Lsi05G001870 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G001870
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	zinc ion binding
Location	chr05 : 2655382 .. 2658831 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCTAACAAAATCCAATTTACGAAAAGGAATAACTTTCCAATCACTTCTCTTTCTCCTTTTTTTGTATAAAATCCCCCTGTTTTTCCTTTCTAAACACAAGAATAATCCATACCTTCAATTTCGTAGAATATGTCAATGAGTCAAAACCCTCGACCTCGAATCGTCGTCAATGGCGGCTTCCCGAGGACGACCACCATGCATTACTACTGGTGCCGAATTTGTCGAAGAATTATCAGAATTAGCTTAGGAAACCCTTTAGAAATTTCCATTACTTGCCCTTTTTGCTCCAGAAATCTCCGTCATGAATTGGACGTAGCTAGGGCTCGAAATTTCCCTCGTCTCCCCAATTTAGCTGCTGGAAATCGCACGATTTCCCCCCCGATTGTCCCTCTGTGGGGATTCGAAGCCGATGAGTCTTGGATCACGCTCCGATTCTCCAGACCAGAGGCCAATTCCGGGATTGAGGCGATTCCGAGGGTGAAAATTACGAGGTATCATTTGGAGAAGGATTCGAATTGTGCGATTTGTAAAGAGGAATTTGAAATGGGAGGGGAAGTAAGGGAGTTGCCTTGCAAGCATTTCTACCATTCGGATTGTGTTGTTCCTTGGTTGAGGATCCATAATACTTGCCCTGTTTGCCGGTATACGTTGGAGAATATCGTCGCTGCTGACGGCGAGGGGAGTGGGAGTGGTTTTAATGGCGGAATGGTTGAGGAATTAGGAGAAGAAGAAGGAGATGGAGAAGGAAGAGGGAATGGAGGGTGGTGGAACTTGGTGTGTTGTTGGTGGCCACTCCGTTTAATCGCCGATTGGGCTCGCCGCCTCCGGTTTGCTGATTCCGGTGATAGTTTCTTCATCGTTGAACGTAAGATTTTTTATTTTGAAGTTTCTTCATCTATGGATGAAGTTAGGAAGAAAAGAAAAAACTATTTTTTTGATGATCAAAATGAATGGTTGAAATTATTACAAATTACAATTAGGTTAATTTACACCTTTAGGATTTTGGCCCTGAAACTTTCAAAATTACAAATTTAACTTTTTTTTTTTTTTTTTTTTTAATTTACGAACATGTTAGACACAACATTGAAAGTTTAGAACTTCATTACACATCAAATTTAAATATTTATCTAATAGATTCATAACTAAACGTATAATTTAACAAAAAAAATTTAAAATCCTATTTGGATTCCTAAAATTTGAGAGTTTTCAATTTTTCTATATTTTCAAATATCTACTTTCAATTCATCTACTTTCTCCCCGATTGATTTTTACAAAATCTTTTAATGTCCATTAACATTTTCACCATAAAATTTGGAAATATTGTACATATTATATTTTCTAAAATGAAAATTATTATTATTATTAAAAAATTGAAATTTAAGATTTATTGAGAGAAAATCTTTAAAAATAGAAAAATAAGAAAAACTATTTACACAAAATAACAATTTTGTTTAGATAGTTGCAATAGACGAGTCTATCAGAGTCCATCAAAGACAGAAATGATAGAAGTCTATCAAGATCTATCAATGATAGAAATGATAAAAGTCTCACCGATAGATGTTTATAGAAATCATCAATATTTTTTTTTTTTTGCTTTTTTCTGTAAATAGTTTGACATTTTTTTATCGGTAAAAATTCCTTTTATTTGAAAGTATATGGACATGGACTAAAATTGAACAAACCAATTATTAAAAAAAGAAATCCAAAGAAGTGACAAAATTCCATGAAGATCCTTGCTTGACAACTGGATTTAAAATGACAAAATAGACCATCAAAATCAAACTAGTCAACTTAGAAGGACAAAATTGAGCATCAAAATCAAACTAGTCTAGTCAAAACTCAAATCCACAAAAATATAAGTAAATTACAACTCAAACATACAAAAATTTTAAATTATACATTATTAAAAAGAAAAATTATTATTAAAAAGAAAAATTTACTAAATCTAAATATTTAAATATAATGTTAATGGGTACTGGTTGGAGATTGCAGCAGGCTCATGGATGTACTCTTGGCTTGCTAATTAACCCACACCTAGGTAATATGTACTACTTTACTCTTTTATTTATTTCTTAACCAATTGAATTAATATTACATTAATGAAAGCCATTTGAAATGAAGCTGTGTATTGTAGTGTATGTAATGTAACAAGCATTTTGCTTTCTTATTCAATTTCTTTCTTGTAATTAGCAAAATTGCAGACAGTCAAAAGGAACCTTCTTTCAGGACTGTACAGCTTACCTGAATAACTAAGAAAACAACACTATATAATTCCTTTTGAGGTCTGCAACTTCAATCTCTCATTTCATAATTTATATTACTAAAACATATAGAGACCCAAGCAGGAGGAGTTGGTTCCCTTTGGAAAACAACATCCCTATTTCCTATGTAGAGTTAAGATAGAGGGAAATATCACCTTCTGTCTTCTTCTTCTTCTTCTTCTTCAGACTCTCTATACTGACTTTCTTTGTGTTTTGAGGGGTGAAAAAGACCTGTTTGTTTTTAGACTTGTTTGCAGAGGCAGTAGAACCAAAAACGAGTTTCCAATCCGATCGTATTCTTCAGATTATGTAGGCGATAGATGTAAATGTTCAAGATGTAGGAGAGTGGCCAAGACTCATGATTTTTTAATCCTACAAAGATGAGAAGGGAATGAGTTGTAATTTGATAGATATAAATGAATTGATTCTGTGCTAAGAAATGTGTATACCACATGCTTTCAACTCTATAATCTAACAAAATATGTCAAAGCTTACATGATCTGGATGTGACAAATCTTCCTTTGTCCGCCCTGGTTTGGAGCGAAAATAAGGCTTGGGTTTAGGTAACAGATCAGGGGGCAACAGCGGTGAAAACTCTACCGGAGATGCACGTGGAGAAGAAACCCGAGGTTGTTCAGCCGGAGGAACGATCAGTCTTGTAGACTTTGGATAGGAGATTGGAGGTATTGAATGTTCGTGAGGGGAATGTGCAGGAACCATAGAAGGGGTTGGAGACGAGGTTTCACAATTTGTATGAGGTGGGGAATGATTTGCAGGTGGTCGTGCGGATCTTGATGGATGTGGGACACTCGGTAGTTCTACATGATCACCAGGCGCTGGCGCAGGAGCTGGAGAAAAACTCGGTGGCATTGCCTTGGAGGGTCTCTTCGGATAAGAAGACAAACTGACACTCTTTACTTCTCCAAAAAGAGAATAATCAAGGCCAAGATTTCTTTCAGGAGAGGTGTTGATGATTGCAGCCAACTGTTGTAATCTCTGTGATGTTATGCGTCCCAATTCCGACGTGATAGAAGCCTGAACAATTACGAGTGGTTGCATCGTCGAGCCAATCTTGTTTGTTATTTGCAAATACACATTCTGTATAACAAGAAAAGAAAGAGTGGAATTCAACATCCATTAATCAAATCCAGTCCCAGATACATAAAACTAACAACAATTAACTTAAA

