Lsi05G003680 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G003680
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 4668818 .. 4670059 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCCTTCCCAATTGTCTTTTCATTCACCGTCGTGCTCGACACCGACATCAAAACCTAGCCACGACGATGGCCGCAGCAACGTTGATGATACCCGCCACCATAGCCGTCGTGATTTTGCTGCTCATTCCGGCTGATTGCGATGCCTTTACAGCTTCCAAACCACTTTTGAACCTCACTTCCGGTGAGTTTGAAATAATCTTGGGGAGGGATATAGAAAGTAAAGTGTTTATAATTATTGAAATATGCTTTTTTTTTTTAATAAAAAAAATGGTCTGTTTATATACTTGGGATATAGAGATGAAATAGAATTTTGAAATCCTAGTTGTCAACATTTAGGGAAAATATCATTTTAGTCCTATAGTTTCAAGTTTATTCAATTTTAATTATTGTACTTTGAAATATCCAATTTTATCTGTATTTTCAAGAAATTTAAAATTTAATCTCTATTACTTGTTTGTTTTTGGTTTTTTTTTTAAAAAAAATTGTTATTTATTAGTATTTTCAATCTAAATTTTGAAAATATATTATTATATTATATTTTTTTGAATGAAAATATTATTATTATTTATCTAATATCAAAAAACATTAACTTTGAGAGTCTAAGTTTAAGATTTATTAAAATTACAGATACTAAAATTGAATAAAATATTGAACTGAACTAAAATGATATTTTTTGCAATTATTATGTAGTTATAAGATCGAATATCCTTTTGAAAATTCTAAAATATATAAAAAAGACATTTATTACTCCTTTTTCAAAAGCCATCTCAAACTCACTAATAAATGTTGTATATCCTAGATCTTGGAAAACTCCTTGTTGGAGATATCGATACGGAATTTCTAATGGAATCGCATGTGAGTCGAATTCTAGCCGAGCTGAGGTTCGAAACTATGAGGACACCGAATGCCAACTCGGCTTCAGTGGTCAATTGCGAACGACCGCCACGCTACGACAGTTGCCTCGGTGAAGCAAGGGATAATCCACCGCCGGAAAACTGCGACCCCTTCAATCGCGTCAATCCCTGTTAATTAGAATGAAAAGAAAGAAAGAATAAGGAGATCCAACAGCTTCATTATGATTTAGGGTTTACAACAACTTTTAGGAATTAATAATGTAATCAACACATAAATAGTAGTAAGTAAGATCGTTTCCATATATGTTGTTTGATCAAATTTTGTGACTTTTATCTTTCTTGTTCAGTTGAATATTGAATGAAACTATATATCTTTGTTGGATTGCA

mRNA sequence

CCTCCTTCCCAATTGTCTTTTCATTCACCGTCGTGCTCGACACCGACATCAAAACCTAGCCACGACGATGGCCGCAGCAACGTTGATGATACCCGCCACCATAGCCGTCGTGATTTTGCTGCTCATTCCGGCTGATTGCGATGCCTTTACAGCTTCCAAACCACTTTTGAACCTCACTTCCGATCTTGGAAAACTCCTTGTTGGAGATATCGATACGGAATTTCTAATGGAATCGCATGTGAGTCGAATTCTAGCCGAGCTGAGGTTCGAAACTATGAGGACACCGAATGCCAACTCGGCTTCAGTGGTCAATTGCGAACGACCGCCACGCTACGACAGTTGCCTCGGTGAAGCAAGGGATAATCCACCGCCGGAAAACTGCGACCCCTTCAATCGCGTCAATCCCTGTTAATTAGAATGAAAAGAAAGAAAGAATAAGGAGATCCAACAGCTTCATTATGATTTAGGGTTTACAACAACTTTTAGGAATTAATAATGTAATCAACACATAAATAGTAGTAAGTAAGATCGTTTCCATATATGTTGTTTGATCAAATTTTGTGACTTTTATCTTTCTTGTTCAGTTGAATATTGAATGAAACTATATATCTTTGTTGGATTGCA

Coding sequence (CDS)

ATGGCCGCAGCAACGTTGATGATACCCGCCACCATAGCCGTCGTGATTTTGCTGCTCATTCCGGCTGATTGCGATGCCTTTACAGCTTCCAAACCACTTTTGAACCTCACTTCCGATCTTGGAAAACTCCTTGTTGGAGATATCGATACGGAATTTCTAATGGAATCGCATGTGAGTCGAATTCTAGCCGAGCTGAGGTTCGAAACTATGAGGACACCGAATGCCAACTCGGCTTCAGTGGTCAATTGCGAACGACCGCCACGCTACGACAGTTGCCTCGGTGAAGCAAGGGATAATCCACCGCCGGAAAACTGCGACCCCTTCAATCGCGTCAATCCCTGTTAA

