CSPI03G21090 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G21090
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 17149624 .. 17150618 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAGCAACGTTGAGCATAAGCACCACCCTGGCCATCGTGACTTTACTGCTTGTCGCAGTTGGTTGTGATGCTTTTATAGCTTCCAAACCAGTTTTCAACCTCAGTTCCGGTGAGTTTGAAGTAAAGTGTTTATGATGATTGAGATATGCTTTTATAATTTAAAAACATGGTCTGTGTATTTACTTGGGATATGGAGGGACTAATTTGCATAGACTTTGATATTTGTACCCATGAAAAGAATTTTGAAATCCTTGTTGATTTCAGTCCTATTTTTCCTTTCCATTTTTTTAACTAAAAGAGTTGATTTCGGTAGCTTTTGTTAAAATGTGAAATATATTGTAAATTTGGTCAAATACTACCTCTTCATTGTTATTTTTAATATAAAAATTGTTATTTATTACCGTTATTATTTTCACCCAAAAAATTGAAAACGTATTCAAATATTATATTTTCTTGAATAAAAAAAGTGTTACAGTTAATATAAATAAAAATTAAGTTTGAGGGACTGGTATTAAAAATAACTTTTAGAGATTAAATTTAAGATTTATTAAAAATACAAAAACTAAAATTAAACATACTTAAAGACTAAAATCAAACTACAATCATTTTTATTAATTTTCTCATCCTAAATCGGCAATTATCATGCAGCTATATGATCAAATTTGCTCTTAAGAGTTCTAAATTAAATAAAACTGAAGTTTAGTATTATTTTGAAAAGTATCTCAAATTAAACTCACGAACAAAGGTTGTATGCCCTAGATCTTGGGAAACGTCTGATTGGAGATATCGATACCGATTTTCTAATGGAGTCGCATGTGAGTCGAATTTTAGCCGAGCTGAGGTTCGAAACAATGAGAACTCCAAATGCAAACTCTGCATCGGTGGTCAATTGTGAACGGCCGCCACGCTATGATAGTTGCCTCGGCGAAGCAAGGGATAATCCTCCATCGGAGAACTGTGACCCTTACAACCGCGCCAATCCCTGTTAA

mRNA sequence

ATGGCTGCAGCAACGTTGAGCATAAGCACCACCCTGGCCATCGTGACTTTACTGCTTGTCGCAGTTGGTTGTGATGCTTTTATAGCTTCCAAACCAGTTTTCAACCTCAGTTCCGATCTTGGGAAACGTCTGATTGGAGATATCGATACCGATTTTCTAATGGAGTCGCATGTGAGTCGAATTTTAGCCGAGCTGAGGTTCGAAACAATGAGAACTCCAAATGCAAACTCTGCATCGGTGGTCAATTGTGAACGGCCGCCACGCTATGATAGTTGCCTCGGCGAAGCAAGGGATAATCCTCCATCGGAGAACTGTGACCCTTACAACCGCGCCAATCCCTGTTAA

Coding sequence (CDS)

ATGGCTGCAGCAACGTTGAGCATAAGCACCACCCTGGCCATCGTGACTTTACTGCTTGTCGCAGTTGGTTGTGATGCTTTTATAGCTTCCAAACCAGTTTTCAACCTCAGTTCCGATCTTGGGAAACGTCTGATTGGAGATATCGATACCGATTTTCTAATGGAGTCGCATGTGAGTCGAATTTTAGCCGAGCTGAGGTTCGAAACAATGAGAACTCCAAATGCAAACTCTGCATCGGTGGTCAATTGTGAACGGCCGCCACGCTATGATAGTTGCCTCGGCGAAGCAAGGGATAATCCTCCATCGGAGAACTGTGACCCTTACAACCGCGCCAATCCCTGTTAA

Homology

[Close]

BLAST of CSPI03G21090 vs. TrEMBL
Match: A0A0A0L9X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.4e-55
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 1


Query: 1   MAAATLSISTTLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLIGDIDTDFLMESHVSR 60
           MAAATLSI TTLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLIGDIDTDFLMESHVSR
Sbjct: 1   MAAATLSIRTTLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLIGDIDTDFLMESHVSR 60

Query: 61  ILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 115
           ILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC
Sbjct: 61  ILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

[Close]

BLAST of CSPI03G21090 vs. TrEMBL
Match: A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-20
Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 1


