Cla013231 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013231
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 13334361 .. 13335817 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAGCGGCGCTGATGATACCCACCGCTGTGACAATAATGATTCTGCTGCTGAATCCAACCGGTTGCGATGCTCTTACATCTTTCAAACCACTTCTCAACAACGACACTTCTCGTAAGTTTCGAAAACCTTTTGATATGGAATTTCTATGAATATATTTGGAATCAAAATTGTTTTAAAATTGCTAGATTTATTTATTTGTTTTTTTTGAAATGAAACTTCGTAAAAGCAAAGAAAAGCCCCCTCAATAGGGCACCGGGAACAGAAAAATCACTATGCTAGATTTTTTTTTTTTTTCTCTTCTTCTTGTTATTTATTTTGATAATTGTACTTTTTTATGATATACTTTTAAGGTTTAAAAATATTTAATATATTGGTAAATTTTTAATTTTGTGTCTAATTAATTCTTTAGAATTAAAAGTATTTGGTATATTAAAATGATTTCACTTTTAAATTTGTAAATACTAAAATAATTTCACTTTTAAATTTGTATCTATTAAGTTATTAATATATCAAAATTTTGAAGAAGATTAATTGGTCTACTGAGACATTGAATTAAAATTTGAGTCTAATAAAACTCTAAATATTTATTTATGTCATAGGTTTGTAGATTTTAAAAACATGTCAAATAATTTGATGTGACCTATGTAAGAAAGCAATATAAAAAATTTAGAGATGCATCATAAACAAAATTTTAAAGTTGGTTTTTTGTTTTAAAATATTAGAAAAGTATTAATAATACTTTATTAACTGTAATTTGGTCTTTGGTTCATTTTATTACTGTAGTTTCTTCTCAAATTTGTCCTATTGTTTTATATTAAATCAATTTGATGTTTATATTTTTAAAATATTTATTTTAGTCTTTCCACTTTTTAAAAGTGACAATTTTAATTCTTATTTATATAATTTTAACATTAGTATTTTTTAAGAAAATGTTAAAAATAAAAATTAAATAACTAATTAGATTCTCTAGACTTCAAAATTCAATTTAGTACTCCAAATGCTACTAACACATTTAACTAAAATAGTCCCTCTAAAATATTTAATTAAAATCTTCACTTTCTTAATGTACAAAACAAAGTCAAAAGTATGAAAATTAAAATAGAGTTTAAATCAAATTAATTGCACGAATAAAATAGACATAAAACAAAATTGTAACCCGAACCTTATAAAGAATGAAAACCCATTCTTGATTTTGGAGTGGTGTCACGCAGGTGCCGGAAAATACCTCGTCGGCGACCAAGATATGGAATCGGAGTTTCTGATGGAGTCCCACATCACCCGGATCTTAGCGTCCTCCCAAAACTTCCAAACCACCTCCACTACCGACGCTAACAAAGCTTCTGGCGGTGGTTGCGGCCGGCCGCCGCGATACGACAGTTGTCTCGGCCAGAAAAGAAATAACCCGCCGCCGGAAAACTGTGGCACCTTCAATCGCGTAAATCCCTGTTAG

mRNA sequence

ATGGCTGCAGCGGCGCTGATGATACCCACCGCTGTGACAATAATGATTCTGCTGCTGAATCCAACCGGTTGCGATGCTCTTACATCTTTCAAACCACTTCTCAACAACGACACTTCTCGTGCCGGAAAATACCTCGTCGGCGACCAAGATATGGAATCGGAGTTTCTGATGGAGTCCCACATCACCCGGATCTTAGCGTCCTCCCAAAACTTCCAAACCACCTCCACTACCGACGCTAACAAAGCTTCTGGCGGTGGTTGCGGCCGGCCGCCGCGATACGACAGTTGTCTCGGCCAGAAAAGAAATAACCCGCCGCCGGAAAACTGTGGCACCTTCAATCGCGTAAATCCCTGTTAG