mRNA sequence

CTGCTAACAAAATCCAATTTACGAAAAGGAATAACTTTCCAATCACTTCTCTTTCTCCTTTTTTTGTATAAAATCCCCCTGTTTTTCCTTTCTAAACACAAGAATAATCCATACCTTCAATTTCGTAGAATATGTCAATGAGTCAAAACCCTCGACCTCGAATCGTCGTCAATGGCGGCTTCCCGAGGACGACCACCATGCATTACTACTGGTGCCGAATTTGTCGAAGAATTATCAGAATTAGCTTAGGAAACCCTTTAGAAATTTCCATTACTTGCCCTTTTTGCTCCAGAAATCTCCGTCATGAATTGGACGTAGCTAGGGCTCGAAATTTCCCTCGTCTCCCCAATTTAGCTGCTGGAAATCGCACGATTTCCCCCCCGATTGTCCCTCTGTGGGGATTCGAAGCCGATGAGTCTTGGATCACGCTCCGATTCTCCAGACCAGAGGCCAATTCCGGGATTGAGGCGATTCCGAGGGTGAAAATTACGAGGTATCATTTGGAGAAGGATTCGAATTGTGCGATTTGTAAAGAGGAATTTGAAATGGGAGGGGAAGTAAGGGAGTTGCCTTGCAAGCATTTCTACCATTCGGATTGTGTTGTTCCTTGGTTGAGGATCCATAATACTTGCCCTGTTTGCCGGTATACGTTGGAGAATATCGTCGCTGCTGACGGCGAGGGGAGTGGGAGTGGTTTTAATGGCGGAATGGTTGAGGAATTAGGAGAAGAAGAAGGAGATGGAGAAGGAAGAGGGAATGGAGGGTGGTGGAACTTGGTGTGTTGTTGGTGGCCACTCCGTTTAATCGCCGATTGGGCTCGCCGCCTCCGGTTTGCTGATTCCGGTGATAGTTTCTTCATCGTTGAACCAGGCTCATGGATGTACTCTTGGCTTGCTAATTAACCCACACCTAGCAAAATTGCAGACAGTCAAAAGGAACCTTCTTTCAGGACTGTACAGCTTACCTGAATAACTAAGAAAACAACACTATATAATTCCTTTTGAGACCTGTTTGTTTTTAGACTTGTTTGCAGAGGCAGTAGAACCAAAAACGAGTTTCCAATCCGATCGTATTCTTCAGATTATGTAGGCGATAGATGTAAATGTTCAAGATGTAGGAGAGTGGCCAAGACTCATGATTTTTTAATCCTACAAAGATGAGAAGGGAATGAGTTGTAATTTGATAGATATAAATGAATTGATTCTGTGCTAAGAAATGTGTATACCACATGCTTTCAACTCTATAATCTAACAAAATATGTCAAAGCTTACATGATCTGGATGTGACAAATCTTCCTTTGTCCGCCCTGGTTTGGAGCGAAAATAAGGCTTGGGTTTAGGTAACAGATCAGGGGGCAACAGCGGTGAAAACTCTACCGGAGATGCACGTGGAGAAGAAACCCGAGGTTGTTCAGCCGGAGGAACGATCAGTCTTGTAGACTTTGGATAGGAGATTGGAGGTATTGAATGTTCGTGAGGGGAATGTGCAGGAACCATAGAAGGGGTTGGAGACGAGGTTTCACAATTTGTATGAGGTGGGGAATGATTTGCAGGTGGTCGTGCGGATCTTGATGGATGTGGGACACTCGGTAGTTCTACATGATCACCAGGCGCTGGCGCAGGAGCTGGAGAAAAACTCGGTGGCATTGCCTTGGAGGGTCTCTTCGGATAAGAAGACAAACTGACACTCTTTACTTCTCCAAAAAGAGAATAATCAAGGCCAAGATTTCTTTCAGGAGAGGTGTTGATGATTGCAGCCAACTGTTGTAATCTCTGTGATGTTATGCGTCCCAATTCCGACGTGATAGAAGCCTGAACAATTACGAGTGGTTGCATCGTCGAGCCAATCTTGTTTGTTATTTGCAAATACACATTCTGTATAACAAGAAAAGAAAGAGTGGAATTCAACATCCATTAATCAAATCCAGTCCCAGATACATAAAACTAACAACAATTAACTTAAA