Protein sequence

MAAATLMIPATIAVVILLLIPADCDAFTASKPLLNLTSDLGKLLVGDIDTEFLMESHVSRILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPPENCDPFNRVNPC
Homology
[Close]
BLAST of Lsi05G003680 vs. TrEMBL
Match: A0A0A0L9X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 7.7e-46
Identity = 94/114 (82.46%), Postives = 102/114 (89.47%), Query Frame = 1 

Query: 1   MAAATLMIPATIAVVILLLIPADCDAFTASKPLLNLTSDLGKLLVGDIDTEFLMESHVSR 60
           MAAATL I  T+A+V LLL+   CDAF ASKP+ NL+SDLGK L+GDIDT+FLMESHVSR
Sbjct: 1   MAAATLSIRTTLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLIGDIDTDFLMESHVSR 60

Query: 61  ILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPPENCDPFNRVNPC 115
           ILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPP ENCDP+NR NPC
Sbjct: 61  ILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

[Close]
BLAST of Lsi05G003680 vs. TrEMBL
Match: A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-26
Identity = 70/119 (58.82%), Postives = 88/119 (73.95%), Query Frame = 1 

Query: 1   MAAATLMIPATIAVVILLL-IPADCDAFTASKPLL-NLTSDLGKLLVG--DIDTEFLMES 60
           M A+ LMIPA +  +ILLL IP+ CDA T  +PLL N +S  GKL++G  D++ EFLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HVSRILAELR-FETMRTPNANSASVVNCERPPRYDSCLGEARDNPPPENCDPFNRVNPC 115
           H+SRILA  + ++T  T NAN AS   C+RPPRYDSCLG+ R+NPPP NC P+NR NPC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]
BLAST of Lsi05G003680 vs. TrEMBL
Match: A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 62/117 (52.99%), Postives = 80/117 (68.38%), Query Frame = 1 

Query: 3   AATLMIPATIAVVILLLIPADCD-AFTASKPLLNLTSD-LGKLLVG--DIDTEFLMESHV 62
           A  LMIPA +A+++++LIP  C  A T+ KPL N TS  L K +V   DI + F+MESH+
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 63  SRILAELR-FETMRTPNANSASVVNCERPPRYDSCLGEARDNPPPENCDPFNRVNPC 115
           SR+LA+ + FET  T NA   S   C+RPPRYDSCLG  R+ PPP+NC  FNR +PC
Sbjct: 64  SRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]
BLAST of Lsi05G003680 vs. TrEMBL
Match: A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-12
Identity = 55/119 (46.22%), Postives = 69/119 (57.98%), Query Frame = 1 

Query: 3   AATLMIPATIAVVILLLI--PADCDAFTASKPLLNLTSDLGKLLVGD--IDTEFLMESHV 62
           A T  IP T+A++IL L+  P  C+  T ++            LVGD  +D+EFLME+  
Sbjct: 2   ATTFSIP-TMAILILTLLFNPTRCNT-TVNETTSEWCYGSENCLVGDESLDSEFLMETET 61

Query: 63  SRILAELRFETMRTPNA---NSASVVNCERPPRYDSCLGEARDNPPPENCDPFNRVNPC 115
           SR+L  L F+ ++TP     N  SV  C RPPRYDSC GE R  P PENCD  NR NPC
Sbjct: 62  SRML--LDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

[Close]
BLAST of Lsi05G003680 vs. TrEMBL
Match: A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.3e-10
Identity = 51/118 (43.22%), Postives = 69/118 (58.47%), Query Frame = 1 

Query: 3   AATLMIPA-TIAVVILLLIPADCDA-FTASKPLLNLTSDLGKLLVGDIDT--EFLMESHV 62
           AATL +P+    + ILLL P   +A    ++     ++ L   LVGD+++  EFLM +  
Sbjct: 10  AATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTES 69

Query: 63  SRILAE--LRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPPENCDPFNRVNPC 115
           S +L +  L F+T +  +AN  SV +C RPPRYDSCLG  R  P PE C   NRVNPC
Sbjct: 70  SGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

[Close]
BLAST of Lsi05G003680 vs. NCBI nr
Match: gi|700202646|gb|KGN57779.1| (hypothetical protein Csa_3G298070 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-45
Identity = 94/114 (82.46%), Postives = 102/114 (89.47%), Query Frame = 1 

Query: 1   MAAATLMIPATIAVVILLLIPADCDAFTASKPLLNLTSDLGKLLVGDIDTEFLMESHVSR 60
           MAAATL I  T+A+V LLL+   CDAF ASKP+ NL+SDLGK L+GDIDT+FLMESHVSR
Sbjct: 1   MAAATLSIRTTLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLIGDIDTDFLMESHVSR 60

Query: 61  ILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPPENCDPFNRVNPC 115
           ILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPP ENCDP+NR NPC
Sbjct: 61  ILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