Coding sequence (CDS)

ATGGCTGCAGCGGCGCTGATGATACCCACCGCTGTGACAATAATGATTCTGCTGCTGAATCCAACCGGTTGCGATGCTCTTACATCTTTCAAACCACTTCTCAACAACGACACTTCTCGTGCCGGAAAATACCTCGTCGGCGACCAAGATATGGAATCGGAGTTTCTGATGGAGTCCCACATCACCCGGATCTTAGCGTCCTCCCAAAACTTCCAAACCACCTCCACTACCGACGCTAACAAAGCTTCTGGCGGTGGTTGCGGCCGGCCGCCGCGATACGACAGTTGTCTCGGCCAGAAAAGAAATAACCCGCCGCCGGAAAACTGTGGCACCTTCAATCGCGTAAATCCCTGTTAG

Protein sequence

MAAAALMIPTAVTIMILLLNPTGCDALTSFKPLLNNDTSRAGKYLVGDQDMESEFLMESHITRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC

Homology

[Close]

BLAST of Cla013231 vs. TrEMBL
Match: A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.9e-43
Identity = 85/119 (71.43%), Postives = 102/119 (85.71%), Query Frame = 1


Query: 1   MAAAALMIPTAVTIMILLLN-PTGCDALTSFKPLLNNDTSRAGKYLVGDQDMESEFLMES 60
           M A+ALMIP AV  MILLL+ P+ CDALT+F+PLL+N +S  GK ++G++DME EFLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HITRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC 119
           HI+RILASS+N+QT STT+ANKASGGGC RPPRYDSCLG+KRNNPPP NC  +NR NPC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]

BLAST of Cla013231 vs. TrEMBL
Match: A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-33
Identity = 69/117 (58.97%), Postives = 91/117 (77.78%), Query Frame = 1


Query: 3   AAALMIPTAVTIMILLLNPTGCD-ALTSFKPLLNNDTSRAGKYLVGDQDMESEFLMESHI 62
           A ALMIP A+ +M+++L PT C  ALTSFKPL N+ +    KY+V ++D++S F+MESHI
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 63  TRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC 119
           +R+LA SQ+F+T+ST +A + S G C RPPRYDSCLG KRN PPP+NC TFNR +PC
Sbjct: 64  SRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of Cla013231 vs. TrEMBL
Match: A0A0A0L9X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.6e-25
Identity = 65/118 (55.08%), Postives = 81/118 (68.64%), Query Frame = 1


Query: 1   MAAAALMIPTAVTIMILLLNPTGCDALTSFKPLLNNDTSRAGKYLVGDQDMESEFLMESH 60
           MAAA L I T + I+ LLL   GCDA  + KP+ N  +S  GK L+GD D  ++FLMESH
Sbjct: 1   MAAATLSIRTTLAIVTLLLVAVGCDAFIASKPVFNL-SSDLGKRLIGDID--TDFLMESH 60

Query: 61  ITRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC 119
           ++RILA  + F+T  T +AN AS   C RPPRYDSCLG+ R+NPP ENC  +NR NPC
Sbjct: 61  VSRILAELR-FETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

[Close]

BLAST of Cla013231 vs. TrEMBL
Match: A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 57/122 (46.72%), Postives = 71/122 (58.20%), Query Frame = 1


Query: 3   AAALMIPT-AVTIMILLLNPTGCDALTSFKPLLNNDTSRAGKY-----LVGDQDMESEFL 62
           A    IPT A+ I+ LL NPT C+          N+T+    Y     LVGD+ ++SEFL
Sbjct: 2   ATTFSIPTMAILILTLLFNPTRCNTTV-------NETTSEWCYGSENCLVGDESLDSEFL 61

Query: 63  MESHITRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVN 119
           ME+  +R+L   QN QT  T D N+ S   CGRPPRYDSC G++R  P PENC   NR N
Sbjct: 62  METETSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRAN 116

[Close]