Coding sequence (CDS)

ATGTCAATGAGTCAAAACCCTCGACCTCGAATCGTCGTCAATGGCGGCTTCCCGAGGACGACCACCATGCATTACTACTGGTGCCGAATTTGTCGAAGAATTATCAGAATTAGCTTAGGAAACCCTTTAGAAATTTCCATTACTTGCCCTTTTTGCTCCAGAAATCTCCGTCATGAATTGGACGTAGCTAGGGCTCGAAATTTCCCTCGTCTCCCCAATTTAGCTGCTGGAAATCGCACGATTTCCCCCCCGATTGTCCCTCTGTGGGGATTCGAAGCCGATGAGTCTTGGATCACGCTCCGATTCTCCAGACCAGAGGCCAATTCCGGGATTGAGGCGATTCCGAGGGTGAAAATTACGAGGTATCATTTGGAGAAGGATTCGAATTGTGCGATTTGTAAAGAGGAATTTGAAATGGGAGGGGAAGTAAGGGAGTTGCCTTGCAAGCATTTCTACCATTCGGATTGTGTTGTTCCTTGGTTGAGGATCCATAATACTTGCCCTGTTTGCCGGTATACGTTGGAGAATATCGTCGCTGCTGACGGCGAGGGGAGTGGGAGTGGTTTTAATGGCGGAATGGTTGAGGAATTAGGAGAAGAAGAAGGAGATGGAGAAGGAAGAGGGAATGGAGGGTGGTGGAACTTGGTGTGTTGTTGGTGGCCACTCCGTTTAATCGCCGATTGGGCTCGCCGCCTCCGGTTTGCTGATTCCGGTGATAGTTTCTTCATCGTTGAACCAGGCTCATGGATGTACTCTTGGCTTGCTAATTAA

Protein sequence

MSMSQNPRPRIVVNGGFPRTTTMHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVARARNFPRLPNLAAGNRTISPPIVPLWGFEADESWITLRFSRPEANSGIEAIPRVKITRYHLEKDSNCAICKEEFEMGGEVRELPCKHFYHSDCVVPWLRIHNTCPVCRYTLENIVAADGEGSGSGFNGGMVEELGEEEGDGEGRGNGGWWNLVCCWWPLRLIADWARRLRFADSGDSFFIVEPGSWMYSWLAN

Homology

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BLAST of Lsi05G001870 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.9e-22
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 1


Query: 91  FEADESWITLRFSRPEANSGIEAIPRVKITRYHLEK-DSNCAICKEEFEMGGEVRELPCK 150
           FE   +  T R   P   S I+A+P +KI + HL   DSNC +CK+EFE+G E +++PC 
Sbjct: 150 FEQLSAGTTRRGPPPAPRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCN 209

Query: 151 HFYHSDCVVPWLRIHNTCPVCRYTL 175
           H YHSDC+VPWL  HN+CPVCR  L
Sbjct: 210 HIYHSDCIVPWLVQHNSCPVCRQEL 234

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BLAST of Lsi05G001870 vs. Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.6e-21
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 92  EADESWITLRFSRPEANSGIEAIPRVKITRYHLEKDSNCAICKEEFEMGGEVRELPCKHF 151
           EA  + I    + P + S IE++PRV+I+  H + ++NCA+C E FE G E RE+PCKH 
Sbjct: 177 EASGNGIGRSGNPPASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHI 236

Query: 152 YHSDCVVPWLRIHNTCPVCRYTL 175
           +H DC+VPWL I N+CPVCR+ L
Sbjct: 237 FHGDCIVPWLSIRNSCPVCRFEL 259

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BLAST of Lsi05G001870 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.5e-21
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 1


Query: 92  EADESWITLRFSRPEANSGIEAIPRVKITRYHLEKDSNCAICKEEFEMGGEVRELPCKHF 151
           EA  + I    + P + S IE++PRV+I+  H+  ++NCA+C E FE   E RE+PCKH 
Sbjct: 161 EASATGIGRSGNPPASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHL 220

Query: 152 YHSDCVVPWLRIHNTCPVCRYTL 175
           +H DC+VPWL I N+CPVCR+ L
Sbjct: 221 FHDDCIVPWLSIRNSCPVCRFEL 243

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BLAST of Lsi05G001870 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.0e-19
Identity = 49/125 (39.20%), Postives = 74/125 (59.20%), Query Frame = 1


Query: 105 PEANSGIEAIPRVKITRYHLEKDSN-CAICKEEFEMGGEVRELPCKHFYHSDCVVPWLRI 164
           P + S I+A+P VK+T+  L+ + N CA+C +EFE G +V+++PCKH +H DC++PWL +
Sbjct: 190 PASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLEL 249

Query: 165 HNTCPVCRYTL-------ENIV-----AADGEGSGSG-----FNGGMVEELGEEEGDGEG 212
           HN+CPVCR+ L       EN       + DG+GS  G     F+  +      ++G G G
Sbjct: 250 HNSCPVCRFELPTDDPDYENRSQGSQGSGDGQGSVEGQQTPRFSIQLPWPFRRQDGSGSG 309