Query: 1   MAAATLSISTTLAIVTLLL-VAVGCDAFIASKPVF-NLSSDLGKRLIG--DIDTDFLMES 60
           M A+ L I   +  + LLL +   CDA    +P+  N SS  GK ++G  D++ +FLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HVSRILAELR-FETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 115
           H+SRILA  + ++T  T NAN AS   C+RPPRYDSCLG+ R+NPP  NC PYNRANPC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]

BLAST of CSPI03G21090 vs. TrEMBL
Match: A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-15
Identity = 51/117 (43.59%), Postives = 73/117 (62.39%), Query Frame = 1


Query: 3   AATLSISTTLAIVTLLLVAVGCDAFIAS-KPVFN-LSSDLGKRLIG--DIDTDFLMESHV 62
           A  L I   +A++ ++L+   C   + S KP+ N  S  L K ++   DI ++F+MESH+
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 63  SRILAELR-FETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 115
           SR+LA+ + FET  T NA   S   C+RPPRYDSCLG  R+ PP +NC  +NR +PC
Sbjct: 64  SRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of CSPI03G21090 vs. TrEMBL
Match: A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.2e-11
Identity = 51/118 (43.22%), Postives = 66/118 (55.93%), Query Frame = 1


Query: 3   AATLSIST-TLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLIGD--IDTDFLMESHVS 62
           A T SI T  + I+TLL     C+  + ++            L+GD  +D++FLME+  S
Sbjct: 2   ATTFSIPTMAILILTLLFNPTRCNTTV-NETTSEWCYGSENCLVGDESLDSEFLMETETS 61

Query: 63  RILAELRFETMRTPNA---NSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 115
           R+L  L F+ ++TP     N  SV  C RPPRYDSC GE R  P  ENCD  NRANPC
Sbjct: 62  RML--LDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]

BLAST of CSPI03G21090 vs. TrEMBL
Match: A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-08
Identity = 44/118 (37.29%), Postives = 68/118 (57.63%), Query Frame = 1


Query: 3   AATLSISTTLAIVTLLLV--AVGCDAFIASKPVFNLSSDLGKRLIGDIDT--DFLMESHV 62
           AATL++ +   ++T+LL+   +       ++  +  S+ L   L+GD+++  +FLM +  
Sbjct: 10  AATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTES 69

Query: 63  SRILAE--LRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 115
           S +L +  L F+T +  +AN  SV +C RPPRYDSCLG  R  P  E C   NR NPC
Sbjct: 70  SGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

[Close]

BLAST of CSPI03G21090 vs. NCBI nr
Match: gi|700202646|gb|KGN57779.1| (hypothetical protein Csa_3G298070 [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 3.5e-55
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 1


Query: 1   MAAATLSISTTLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLIGDIDTDFLMESHVSR 60
           MAAATLSI TTLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLIGDIDTDFLMESHVSR
Sbjct: 1   MAAATLSIRTTLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLIGDIDTDFLMESHVSR 60

Query: 61  ILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 115
           ILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC
Sbjct: 61  ILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

[Close]

BLAST of CSPI03G21090 vs. NCBI nr
Match: gi|700202648|gb|KGN57781.1| (hypothetical protein Csa_3G298580 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 2.8e-20
Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 1


Query: 1   MAAATLSISTTLAIVTLLL-VAVGCDAFIASKPVF-NLSSDLGKRLIG--DIDTDFLMES 60
           M A+ L I   +  + LLL +   CDA    +P+  N SS  GK ++G  D++ +FLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HVSRILAELR-FETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 115
           H+SRILA  + ++T  T NAN AS   C+RPPRYDSCLG+ R+NPP  NC PYNRANPC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]

BLAST of CSPI03G21090 vs. NCBI nr
Match: gi|778680757|ref|XP_011651393.1| (PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 4.6e-15
Identity = 51/117 (43.59%), Postives = 73/117 (62.39%), Query Frame = 1


Query: 3   AATLSISTTLAIVTLLLVAVGCDAFIAS-KPVFN-LSSDLGKRLIG--DIDTDFLMESHV 62
           A  L I   +A++ ++L+   C   + S KP+ N  S  L K ++   DI ++F+MESH+
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 63  SRILAELR-FETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 115
           SR+LA+ + FET  T NA   S   C+RPPRYDSCLG  R+ PP +NC  +NR +PC
Sbjct: 64  SRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of CSPI03G21090 vs. NCBI nr
Match: gi|659114334|ref|XP_008457017.1| (PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-14
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = 1