BLAST of Cla013231 vs. TrEMBL
Match: A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.0e-16
Identity = 56/119 (47.06%), Postives = 65/119 (54.62%), Query Frame = 1


Query: 1   MAAAALMIPTAVTIMILLLNPTGCDALTSFKPLLNNDTSRAGKYLVGDQDMESEFLMESH 60
           MAA   M   A  I ILLLNP   +A  +       D++     LVGD +  SEFLM + 
Sbjct: 9   MAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTE 68

Query: 61  ITRILASS-QNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC 119
            + +L      FQT    DANK S   C RPPRYDSCLG KR+ P PE C T NRVNPC
Sbjct: 69  SSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

[Close]

BLAST of Cla013231 vs. NCBI nr
Match: gi|700202648|gb|KGN57781.1| (hypothetical protein Csa_3G298580 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 7.0e-43
Identity = 85/119 (71.43%), Postives = 102/119 (85.71%), Query Frame = 1


Query: 1   MAAAALMIPTAVTIMILLLN-PTGCDALTSFKPLLNNDTSRAGKYLVGDQDMESEFLMES 60
           M A+ALMIP AV  MILLL+ P+ CDALT+F+PLL+N +S  GK ++G++DME EFLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HITRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC 119
           HI+RILASS+N+QT STT+ANKASGGGC RPPRYDSCLG+KRNNPPP NC  +NR NPC
Sbjct: 61  HISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANPC 119

[Close]

BLAST of Cla013231 vs. NCBI nr
Match: gi|778680757|ref|XP_011651393.1| (PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 6.5e-33
Identity = 69/117 (58.97%), Postives = 91/117 (77.78%), Query Frame = 1


Query: 3   AAALMIPTAVTIMILLLNPTGCD-ALTSFKPLLNNDTSRAGKYLVGDQDMESEFLMESHI 62
           A ALMIP A+ +M+++L PT C  ALTSFKPL N+ +    KY+V ++D++S F+MESHI
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 63  TRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC 119
           +R+LA SQ+F+T+ST +A + S G C RPPRYDSCLG KRN PPP+NC TFNR +PC
Sbjct: 64  SRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHPC 120

[Close]

BLAST of Cla013231 vs. NCBI nr
Match: gi|659114334|ref|XP_008457017.1| (PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 9.8e-29
Identity = 67/119 (56.30%), Postives = 89/119 (74.79%), Query Frame = 1


Query: 3   AAALMIPTAVTIMILLLNPTGCD-ALTSFKPLLNNDTSRAGKY-LVGDQDMESEFLMESH 62
           A A+MIP AV +MI++L PT C  A T FKPL N+ +    +Y +V ++D +S F+MESH
Sbjct: 4   APAVMIPAAVAMMIMMLIPTACGGAFTFFKPLNNHTSGGLVRYNMVEEEDTKSNFVMESH 63

Query: 63  ITRILA-SSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC 119
           I+R+LA SSQ+F+T+ST +A + S G C RPPRYDSCLG KRN PPP+NC T+NR +PC
Sbjct: 64  ISRMLADSSQDFETSSTNNATQVSTGECDRPPRYDSCLGDKRNTPPPQNCSTYNREHPC 122

[Close]

BLAST of Cla013231 vs. NCBI nr
Match: gi|700202646|gb|KGN57779.1| (hypothetical protein Csa_3G298070 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 6.5e-25
Identity = 65/118 (55.08%), Postives = 81/118 (68.64%), Query Frame = 1


Query: 1   MAAAALMIPTAVTIMILLLNPTGCDALTSFKPLLNNDTSRAGKYLVGDQDMESEFLMESH 60
           MAAA L I T + I+ LLL   GCDA  + KP+ N  +S  GK L+GD D  ++FLMESH
Sbjct: 1   MAAATLSIRTTLAIVTLLLVAVGCDAFIASKPVFNL-SSDLGKRLIGDID--TDFLMESH 60