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BLAST of Lsi05G001870 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-18
Identity = 46/108 (42.59%), Postives = 65/108 (60.19%), Query Frame = 1


Query: 105 PEANSGIEAIPRVKITRYHLEKDSN-CAICKEEFEMGGEVRELPCKHFYHSDCVVPWLRI 164
           P + S IEA+P V IT+ +L  + N CA+C ++FE G E +++PCKH YH DC++PWL +
Sbjct: 198 PASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLEL 257

Query: 165 HNTCPVCRYTLENIVAADGEGSGSGFNGGMVEELGEEEGDGEGRGNGG 212
           HN+CPVCR+ L      D E    G  G      G  +GD  G+ + G
Sbjct: 258 HNSCPVCRHELPT-DDPDYERRVRGAQG----TSGGNDGDNSGQRSDG 300

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BLAST of Lsi05G001870 vs. TrEMBL
Match: A0A0A0LC10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G214060 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 8.7e-114
Identity = 199/248 (80.24%), Postives = 206/248 (83.06%), Query Frame = 1


Query: 5   QNPRPRIVVNGGFPRTTTMHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR 64
           QNPR R+VVNGGF RTT MHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR
Sbjct: 7   QNPRSRVVVNGGFTRTTNMHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR 66

Query: 65  ARNFPRLPNLAAGNRTISPPIVPLWGFE-ADESWITLRFSRPEANSGIEAIPRVKITRYH 124
           ARNFPRLP        ISPPIV  WGFE  D SWITL+F RP  NSGIE IPRV+IT  H
Sbjct: 67  ARNFPRLP-------AISPPIVQRWGFEETDASWITLQFPRPAVNSGIEEIPRVRITGKH 126

Query: 125 LEKDSNCAICKEEFEMGGEVRELPCKHFYHSDCVVPWLRIHNTCPVCRYTLENIVAADGE 184
           LEKDSNCAICKEEFEMG EVRELPCKHFYHSDCV+PWLR+HNTCPVCRYTLENI     E
Sbjct: 127 LEKDSNCAICKEEFEMGEEVRELPCKHFYHSDCVIPWLRMHNTCPVCRYTLENI---GDE 186

Query: 185 GSGSGFNGGMVEEL-GEEEGDGEGRGNGGWWNLVCCWWPLRLIADWARRLRFADSGDSFF 244
           GSGSGFNGG  EE   EEE +GE RGN GWWNLVCCWWP RL+ DWARRLRFADSGDSFF
Sbjct: 187 GSGSGFNGGRGEEFREEEEEEGERRGN-GWWNLVCCWWPFRLVGDWARRLRFADSGDSFF 243

Query: 245 IVEPGSWM 251
            VE   WM
Sbjct: 247 AVERKRWM 243

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BLAST of Lsi05G001870 vs. TrEMBL
Match: V7BR96_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G213500g PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 4.0e-42
Identity = 107/288 (37.15%), Postives = 142/288 (49.31%), Query Frame = 1


Query: 2   SMSQNPRPRIVVNGGFPRTTTMHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELD 61
           SMS   R R+VVNG   RT T HY+WC  C+R +R+   N  + SI CP+C  +LR+ELD
Sbjct: 59  SMSLTGRSRVVVNG-VRRTRTFHYFWCLYCQRTVRLPFTNS-DGSI-CPYCFHHLRYELD 118

Query: 62  VARARNFPRLPN----------LAAGNRTISPPI----------VPLWGFEADE-----S 121
           ++R R    +PN          L +    + PP+             W  E +      +
Sbjct: 119 ISRPRLLMNVPNNLQPSPATQLLDSLALVLDPPLRRQNNNHFNTTTQWETENEHGSDHHA 178

Query: 122 WITLRFSRPE----------------------------ANSGIEAIPRVKITRYHLEKDS 181
           WITLRF RP                             A+S I A+P VK+T+ HL  D 
Sbjct: 179 WITLRFPRPTRADRPIFSDDDFINGVIENSNRTRPPPAASSAISALPVVKLTQAHLASDP 238

Query: 182 NCAICKEEFEMGGEVRELPCKHFYHSDCVVPWLRIHNTCPVCRYTLENIVAADGEGSGSG 231
           NC +CK+EFE+  E RELPCKHFYHSDC++PWLR+HNTCPVCRY L+ +V  D   S   
Sbjct: 239 NCPVCKDEFEVEMEARELPCKHFYHSDCIIPWLRMHNTCPVCRYELQGVVTPDANYS--- 298

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BLAST of Lsi05G001870 vs. TrEMBL
Match: A0A078EQS6_BRANA (BnaC06g29330D protein OS=Brassica napus GN=BnaC06g29330D PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.0e-33
Identity = 97/244 (39.75%), Postives = 127/244 (52.05%), Query Frame = 1


Query: 3   MSQNP-RPRIVVNGGFPRTTTMHYYWCRICRRIIRISLGNPLEISITCPFCSR--NLRHE 62
           M+ NP RPR++VNG   RT T HY++CR C R IR  L N       CPFCSR  NL  E
Sbjct: 1   MASNPYRPRVIVNGT-RRTRTFHYFYCRHCSRTIR--LRNYGLYGSLCPFCSREINLHDE 60

Query: 63  LDVARA-RNF---------PRLPNLAAGNRTISPPIVPLWGFEADESWITLRFSRPEAN- 122
           LD+ R  R+F           L N +  NR  +  +V     +  ++  + R   P A+ 
Sbjct: 61  LDIMRLNRSFWDTDTDWITLHLINSSRSNR-FNHELVNDTDDDFVDAMPSERVGPPPASL 120

