CsaV3_3G020900 (gene) Cucumber (Chinese Long) v3

NameCsaV3_3G020900
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 17279108 .. 17279416 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTTGGGAAACGTCTGATTGGAGATATCGACACCGATTTTCTAATGGAGTCGCATGTGAGTCGAATTTTAGCCGAGCTAAGGTTCGAAACAATGAGAACTCCAAATGCAAACTCTGCATCGGTGGTCAATTGTGAACGGCCGCCACGCTATGATAGTTGCCTCGGCGAAGCAAGGGATAATCCTCCATCGGAGAACTGTGACCCTTACAACCGCGCCAATCCCTGTTAAGTTATGAGAAAAAAAGAATAAAAAGGTCTGACAACTTCATTTTACATTAAGAATAAATGTAATCAACACCCATATACAG

mRNA sequence

CTTGGGAAACGTCTGATTGGAGATATCGACACCGATTTTCTAATGGAGTCGCATGTGAGTCGAATTTTAGCCGAGCTAAGGTTCGAAACAATGAGAACTCCAAATGCAAACTCTGCATCGGTGGTCAATTGTGAACGGCCGCCACGCTATGATAGTTGCCTCGGCGAAGCAAGGGATAATCCTCCATCGGAGAACTGTGACCCTTACAACCGCGCCAATCCCTGTTAA

Coding sequence (CDS)

CTTGGGAAACGTCTGATTGGAGATATCGACACCGATTTTCTAATGGAGTCGCATGTGAGTCGAATTTTAGCCGAGCTAAGGTTCGAAACAATGAGAACTCCAAATGCAAACTCTGCATCGGTGGTCAATTGTGAACGGCCGCCACGCTATGATAGTTGCCTCGGCGAAGCAAGGGATAATCCTCCATCGGAGAACTGTGACCCTTACAACCGCGCCAATCCCTGTTAA

Protein sequence

LGKRLIGDIDTDFLMESHVSRILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC
BLAST of CsaV3_3G020900 vs. NCBI nr
Match: KGN57779.1 (hypothetical protein Csa_3G298070 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 1.6e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1   LGKRLIGDIDTDFLMESHVSRILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDN 60
           LGKRLIGDIDTDFLMESHVSRILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDN
Sbjct: 40  LGKRLIGDIDTDFLMESHVSRILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDN 99

Query: 61  PPSENCDPYNRANPC 76
           PPSENCDPYNRANPC
Sbjct: 100 PPSENCDPYNRANPC 114

BLAST of CsaV3_3G020900 vs. NCBI nr
Match: XP_022998176.1 (uncharacterized protein LOC111492901 [Cucurbita maxima])

HSP 1 Score: 130.2 bits (326), Expect = 3.0e-27
Identity = 61/78 (78.21%), Postives = 70/78 (89.74%), Query Frame = 0

Query: 2   GKRLIG-DIDTDFLMESHVSRILA---ELRFETMRTPNANSASVVNCERPPRYDSCLGEA 61
           GK +IG DIDT+FLMESH+SR+LA   ELRFETMR+PN N ASVV+CERPPRYDSCLGE 
Sbjct: 41  GKHVIGDDIDTEFLMESHISRVLAEEDELRFETMRSPNPNIASVVDCERPPRYDSCLGEG 100

Query: 62  RDNPPSENCDPYNRANPC 76
           ++NPPSENCDP+NRANPC
Sbjct: 101 KNNPPSENCDPFNRANPC 118

BLAST of CsaV3_3G020900 vs. NCBI nr
Match: XP_022948337.1 (uncharacterized protein LOC111452043 [Cucurbita moschata])

HSP 1 Score: 128.6 bits (322), Expect = 8.8e-27
Identity = 60/78 (76.92%), Postives = 70/78 (89.74%), Query Frame = 0

Query: 2   GKRLIG-DIDTDFLMESHVSRILA---ELRFETMRTPNANSASVVNCERPPRYDSCLGEA 61
           GK +IG DIDT+FLMESH+SR+LA   ELRFETMR+PN N ASVV+CERPPR+DSCLGE 
Sbjct: 41  GKHVIGDDIDTEFLMESHISRVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEG 100

Query: 62  RDNPPSENCDPYNRANPC 76
           ++NPPSENCDP+NRANPC
Sbjct: 101 KNNPPSENCDPFNRANPC 118

BLAST of CsaV3_3G020900 vs. NCBI nr
Match: XP_022143399.1 (uncharacterized protein LOC111013278 [Momordica charantia])

HSP 1 Score: 112.1 bits (279), Expect = 8.5e-22
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 0

Query: 3   KRLIG--DIDTDFLMESHVSRILAE-LRFETMRTPNANSASVVNCERPPRYDSCLGEARD 62
           KRLIG  DI ++FLME H+SRILAE LRF+TM TPNAN  SV +CERPPRYDSCLGE R+
Sbjct: 43  KRLIGDEDIGSEFLMELHLSRILAESLRFQTMTTPNANMGSVRDCERPPRYDSCLGEKRN 102

