CmoCh01G003960 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G003960
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr01 : 1950847 .. 1951415 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCGCCGTCGTCTTCCGTTACCGCCACCACCATGGCTGCAACTATGCCAATGAAACCCACCACCATAGCGGTCGTGATTTTGCTGCTCGTCTCGACCGGTTGCGATGCTTTTGCACTTACCAAACCACTTTTCAACCACACCCAAGGTGAGTTAATTTGCTATTCAAAAATTTGAAAATCCTAAAACCTTTTATGTTTATAGTAAAAGTAGTGTCTTGAATGCCATAGGTCCCGGAAAACACGTCATCGGAGACGATATCGACACCGAGTTTCTTATGGAATCGCATATTAGTAGGGTACTTGCGGAGGAGGATGAGCTTAGGTTTGAAACCATGAGGAGCCCTAACCCCAACATTGCATCGGTGGTCGACTGCGAACGACCGCCACGCTTCGACAGTTGCCTCGGCGAAGGAAAGAACAATCCGCCGTCCGAAAACTGCGATCCCTTCAATCGGGCTAATCCTTGTTGATTAGAATGAAATGAAGAAGAATAAGTAGATATGTTGTTTGGGGTTTACAGCATTTTTAAGGAATTAATAATGTAATGAACACATATTTAGTGCTCAC

mRNA sequence

CTTCCGCCGTCGTCTTCCGTTACCGCCACCACCATGGCTGCAACTATGCCAATGAAACCCACCACCATAGCGGTCGTGATTTTGCTGCTCGTCTCGACCGGTTGCGATGCTTTTGCACTTACCAAACCACTTTTCAACCACACCCAAGGTCCCGGAAAACACGTCATCGGAGACGATATCGACACCGAGTTTCTTATGGAATCGCATATTAGTAGGGTACTTGCGGAGGAGGATGAGCTTAGGTTTGAAACCATGAGGAGCCCTAACCCCAACATTGCATCGGTGGTCGACTGCGAACGACCGCCACGCTTCGACAGTTGCCTCGGCGAAGGAAAGAACAATCCGCCGTCCGAAAACTGCGATCCCTTCAATCGGGCTAATCCTTGTTGATTAGAATGAAATGAAGAAGAATAAGTAGATATGTTGTTTGGGGTTTACAGCATTTTTAAGGAATTAATAATGTAATGAACACATATTTAGTGCTCAC

Coding sequence (CDS)

ATGGCTGCAACTATGCCAATGAAACCCACCACCATAGCGGTCGTGATTTTGCTGCTCGTCTCGACCGGTTGCGATGCTTTTGCACTTACCAAACCACTTTTCAACCACACCCAAGGTCCCGGAAAACACGTCATCGGAGACGATATCGACACCGAGTTTCTTATGGAATCGCATATTAGTAGGGTACTTGCGGAGGAGGATGAGCTTAGGTTTGAAACCATGAGGAGCCCTAACCCCAACATTGCATCGGTGGTCGACTGCGAACGACCGCCACGCTTCGACAGTTGCCTCGGCGAAGGAAAGAACAATCCGCCGTCCGAAAACTGCGATCCCTTCAATCGGGCTAATCCTTGTTGA

Homology

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BLAST of CmoCh01G003960 vs. TrEMBL
Match: A0A0A0L9X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.0e-37
Identity = 80/117 (68.38%), Postives = 99/117 (84.62%), Query Frame = 1


Query: 2   AATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHISR 61
           AAT+ ++ TT+A+V LLLV+ GCDAF  +KP+FN +   GK +IGD IDT+FLMESH+SR
Sbjct: 3   AATLSIR-TTLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLIGD-IDTDFLMESHVSR 62

Query: 62  VLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC 119
           +LAE   LRFETMR+PN N ASVV+CERPPR+DSCLGE ++NPPSENCDP+NRANPC
Sbjct: 63  ILAE---LRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

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BLAST of CmoCh01G003960 vs. TrEMBL
Match: A0A0A0LCJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-21
Identity = 59/121 (48.76%), Postives = 80/121 (66.12%), Query Frame = 1


Query: 1   MAATMPMKPTTIAVVILLL-VSTGCDAFALTKPLF-NHTQGPGKHVIGD-DIDTEFLMES 60
           M A+  M P  +  +ILLL + + CDA    +PL  NH+   GK ++G+ D++ EFLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HISRVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANP 119
           HISR+LA      ++T  + N N AS   C+RPPR+DSCLG+ +NNPP  NC P+NRANP
Sbjct: 61  HISRILASSK--NYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANP 119

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BLAST of CmoCh01G003960 vs. TrEMBL
Match: A0A0A0L711_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.1e-18
Identity = 57/122 (46.72%), Postives = 80/122 (65.57%), Query Frame = 1


Query: 3   ATMP--MKPTTIAVVILLLVSTGCDAFALT--KPLFNHTQGP-GKHVIGD-DIDTEFLME 62
           AT P  M P  +A+++++L+ T C   ALT  KPL NHT G   K+++ + DI + F+ME
Sbjct: 2   ATAPALMIPAAMAMMLMMLIPTACGG-ALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVME 61