Query: 3   AATLSISTTLAIVTLLLVAVGCD-AFIASKPVFNLSSD--LGKRLIGDIDT--DFLMESH 62
           A  + I   +A++ ++L+   C  AF   KP+ N +S   +   ++ + DT  +F+MESH
Sbjct: 4   APAVMIPAAVAMMIMMLIPTACGGAFTFFKPLNNHTSGGLVRYNMVEEEDTKSNFVMESH 63

Query: 63  VSRILAELR--FETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 115
           +SR+LA+    FET  T NA   S   C+RPPRYDSCLG+ R+ PP +NC  YNR +PC
Sbjct: 64  ISRMLADSSQDFETSSTNNATQVSTGECDRPPRYDSCLGDKRNTPPPQNCSTYNREHPC 122

[Close]

BLAST of CSPI03G21090 vs. NCBI nr
Match: gi|700198642|gb|KGN53800.1| (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 8.9e-11
Identity = 51/118 (43.22%), Postives = 66/118 (55.93%), Query Frame = 1


Query: 3   AATLSIST-TLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLIGD--IDTDFLMESHVS 62
           A T SI T  + I+TLL     C+  + ++            L+GD  +D++FLME+  S
Sbjct: 2   ATTFSIPTMAILILTLLFNPTRCNTTV-NETTSEWCYGSENCLVGDESLDSEFLMETETS 61

Query: 63  RILAELRFETMRTPNA---NSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 115
           R+L  L F+ ++TP     N  SV  C RPPRYDSC GE R  P  ENCD  NRANPC
Sbjct: 62  RML--LDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

The following BLAST results are available for this feature:

BLAST of CSPI03G21090 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G21090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9X5_CUCSA	2.4e-55	99.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1	[more]
A0A0A0LCJ4_CUCSA	1.9e-20	51.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1	[more]
A0A0A0L711_CUCSA	3.2e-15	43.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1	[more]
A0A0A0KVZ2_CUCSA	6.2e-11	43.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1	[more]
A0A0A0KW62_CUCSA	2.2e-08	37.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1	[more]

BLAST of CSPI03G21090 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G21090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202646\|gb\|KGN57779.1\|	3.5e-55	99.12	hypothetical protein Csa_3G298070 [Cucumis sativus]	[more]
gi\|700202648\|gb\|KGN57781.1\|	2.8e-20	51.26	hypothetical protein Csa_3G298580 [Cucumis sativus]	[more]
gi\|778680757\|ref\|XP_011651393.1\|	4.6e-15	43.59	PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus]	[more]
gi\|659114334\|ref\|XP_008457017.1\|	3.0e-14	42.02	PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo]	[more]
gi\|700198642\|gb\|KGN53800.1\|	8.9e-11	43.22	hypothetical protein Csa_4G131140 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G21090.1	CSPI03G21090.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G21090	Csa3G298070	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G21090	MELO3C020218	Melon (DHL92) v3.5.1	cpimeB243
CSPI03G21090	ClCG05G011610	Watermelon (Charleston Gray)	cpiwcgB230
CSPI03G21090	Lsi05G003680	Bottle gourd (USVL1VR-Ls)	cpilsiB203
CSPI03G21090	MELO3C020218.2	Melon (DHL92) v3.6.1	cpimedB240
CSPI03G21090	CsaV3_3G020900	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G21090	Cla97C05G093660	Watermelon (97103) v2	cpiwmbB213
CSPI03G21090	CsGy3G020560	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G21090	Carg07463	Silver-seed gourd	carcpiB0798

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G21090	Watermelon (97103) v2	cpiwmbB224
CSPI03G21090	Wax gourd	cpiwgoB271
CSPI03G21090	Wax gourd	cpiwgoB303
CSPI03G21090	Cucurbita maxima (Rimu)	cmacpiB244
CSPI03G21090	Cucurbita maxima (Rimu)	cmacpiB458
CSPI03G21090	Cucurbita moschata (Rifu)	cmocpiB232
CSPI03G21090	Cucurbita moschata (Rifu)	cmocpiB446
CSPI03G21090	Watermelon (97103) v1	cpiwmB236
CSPI03G21090	Cucurbita pepo (Zucchini)	cpecpiB602
CSPI03G21090	Bottle gourd (USVL1VR-Ls)	cpilsiB210
CSPI03G21090	Silver-seed gourd	carcpiB0519
CSPI03G21090	Silver-seed gourd	carcpiB0520