Query: 61  ITRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVNPC 119
           ++RILA  + F+T  T +AN AS   C RPPRYDSCLG+ R+NPP ENC  +NR NPC
Sbjct: 61  VSRILAELR-FETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

[Close]

BLAST of Cla013231 vs. NCBI nr
Match: gi|700198642|gb|KGN53800.1| (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 2.8e-20
Identity = 57/122 (46.72%), Postives = 71/122 (58.20%), Query Frame = 1


Query: 3   AAALMIPT-AVTIMILLLNPTGCDALTSFKPLLNNDTSRAGKY-----LVGDQDMESEFL 62
           A    IPT A+ I+ LL NPT C+          N+T+    Y     LVGD+ ++SEFL
Sbjct: 2   ATTFSIPTMAILILTLLFNPTRCNTTV-------NETTSEWCYGSENCLVGDESLDSEFL 61

Query: 63  MESHITRILASSQNFQTTSTTDANKASGGGCGRPPRYDSCLGQKRNNPPPENCGTFNRVN 119
           ME+  +R+L   QN QT  T D N+ S   CGRPPRYDSC G++R  P PENC   NR N
Sbjct: 62  METETSRMLLDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRAN 116

The following BLAST results are available for this feature:

BLAST of Cla013231 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCJ4_CUCSA	4.9e-43	71.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1	[more]
A0A0A0L711_CUCSA	4.6e-33	58.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1	[more]
A0A0A0L9X5_CUCSA	4.6e-25	55.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1	[more]
A0A0A0KVZ2_CUCSA	2.0e-20	46.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1	[more]
A0A0A0KW62_CUCSA	3.0e-16	47.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1	[more]

BLAST of Cla013231 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202648\|gb\|KGN57781.1\|	7.0e-43	71.43	hypothetical protein Csa_3G298580 [Cucumis sativus]	[more]
gi\|778680757\|ref\|XP_011651393.1\|	6.5e-33	58.97	PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus]	[more]
gi\|659114334\|ref\|XP_008457017.1\|	9.8e-29	56.30	PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo]	[more]
gi\|700202646\|gb\|KGN57779.1\|	6.5e-25	55.08	hypothetical protein Csa_3G298070 [Cucumis sativus]	[more]
gi\|700198642\|gb\|KGN53800.1\|	2.8e-20	46.72	hypothetical protein Csa_4G131140 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013231	Cla013231.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla013231	Lsi05G003680	Bottle gourd (USVL1VR-Ls)	lsiwmB361
Cla013231	CsaV3_3G020900	Cucumber (Chinese Long) v3	cucwmB245

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013231	Cucurbita maxima (Rimu)	cmawmB243
Cla013231	Cucurbita maxima (Rimu)	cmawmB434
Cla013231	Cucurbita moschata (Rifu)	cmowmB232
Cla013231	Cucurbita moschata (Rifu)	cmowmB427
Cla013231	Melon (DHL92) v3.5.1	mewmB461
Cla013231	Melon (DHL92) v3.5.1	mewmB474
Cla013231	Watermelon (Charleston Gray)	wcgwmB286
Cla013231	Cucumber (Chinese Long) v2	cuwmB239
Cla013231	Cucumber (Chinese Long) v2	cuwmB245
Cla013231	Cucurbita pepo (Zucchini)	cpewmB568
Cla013231	Cucurbita pepo (Zucchini)	cpewmB614
Cla013231	Cucumber (Gy14) v2	cgybwmB223
Cla013231	Cucumber (Gy14) v2	cgybwmB232
Cla013231	Melon (DHL92) v3.6.1	medwmB448
Cla013231	Melon (DHL92) v3.6.1	medwmB462
Cla013231	Silver-seed gourd	carwmB0476
Cla013231	Silver-seed gourd	carwmB0760
Cla013231	Cucumber (Chinese Long) v3	cucwmB254
Cla013231	Watermelon (97103) v2	wmwmbB206
Cla013231	Wax gourd	wgowmB215
Cla013231	Cucumber (Gy14) v1	cgywmB004