[Close]
BLAST of Lsi05G003680 vs. NCBI nr
Match: gi|700202648|gb|KGN57781.1| (hypothetical protein Csa_3G298580 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-26
Identity = 70/119 (58.82%), Postives = 88/119 (73.95%), Query Frame = 1 

Query: 1   MAAATLMIPATIAVVILLL-IPADCDAFTASKPLL-NLTSDLGKLLVG--DIDTEFLMES 60
           M A+ LMIPA +  +ILLL IP+ CDA T  +PLL N +S  GKL++G  D++ EFLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HVSRILAELR-FETMRTPNANSASVVNCERPPRYDSCLGEARDNPPPENCDPFNRVNPC 115
           H+SRILA  + ++T  T NAN AS   C+RPPRYDSCLG+ R+NPPP NC P+NR NPC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]
BLAST of Lsi05G003680 vs. NCBI nr
Match: gi|778680757|ref|XP_011651393.1| (PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 2.1e-20
Identity = 62/117 (52.99%), Postives = 80/117 (68.38%), Query Frame = 1 

Query: 3   AATLMIPATIAVVILLLIPADCD-AFTASKPLLNLTSD-LGKLLVG--DIDTEFLMESHV 62
           A  LMIPA +A+++++LIP  C  A T+ KPL N TS  L K +V   DI + F+MESH+
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 63  SRILAELR-FETMRTPNANSASVVNCERPPRYDSCLGEARDNPPPENCDPFNRVNPC 115
           SR+LA+ + FET  T NA   S   C+RPPRYDSCLG  R+ PPP+NC  FNR +PC
Sbjct: 64  SRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]
BLAST of Lsi05G003680 vs. NCBI nr
Match: gi|659114334|ref|XP_008457017.1| (PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-19
Identity = 60/119 (50.42%), Postives = 80/119 (67.23%), Query Frame = 1 

Query: 3   AATLMIPATIAVVILLLIPADCD-AFTASKPLLNLTSD--LGKLLVGDIDTE--FLMESH 62
           A  +MIPA +A++I++LIP  C  AFT  KPL N TS   +   +V + DT+  F+MESH
Sbjct: 4   APAVMIPAAVAMMIMMLIPTACGGAFTFFKPLNNHTSGGLVRYNMVEEEDTKSNFVMESH 63

Query: 63  VSRILAELR--FETMRTPNANSASVVNCERPPRYDSCLGEARDNPPPENCDPFNRVNPC 115
           +SR+LA+    FET  T NA   S   C+RPPRYDSCLG+ R+ PPP+NC  +NR +PC
Sbjct: 64  ISRMLADSSQDFETSSTNNATQVSTGECDRPPRYDSCLGDKRNTPPPQNCSTYNREHPC 122

[Close]
BLAST of Lsi05G003680 vs. NCBI nr
Match: gi|700198642|gb|KGN53800.1| (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 55/119 (46.22%), Postives = 69/119 (57.98%), Query Frame = 1 

Query: 3   AATLMIPATIAVVILLLI--PADCDAFTASKPLLNLTSDLGKLLVGD--IDTEFLMESHV 62
           A T  IP T+A++IL L+  P  C+  T ++            LVGD  +D+EFLME+  
Sbjct: 2   ATTFSIP-TMAILILTLLFNPTRCNT-TVNETTSEWCYGSENCLVGDESLDSEFLMETET 61

Query: 63  SRILAELRFETMRTPNA---NSASVVNCERPPRYDSCLGEARDNPPPENCDPFNRVNPC 115
           SR+L  L F+ ++TP     N  SV  C RPPRYDSC GE R  P PENCD  NR NPC
Sbjct: 62  SRML--LDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRANPC 116

The following BLAST results are available for this feature:
BLAST of Lsi05G003680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G003680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9X5_CUCSA7.7e-4682.46Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1[more]
A0A0A0LCJ4_CUCSA1.0e-2658.82Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1[more]
A0A0A0L711_CUCSA1.5e-2052.99Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1[more]
A0A0A0KVZ2_CUCSA1.1e-1246.22Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1[more]
A0A0A0KW62_CUCSA2.3e-1043.22Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1[more]
BLAST of Lsi05G003680 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G003680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202646|gb|KGN57779.1|1.1e-4582.46hypothetical protein Csa_3G298070 [Cucumis sativus][more]
gi|700202648|gb|KGN57781.1|1.5e-2658.82hypothetical protein Csa_3G298580 [Cucumis sativus][more]
gi|778680757|ref|XP_011651393.1|2.1e-2052.99PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus][more]
gi|659114334|ref|XP_008457017.1|2.3e-1950.42PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo][more]
gi|700198642|gb|KGN53800.1|1.6e-1246.22hypothetical protein Csa_4G131140 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G003680.1Lsi05G003680.1mRNA