Query: 63  NPPSENCDPYNRANPC 76
            PP+ENC  +NRANPC
Sbjct: 103 TPPAENCGTFNRANPC 118

BLAST of CsaV3_3G020900 vs. NCBI nr
Match: XP_022998105.1 (uncharacterized protein LOC111492854 [Cucurbita maxima])

HSP 1 Score: 99.0 bits (245), Expect = 7.4e-18
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 2   GKRLIG--DIDTDFLMESHVSRILAELR-FETMRTPNANSASVVNCERPPRYDSCLGEAR 61
           GK LIG  DID++FLMESH+SRILA  + F+T +T +AN AS   CERPPRYDSCLG+  
Sbjct: 41  GKYLIGDQDIDSEFLMESHISRILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKS 100

Query: 62  DNPPSENCDPYNRANPC 76
           +NPP ENC  +NR NPC
Sbjct: 101 NNPPPENCGTFNRNNPC 117

BLAST of CsaV3_3G020900 vs. TrEMBL
Match: tr|A0A0A0L9X5|A0A0A0L9X5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298070 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1   LGKRLIGDIDTDFLMESHVSRILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDN 60
           LGKRLIGDIDTDFLMESHVSRILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDN
Sbjct: 40  LGKRLIGDIDTDFLMESHVSRILAELRFETMRTPNANSASVVNCERPPRYDSCLGEARDN 99

Query: 61  PPSENCDPYNRANPC 76
           PPSENCDPYNRANPC
Sbjct: 100 PPSENCDPYNRANPC 114

BLAST of CsaV3_3G020900 vs. TrEMBL
Match: tr|A0A0A0LCJ4|A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.9e-16
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 0

Query: 2   GKRLIG--DIDTDFLMESHVSRILAELR-FETMRTPNANSASVVNCERPPRYDSCLGEAR 61
           GK ++G  D++ +FLMESH+SRILA  + ++T  T NAN AS   C+RPPRYDSCLG+ R
Sbjct: 43  GKLMMGEEDMELEFLMESHISRILASSKNYQTASTTNANKASGGGCDRPPRYDSCLGKKR 102

Query: 62  DNPPSENCDPYNRANPC 76
           +     NC PYNRANPC
Sbjct: 103 NXXXXPNCSPYNRANPC 119

BLAST of CsaV3_3G020900 vs. TrEMBL
Match: tr|A0A0A0L711|A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.3e-14
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 8   DIDTDFLMESHVSRILAELR-FETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENC 67
           DI ++F+MESH+SR+LA+ + FET  T NA   S   C+RPPRYDSCLG  R+ PP +NC
Sbjct: 52  DIKSNFVMESHISRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNC 111

Query: 68  DPYNRANPC 76
             +NR +PC
Sbjct: 112 STFNREHPC 120

BLAST of CsaV3_3G020900 vs. TrEMBL
Match: tr|A0A0A0KVZ2|A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 41/76 (53.95%), Postives = 51/76 (67.11%), Query Frame = 0

Query: 5   LIGD--IDTDFLMESHVSRILAELRFETMRTP---NANSASVVNCERPPRYDSCLGEARD 64
           L+GD  +D++FLME+  SR+L  L F+ ++TP   + N  SV  C RPPRYDSC GE R 
Sbjct: 43  LVGDESLDSEFLMETETSRML--LDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQ 102

Query: 65  NPPSENCDPYNRANPC 76
            P  ENCD  NRANPC
Sbjct: 103 IPNPENCDVRNRANPC 116

BLAST of CsaV3_3G020900 vs. TrEMBL
Match: tr|A0A0A0KW62|A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.3e-09
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 0

Query: 5   LIGDID--TDFLMESHVSRILAE--LRFETMRTPNANSASVVNCERPPRYDSCLGEARDN 64
           L+GD++  ++FLM +  S +L +  L F+T +  +AN  SV +C RPPRYDSCLG  R  
Sbjct: 53  LVGDLNSHSEFLMLTESSGMLVDQFLTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSI 112

Query: 65  PPSENCDPYNRANPC 76
           P  E C   NR NPC
Sbjct: 113 PNPEPCSTLNRVNPC 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN57779.11.6e-36100.00hypothetical protein Csa_3G298070 [Cucumis sativus][more]
XP_022998176.13.0e-2778.21uncharacterized protein LOC111492901 [Cucurbita maxima][more]
XP_022948337.18.8e-2776.92uncharacterized protein LOC111452043 [Cucurbita moschata][more]
XP_022143399.18.5e-2272.37uncharacterized protein LOC111013278 [Momordica charantia][more]
XP_022998105.17.4e-1863.64uncharacterized protein LOC111492854 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L9X5|A0A0A0L9X5_CUCSA1.1e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298070 PE=4 SV=1[more]
tr|A0A0A0LCJ4|A0A0A0LCJ4_CUCSA7.9e-1657.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298580 PE=4 SV=1[more]
tr|A0A0A0L711|A0A0A0L711_CUCSA7.3e-1455.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1[more]
tr|A0A0A0KVZ2|A0A0A0KVZ2_CUCSA1.2e-1153.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131140 PE=4 SV=1[more]
tr|A0A0A0KW62|A0A0A0KW62_CUCSA9.3e-0946.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G130630 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G020900.1CsaV3_3G020900.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..75