Query: 123 SGIEAIPRVKITRYHLEKDSNCAICKEEFEMGGEVRELPCKHFYHSDCVVPWLRIHNTCP 182
           S IE +  V IT   L K+  CAICKEEFE+G E +EL C H YH+ C+V WL IHNTCP
Sbjct: 121 SAIEDLKTVTITEEDLAKEKVCAICKEEFEVGEEGKELKCLHLYHTSCIVSWLNIHNTCP 180

Query: 183 VCRYTLENIVAADGEGSGSGFNGGMVEELGEEEGDGEGRGNGGWWNLVCCWWPLRLIADW 233
           +CR+ +   V      SGS  +GG    +  +  +  G         VC  WPLR++ DW
Sbjct: 181 ICRFEVRLGV------SGSDIDGGGSRHVDHDRSNRSG-------TRVCSLWPLRMMFDW 227

[Close]

BLAST of Lsi05G001870 vs. TrEMBL
Match: A0A022QH37_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025958mg PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.6e-33
Identity = 99/276 (35.87%), Postives = 132/276 (47.83%), Query Frame = 1


Query: 9   PRIVVNGGFPRTTTMHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVARARNF 68
           P I VNG   RT T HYYWCR C+R IR +  NP EI   CP C   + HELD++R R  
Sbjct: 7   PGITVNG-VRRTRTYHYYWCRRCQRSIRTTTTNPSEI--LCPVCFGQINHELDISRPRPL 66

Query: 69  --PRLPNLAAGN------RTISPPIVPLWGFEADESWITLRF----------SRPEANSG 128
             P   + +         R + PPI          + + L+F          SRP ++ G
Sbjct: 67  LEPGFESSSGARLLDSLARMLDPPIPNA----THRASVLLQFIGPDGRTGPVSRPSSDQG 126

Query: 129 -----------------------IEAIPRVKITRYHLEK-DSNCAICKEEFEMGGEVREL 188
                                  IEA+P V++   +L+  D+ C +CK+EFE+G  VREL
Sbjct: 127 LDELIQELTQNDRPGPPTASPSAIEALPVVELRGEYLKNNDTCCPVCKDEFEVGVLVREL 186

Query: 189 PCKHFYHSDCVVPWLRIHNTCPVCRYTLENIVAADGE------------GSGSGFNGGMV 231
           PCKHFYHSDC+VPWL I+NTCPVCRY +  +   +              G    F G M 
Sbjct: 187 PCKHFYHSDCIVPWLHINNTCPVCRYEIRGLNNNNNNNNNNDASNNNFFGDDYNFEGFMF 246

[Close]

BLAST of Lsi05G001870 vs. TrEMBL
Match: A0A0D3CYW0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.8e-33
Identity = 94/248 (37.90%), Postives = 125/248 (50.40%), Query Frame = 1


Query: 3   MSQNP-RPRIVVNGGFPRTTTMHYYWCRICRRIIRISLGNPLEISITCPFCSR--NLRHE 62
           M+ NP RPR++VNG   RT T HY++CR C R IR  L N       CPFCSR  NL  E
Sbjct: 1   MASNPYRPRVIVNGT-RRTRTFHYFYCRHCSRTIR--LRNYGLYGSLCPFCSREINLHDE 60

Query: 63  LDVARA-RNF---------PRLPNLAAGNRTISPPIVPLWGFEADESWITLRFSR----- 122
           LD+ R  R+F           L N +  +  ++         + D+ ++    S      
Sbjct: 61  LDIMRLNRSFWDTDTDWITLHLINSSRNHELVN---------DTDDDFVDAMPSERVGPP 120

Query: 123 PEANSGIEAIPRVKITRYHLEKDSNCAICKEEFEMGGEVRELPCKHFYHSDCVVPWLRIH 182
           P + S IE +  V IT   L K+  CAICKEEFE+G E +EL C H YH+ C+V WL IH
Sbjct: 121 PASLSAIEDLKTVTITEEDLAKEKVCAICKEEFEVGEEGKELKCLHLYHTSCIVSWLNIH 180

Query: 183 NTCPVCRYTLENIVAADGEGSGSGFNGGMVEELGEEEGDGEGRGNGGWWNLVCCWWPLRL 233
           NTCP+CR+ +   V      SGS  +GG    +  +  +  G         VC  WPLR+
Sbjct: 181 NTCPICRFEVRLRV------SGSDIDGGGSRHVDHDRSNRSG-------TRVCSLWPLRM 223

[Close]

BLAST of Lsi05G001870 vs. TAIR10
Match: AT1G68180.1 (AT1G68180.1 RING/U-box superfamily protein)

HSP 1 Score: 149.1 bits (375), Expect = 3.8e-36
Identity = 96/267 (35.96%), Postives = 122/267 (45.69%), Query Frame = 1


Query: 3   MSQNPRPRIVVNGGFPRTTTMHYYWCRICRRIIRI---SLGNPLEISITCPFCSR--NLR 62
           M+   RPR++VNG   RT T HY++CR C R IR+    L  P+     CPFCSR  NL 
Sbjct: 1   MTSAYRPRVIVNGT-RRTRTFHYFYCRHCSRTIRLRSFGLYGPI-----CPFCSREINLH 60

Query: 63  HELDVARARNFPRLPNLAAGNRTISPPIVPLWGFEADESWITL---------RFSR---- 122
            ELD+ R                   P  P W  ++D  WITL         RF+     
Sbjct: 61  DELDIMR-------------------PSRPYW--DSDTDWITLHLINEPRSNRFNHDDLV 120

Query: 123 -------------------PEANSGIEAIPRVKITRYHLEKDSNCAICKEEFEMGGEVRE 182
                              P + S IEA+  V IT   L K+  CAICKEEFE+G E +E
Sbjct: 121 YNTDEEFADVMPSVQIGPPPASQSAIEAVRTVIITDEDLVKEKVCAICKEEFEVGEEGKE 180