Query: 63  SHISRVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRAN 119
           SHISR+LA+  +  FET  + N    S  +C+RPPR+DSCLG  +N PP +NC  FNR +
Sbjct: 62  SHISRMLADSQD--FETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREH 120

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BLAST of CmoCh01G003960 vs. TrEMBL
Match: A0A0A0KVZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-12
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = 1


Query: 1   MAATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDD-IDTEFLMESHI 60
           MA T  +    I ++ LL   T C+   + +       G    ++GD+ +D+EFLME+  
Sbjct: 1   MATTFSIPTMAILILTLLFNPTRCNT-TVNETTSEWCYGSENCLVGDESLDSEFLMETET 60

Query: 61  SRVLAEEDELRFETMRSP---NPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRAN 119
           SR+L     L F+ +++P   +PN  SV +C RPPR+DSC GE +  P  ENCD  NRAN
Sbjct: 61  SRML-----LDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRAN 116

[Close]

BLAST of CmoCh01G003960 vs. TrEMBL
Match: A0A0A0KW62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08
Identity = 45/120 (37.50%), Postives = 66/120 (55.00%), Query Frame = 1


Query: 1   MAATMPMKPTTIAVVILLLVSTGCDA-FALTKPLFNHTQGPGKHVIGD-DIDTEFLMESH 60
           MAAT+ M      + ILLL     +A    T+  +  + G    ++GD +  +EFLM + 
Sbjct: 9   MAATLTMPSMAFLITILLLNPIISNAGMNDTESKWCDSTGLENCLVGDLNSHSEFLMLTE 68

Query: 61  ISRVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC 119
            S +L ++  L F+T ++ + N  SV DC RPPR+DSCLG  ++ P  E C   NR NPC
Sbjct: 69  SSGMLVDQF-LTFQTPKANDANKESVPDCSRPPRYDSCLGSKRSIPNPEPCSTLNRVNPC 127

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BLAST of CmoCh01G003960 vs. NCBI nr
Match: gi|700202646|gb|KGN57779.1| (hypothetical protein Csa_3G298070 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 5.7e-37
Identity = 80/117 (68.38%), Postives = 99/117 (84.62%), Query Frame = 1


Query: 2   AATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDDIDTEFLMESHISR 61
           AAT+ ++ TT+A+V LLLV+ GCDAF  +KP+FN +   GK +IGD IDT+FLMESH+SR
Sbjct: 3   AATLSIR-TTLAIVTLLLVAVGCDAFIASKPVFNLSSDLGKRLIGD-IDTDFLMESHVSR 62

Query: 62  VLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANPC 119
           +LAE   LRFETMR+PN N ASVV+CERPPR+DSCLGE ++NPPSENCDP+NRANPC
Sbjct: 63  ILAE---LRFETMRTPNANSASVVNCERPPRYDSCLGEARDNPPSENCDPYNRANPC 114

[Close]

BLAST of CmoCh01G003960 vs. NCBI nr
Match: gi|700202648|gb|KGN57781.1| (hypothetical protein Csa_3G298580 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 2.0e-21
Identity = 59/121 (48.76%), Postives = 80/121 (66.12%), Query Frame = 1


Query: 1   MAATMPMKPTTIAVVILLL-VSTGCDAFALTKPLF-NHTQGPGKHVIGD-DIDTEFLMES 60
           M A+  M P  +  +ILLL + + CDA    +PL  NH+   GK ++G+ D++ EFLMES
Sbjct: 1   MGASALMIPAAVVTMILLLHIPSSCDALTTFQPLLSNHSSYGGKLMMGEEDMELEFLMES 60

Query: 61  HISRVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRANP 119
           HISR+LA      ++T  + N N AS   C+RPPR+DSCLG+ +NNPP  NC P+NRANP
Sbjct: 61  HISRILASSK--NYQTASTTNANKASGGGCDRPPRYDSCLGKKRNNPPPPNCSPYNRANP 119

[Close]

BLAST of CmoCh01G003960 vs. NCBI nr
Match: gi|659114334|ref|XP_008457017.1| (PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-18
Identity = 55/122 (45.08%), Postives = 76/122 (62.30%), Query Frame = 1


Query: 3   ATMP--MKPTTIAVVILLLVSTGCD-AFALTKPLFNHTQGP---GKHVIGDDIDTEFLME 62
           AT P  M P  +A++I++L+ T C  AF   KPL NHT G       V  +D  + F+ME
Sbjct: 2   ATAPAVMIPAAVAMMIMMLIPTACGGAFTFFKPLNNHTSGGLVRYNMVEEEDTKSNFVME 61

Query: 63  SHISRVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRAN 119
           SHISR+LA+  +  FET  + N    S  +C+RPPR+DSCLG+ +N PP +NC  +NR +
Sbjct: 62  SHISRMLADSSQ-DFETSSTNNATQVSTGECDRPPRYDSCLGDKRNTPPPQNCSTYNREH 121

[Close]

