05G011610.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G011610	Csa3G298070	Cucumber (Chinese Long) v2	cuwcgB226
ClCG05G011610	MELO3C020218	Melon (DHL92) v3.5.1	mewcgB434
ClCG05G011610	Cla97C05G093660	Watermelon (97103) v2	wcgwmbB229
ClCG05G011610	Bhi01G001476	Wax gourd	wcgwgoB441
ClCG05G011610	CSPI03G21090	Wild cucumber (PI 183967)	cpiwcgB230
ClCG05G011610	CmaCh01G003790	Cucurbita maxima (Rimu)	cmawcgB407
ClCG05G011610	CmoCh01G003960	Cucurbita moschata (Rifu)	cmowcgB406
ClCG05G011610	Lsi05G003680	Bottle gourd (USVL1VR-Ls)	lsiwcgB332
ClCG05G011610	Cp4.1LG02g16980	Cucurbita pepo (Zucchini)	cpewcgB518
ClCG05G011610	CsGy3G020560	Cucumber (Gy14) v2	cgybwcgB208
ClCG05G011610	MELO3C020218.2	Melon (DHL92) v3.6.1	medwcgB431
ClCG05G011610	Carg07463	Silver-seed gourd	carwcgB0739
ClCG05G011610	CsaV3_3G020900	Cucumber (Chinese Long) v3	cucwcgB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G011610	Cucumber (Chinese Long) v3	cucwcgB241
ClCG05G011610	Cucumber (Gy14) v1	cgywcgB004
ClCG05G011610	Cucurbita maxima (Rimu)	cmawcgB234
ClCG05G011610	Cucurbita moschata (Rifu)	cmowcgB220
ClCG05G011610	Cucumber (Chinese Long) v2	cuwcgB233
ClCG05G011610	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G011610	Watermelon (97103) v1	wcgwmB286
ClCG05G011610	Cucurbita pepo (Zucchini)	cpewcgB560
ClCG05G011610	Cucumber (Gy14) v2	cgybwcgB217
ClCG05G011610	Melon (DHL92) v3.6.1	medwcgB417
ClCG05G011610	Silver-seed gourd	carwcgB0464