Query: 183 LPCKHFYHSDCVVPWLRIHNTCPVCRYTLENIVAADGEGSGSGFNGGMVEELGEEEGDGE 233
           L C H YHS C+V WL IHNTCP+CR+ +   V+      G  +N          + D  
Sbjct: 181 LKCLHLYHSSCIVSWLNIHNTCPICRFEVNLGVSESNVDEGGSYN---------IDNDRS 227

[Close]

BLAST of Lsi05G001870 vs. TAIR10
Match: AT2G40830.2 (AT2G40830.2 RING-H2 finger C1A)

HSP 1 Score: 106.7 bits (265), Expect = 2.2e-23
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 1


Query: 91  FEADESWITLRFSRPEANSGIEAIPRVKITRYHLEK-DSNCAICKEEFEMGGEVRELPCK 150
           FE   +  T R   P   S I+A+P +KI + HL   DSNC +CK+EFE+G E +++PC 
Sbjct: 150 FEQLSAGTTRRGPPPAPRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCN 209

Query: 151 HFYHSDCVVPWLRIHNTCPVCRYTL 175
           H YHSDC+VPWL  HN+CPVCR  L
Sbjct: 210 HIYHSDCIVPWLVQHNSCPVCRQEL 234

[Close]

BLAST of Lsi05G001870 vs. TAIR10
Match: AT3G46620.1 (AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-22
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 92  EADESWITLRFSRPEANSGIEAIPRVKITRYHLEKDSNCAICKEEFEMGGEVRELPCKHF 151
           EA  + I    + P + S IE++PRV+I+  H + ++NCA+C E FE G E RE+PCKH 
Sbjct: 177 EASGNGIGRSGNPPASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHI 236

Query: 152 YHSDCVVPWLRIHNTCPVCRYTL 175
           +H DC+VPWL I N+CPVCR+ L
Sbjct: 237 FHGDCIVPWLSIRNSCPVCRFEL 259

[Close]

BLAST of Lsi05G001870 vs. TAIR10
Match: AT5G59550.1 (AT5G59550.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 102.1 bits (253), Expect = 5.4e-22
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 1


Query: 92  EADESWITLRFSRPEANSGIEAIPRVKITRYHLEKDSNCAICKEEFEMGGEVRELPCKHF 151
           EA  + I    + P + S IE++PRV+I+  H+  ++NCA+C E FE   E RE+PCKH 
Sbjct: 161 EASATGIGRSGNPPASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHL 220

Query: 152 YHSDCVVPWLRIHNTCPVCRYTL 175
           +H DC+VPWL I N+CPVCR+ L
Sbjct: 221 FHDDCIVPWLSIRNSCPVCRFEL 243

[Close]

BLAST of Lsi05G001870 vs. TAIR10
Match: AT1G60360.1 (AT1G60360.1 RING/U-box superfamily protein)

HSP 1 Score: 98.6 bits (244), Expect = 5.9e-21
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 1


Query: 105 PEANSGIEAIPRVKITRYHLEKD-SNCAICKEEFEMGGEVRELPCKHFYHSDCVVPWLRI 164
           P +   I ++P VKIT  HL  D S C +C EEF +GG+  ELPCKH YH DC+VPWLR+
Sbjct: 198 PASEPTINSLPSVKITPQHLTNDMSQCTVCMEEFIVGGDATELPCKHIYHKDCIVPWLRL 257

Query: 165 HNTCPVCR--YTLENIVAADGEGS 186
           +N+CP+CR    L N VA   E S
Sbjct: 258 NNSCPICRRDLPLVNTVAESRERS 281

[Close]

BLAST of Lsi05G001870 vs. NCBI nr
Match: gi|659112139|ref|XP_008456082.1| (PREDICTED: uncharacterized protein LOC103496124 isoform X1 [Cucumis melo])

HSP 1 Score: 456.1 bits (1172), Expect = 4.1e-125
Identity = 217/258 (84.11%), Postives = 222/258 (86.05%), Query Frame = 1


Query: 5   QNPRPRIVVNGGFPRTTTMHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR 64
           QNPR RIVVNGGF RTT MHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR
Sbjct: 7   QNPRSRIVVNGGFTRTTNMHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR 66

Query: 65  ARNFPRLPNLAAGNRTISPPIVPLWGFE-ADESWITLRFSRPEANSGIEAIPRVKITRYH 124
           ARNFPRLP        ISPPIV  WGFE  DESWITL+F RP  NSGIE IPRV+IT  H
Sbjct: 67  ARNFPRLP-------PISPPIVQRWGFEDTDESWITLQFPRPAVNSGIEEIPRVRITGKH 126

Query: 125 LEKDSNCAICKEEFEMGGEVRELPCKHFYHSDCVVPWLRIHNTCPVCRYTLENIVAADGE 184
           LEKDSNCAICKEEFEMG EVRELPCKHFYHSDCVVPWLR+HNTCPVCRYTLENI     E
Sbjct: 127 LEKDSNCAICKEEFEMGEEVRELPCKHFYHSDCVVPWLRMHNTCPVCRYTLENI---GDE 186

Query: 185 GSGSGFNGGMVEELG-----EEEGDGEGRGNGGWWNLVCCWWPLRLIADWARRLRFADSG 244
           GSGSGFNGG  EELG     EEEG+GEGRGN GWWNLVCCWWPLRLI DWARRLRFADSG
Sbjct: 187 GSGSGFNGGRGEELGEEEEEEEEGEGEGRGN-GWWNLVCCWWPLRLIGDWARRLRFADSG 246