BLAST of CmoCh01G003960 vs. NCBI nr
Match: gi|778680757|ref|XP_011651393.1| (PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 5.9e-18
Identity = 57/122 (46.72%), Postives = 80/122 (65.57%), Query Frame = 1


Query: 3   ATMP--MKPTTIAVVILLLVSTGCDAFALT--KPLFNHTQGP-GKHVIGD-DIDTEFLME 62
           AT P  M P  +A+++++L+ T C   ALT  KPL NHT G   K+++ + DI + F+ME
Sbjct: 2   ATAPALMIPAAMAMMLMMLIPTACGG-ALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVME 61

Query: 63  SHISRVLAEEDELRFETMRSPNPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRAN 119
           SHISR+LA+  +  FET  + N    S  +C+RPPR+DSCLG  +N PP +NC  FNR +
Sbjct: 62  SHISRMLADSQD--FETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREH 120

[Close]

BLAST of CmoCh01G003960 vs. NCBI nr
Match: gi|700198642|gb|KGN53800.1| (hypothetical protein Csa_4G131140 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 3.7e-12
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = 1


Query: 1   MAATMPMKPTTIAVVILLLVSTGCDAFALTKPLFNHTQGPGKHVIGDD-IDTEFLMESHI 60
           MA T  +    I ++ LL   T C+   + +       G    ++GD+ +D+EFLME+  
Sbjct: 1   MATTFSIPTMAILILTLLFNPTRCNT-TVNETTSEWCYGSENCLVGDESLDSEFLMETET 60

Query: 61  SRVLAEEDELRFETMRSP---NPNIASVVDCERPPRFDSCLGEGKNNPPSENCDPFNRAN 119
           SR+L     L F+ +++P   +PN  SV +C RPPR+DSC GE +  P  ENCD  NRAN
Sbjct: 61  SRML-----LDFQNLQTPGTIDPNRQSVAECGRPPRYDSCTGEERQIPNPENCDVRNRAN 116

The following BLAST results are available for this feature:

BLAST of CmoCh01G003960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G003960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9X5_CUCSA	4.0e-37	68.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298070 PE=4 SV=1	[more]
A0A0A0LCJ4_CUCSA	1.4e-21	48.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298580 PE=4 SV=1	[more]
A0A0A0L711_CUCSA	4.1e-18	46.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G298570 PE=4 SV=1	[more]
A0A0A0KVZ2_CUCSA	2.6e-12	39.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131140 PE=4 SV=1	[more]
A0A0A0KW62_CUCSA	3.0e-08	37.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G130630 PE=4 SV=1	[more]

BLAST of CmoCh01G003960 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh01G003960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202646\|gb\|KGN57779.1\|	5.7e-37	68.38	hypothetical protein Csa_3G298070 [Cucumis sativus]	[more]
gi\|700202648\|gb\|KGN57781.1\|	2.0e-21	48.76	hypothetical protein Csa_3G298580 [Cucumis sativus]	[more]
gi\|659114334\|ref\|XP_008457017.1\|	1.6e-18	45.08	PREDICTED: uncharacterized protein LOC103496797 [Cucumis melo]	[more]
gi\|778680757\|ref\|XP_011651393.1\|	5.9e-18	46.72	PREDICTED: uncharacterized protein LOC105434882 [Cucumis sativus]	[more]
gi\|700198642\|gb\|KGN53800.1\|	3.7e-12	39.34	hypothetical protein Csa_4G131140 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G003960.1	CmoCh01G003960.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G003960	CmaCh01G003790	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G003960	Cla013230	Watermelon (97103) v1	cmowmB427
CmoCh01G003960	Csa3G298070	Cucumber (Chinese Long) v2	cmocuB442
CmoCh01G003960	MELO3C020218	Melon (DHL92) v3.5.1	cmomeB421
CmoCh01G003960	ClCG05G011610	Watermelon (Charleston Gray)	cmowcgB406
CmoCh01G003960	Lsi05G003680	Bottle gourd (USVL1VR-Ls)	cmolsiB430
CmoCh01G003960	Cp4.1LG02g16980	Cucurbita pepo (Zucchini)	cmocpeB449
CmoCh01G003960	MELO3C020218.2	Melon (DHL92) v3.6.1	cmomedB483
CmoCh01G003960	CsaV3_3G020900	Cucumber (Chinese Long) v3	cmocucB0532
CmoCh01G003960	Cla97C05G093660	Watermelon (97103) v2	cmowmbB454
CmoCh01G003960	Bhi01G001476	Wax gourd	cmowgoB0559
CmoCh01G003960	CsGy3G020560	Cucumber (Gy14) v2	cgybcmoB339
CmoCh01G003960	Carg07463	Silver-seed gourd	carcmoB1033

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G003960	Cucurbita pepo (Zucchini)	cmocpeB453
CmoCh01G003960	Silver-seed gourd	carcmoB0651
CmoCh01G003960	Cucurbita moschata (Rifu)	cmocmoB203
CmoCh01G003960	Cucumber (Gy14) v1	cgycmoB0010
CmoCh01G003960	Cucurbita maxima (Rimu)	cmacmoB257
CmoCh01G003960	Wild cucumber (PI 183967)	cmocpiB446