Query: 245 DSFFIVEPGSWMYSWLAN 257
           DSFF+VEPGSWMYSWLAN
Sbjct: 247 DSFFVVEPGSWMYSWLAN 253

[Close]

BLAST of Lsi05G001870 vs. NCBI nr
Match: gi|659112141|ref|XP_008456083.1| (PREDICTED: uncharacterized protein LOC103496124 isoform X2 [Cucumis melo])

HSP 1 Score: 445.3 bits (1144), Expect = 7.3e-122
Identity = 215/258 (83.33%), Postives = 220/258 (85.27%), Query Frame = 1


Query: 5   QNPRPRIVVNGGFPRTTTMHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR 64
           QNPR RIVVNGGF RTT MHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR
Sbjct: 7   QNPRSRIVVNGGFTRTTNMHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR 66

Query: 65  ARNFPRLPNLAAGNRTISPPIVPLWGFE-ADESWITLRFSRPEANSGIEAIPRVKITRYH 124
           ARNFPRLP        ISPPIV  WGFE  DESWITL+F RP  NSGIE IPRV+IT  H
Sbjct: 67  ARNFPRLP-------PISPPIVQRWGFEDTDESWITLQFPRPAVNSGIEEIPRVRITGKH 126

Query: 125 LEKDSNCAICKEEFEMGGEVRELPCKHFYHSDCVVPWLRIHNTCPVCRYTLENIVAADGE 184
           LEKDSNCAICKEEFEMG EVRELPCKHFYHSDCVVPWLR+HNTCPVCRYTLENI     E
Sbjct: 127 LEKDSNCAICKEEFEMGEEVRELPCKHFYHSDCVVPWLRMHNTCPVCRYTLENI---GDE 186

Query: 185 GSGSGFNGGMVEELG-----EEEGDGEGRGNGGWWNLVCCWWPLRLIADWARRLRFADSG 244
           GSGSGFNGG  EELG     EEEG+GEGRGN GWWNLVCCWWPLRLI DWARRLRFADSG
Sbjct: 187 GSGSGFNGGRGEELGEEEEEEEEGEGEGRGN-GWWNLVCCWWPLRLIGDWARRLRFADSG 246

Query: 245 DSFFIVEPGSWMYSWLAN 257
           DSFF+VE  SWMYSWLAN
Sbjct: 247 DSFFVVE-RSWMYSWLAN 252

[Close]

BLAST of Lsi05G001870 vs. NCBI nr
Match: gi|449464484|ref|XP_004149959.1| (PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X1 [Cucumis sativus])

HSP 1 Score: 440.7 bits (1132), Expect = 1.8e-120
Identity = 208/254 (81.89%), Postives = 215/254 (84.65%), Query Frame = 1


Query: 5   QNPRPRIVVNGGFPRTTTMHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR 64
           QNPR R+VVNGGF RTT MHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR
Sbjct: 7   QNPRSRVVVNGGFTRTTNMHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR 66

Query: 65  ARNFPRLPNLAAGNRTISPPIVPLWGFE-ADESWITLRFSRPEANSGIEAIPRVKITRYH 124
           ARNFPRLP        ISPPIV  WGFE  D SWITL+F RP  NSGIE IPRV+IT  H
Sbjct: 67  ARNFPRLP-------AISPPIVQRWGFEETDASWITLQFPRPAVNSGIEEIPRVRITGKH 126

Query: 125 LEKDSNCAICKEEFEMGGEVRELPCKHFYHSDCVVPWLRIHNTCPVCRYTLENIVAADGE 184
           LEKDSNCAICKEEFEMG EVRELPCKHFYHSDCV+PWLR+HNTCPVCRYTLENI     E
Sbjct: 127 LEKDSNCAICKEEFEMGEEVRELPCKHFYHSDCVIPWLRMHNTCPVCRYTLENI---GDE 186

Query: 185 GSGSGFNGGMVEEL-GEEEGDGEGRGNGGWWNLVCCWWPLRLIADWARRLRFADSGDSFF 244
           GSGSGFNGG  EE   EEE +GE RGN GWWNLVCCWWP RL+ DWARRLRFADSGDSFF
Sbjct: 187 GSGSGFNGGRGEEFREEEEEEGERRGN-GWWNLVCCWWPFRLVGDWARRLRFADSGDSFF 246

Query: 245 IVEPGSWMYSWLAN 257
            VEPGSWMYSWLAN
Sbjct: 247 AVEPGSWMYSWLAN 249

[Close]

BLAST of Lsi05G001870 vs. NCBI nr
Match: gi|778680175|ref|XP_011651263.1| (PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X2 [Cucumis sativus])

HSP 1 Score: 429.9 bits (1104), Expect = 3.2e-117
Identity = 206/254 (81.10%), Postives = 213/254 (83.86%), Query Frame = 1


Query: 5   QNPRPRIVVNGGFPRTTTMHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR 64
           QNPR R+VVNGGF RTT MHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR
Sbjct: 7   QNPRSRVVVNGGFTRTTNMHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR 66

Query: 65  ARNFPRLPNLAAGNRTISPPIVPLWGFE-ADESWITLRFSRPEANSGIEAIPRVKITRYH 124
           ARNFPRLP        ISPPIV  WGFE  D SWITL+F RP  NSGIE IPRV+IT  H
Sbjct: 67  ARNFPRLP-------AISPPIVQRWGFEETDASWITLQFPRPAVNSGIEEIPRVRITGKH 126

Query: 125 LEKDSNCAICKEEFEMGGEVRELPCKHFYHSDCVVPWLRIHNTCPVCRYTLENIVAADGE 184
           LEKDSNCAICKEEFEMG EVRELPCKHFYHSDCV+PWLR+HNTCPVCRYTLENI     E
Sbjct: 127 LEKDSNCAICKEEFEMGEEVRELPCKHFYHSDCVIPWLRMHNTCPVCRYTLENI---GDE 186

Query: 185 GSGSGFNGGMVEEL-GEEEGDGEGRGNGGWWNLVCCWWPLRLIADWARRLRFADSGDSFF 244
           GSGSGFNGG  EE   EEE +GE RGN GWWNLVCCWWP RL+ DWARRLRFADSGDSFF
Sbjct: 187 GSGSGFNGGRGEEFREEEEEEGERRGN-GWWNLVCCWWPFRLVGDWARRLRFADSGDSFF 246

Query: 245 IVEPGSWMYSWLAN 257
            VE  SWMYSWLAN
Sbjct: 247 AVE-RSWMYSWLAN 248

[Close]

BLAST of Lsi05G001870 vs. NCBI nr
Match: gi|778680186|ref|XP_011651266.1| (PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X3 [Cucumis sativus])

HSP 1 Score: 419.1 bits (1076), Expect = 5.6e-114
Identity = 199/245 (81.22%), Postives = 206/245 (84.08%), Query Frame = 1


Query: 5   QNPRPRIVVNGGFPRTTTMHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR 64
           QNPR R+VVNGGF RTT MHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR
Sbjct: 7   QNPRSRVVVNGGFTRTTNMHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVAR 66

Query: 65  ARNFPRLPNLAAGNRTISPPIVPLWGFE-ADESWITLRFSRPEANSGIEAIPRVKITRYH 124
           ARNFPRLP        ISPPIV  WGFE  D SWITL+F RP  NSGIE IPRV+IT  H
Sbjct: 67  ARNFPRLP-------AISPPIVQRWGFEETDASWITLQFPRPAVNSGIEEIPRVRITGKH 126

Query: 125 LEKDSNCAICKEEFEMGGEVRELPCKHFYHSDCVVPWLRIHNTCPVCRYTLENIVAADGE 184
           LEKDSNCAICKEEFEMG EVRELPCKHFYHSDCV+PWLR+HNTCPVCRYTLENI     E
Sbjct: 127 LEKDSNCAICKEEFEMGEEVRELPCKHFYHSDCVIPWLRMHNTCPVCRYTLENI---GDE 186

Query: 185 GSGSGFNGGMVEEL-GEEEGDGEGRGNGGWWNLVCCWWPLRLIADWARRLRFADSGDSFF 244
           GSGSGFNGG  EE   EEE +GE RGN GWWNLVCCWWP RL+ DWARRLRFADSGDSFF
Sbjct: 187 GSGSGFNGGRGEEFREEEEEEGERRGN-GWWNLVCCWWPFRLVGDWARRLRFADSGDSFF 240

Query: 245 IVEPG 248
            VEPG
Sbjct: 247 AVEPG 240

The following BLAST results are available for this feature:

BLAST of Lsi05G001870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RHC1A_ARATH	3.9e-22	51.76	Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2...	[more]
RDUF1_ARATH	5.6e-21	50.60	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1	[more]
RDUF2_ARATH	9.5e-21	49.40	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1	[more]
RNG1L_ARATH	4.0e-19	39.20	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1...	[more]
RING1_GOSHI	2.0e-18	42.59	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1	[more]

BLAST of Lsi05G001870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC10_CUCSA	8.7e-114	80.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G214060 PE=4 SV=1	[more]
V7BR96_PHAVU	4.0e-42	37.15	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G213500g PE=4 SV=1	[more]
A0A078EQS6_BRANA	2.0e-33	39.75	BnaC06g29330D protein OS=Brassica napus GN=BnaC06g29330D PE=4 SV=1	[more]
A0A022QH37_ERYGU	2.6e-33	35.87	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025958mg PE=4 SV=1	[more]
A0A0D3CYW0_BRAOL	5.8e-33	37.90	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of Lsi05G001870 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68180.1	3.8e-36	35.96	RING/U-box superfamily protein	[more]
AT2G40830.2	2.2e-23	51.76	RING-H2 finger C1A	[more]
AT3G46620.1	3.1e-22	50.60	zinc finger (C3HC4-type RING finger) family protein	[more]
AT5G59550.1	5.4e-22	49.40	zinc finger (C3HC4-type RING finger) family protein	[more]
AT1G60360.1	5.9e-21	52.38	RING/U-box superfamily protein	[more]

BLAST of Lsi05G001870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112139\|ref\|XP_008456082.1\|	4.1e-125	84.11	PREDICTED: uncharacterized protein LOC103496124 isoform X1 [Cucumis melo]	[more]
gi\|659112141\|ref\|XP_008456083.1\|	7.3e-122	83.33	PREDICTED: uncharacterized protein LOC103496124 isoform X2 [Cucumis melo]	[more]
gi\|449464484\|ref\|XP_004149959.1\|	1.8e-120	81.89	PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X1 [Cucumis sativus]	[more]
gi\|778680175\|ref\|XP_011651263.1\|	3.2e-117	81.10	PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X2 [Cucumis sativus]	[more]
gi\|778680186\|ref\|XP_011651266.1\|	5.6e-114	81.22	PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X3 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001870.1	Lsi05G001870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 129..171 score: 3.0
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 130..170 score: 3.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 130..171 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 125..174 score: 1.0
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 24..212 score: 4.5
None	No IPR available	PANTHER	PTHR22763:SF88	RING/U-BOX DOMAIN-CONTAINING PROTEIN	coord: 24..212 score: 4.5
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 111..176 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G001870	Csa3G214060	Cucumber (Chinese Long) v2	culsiB202
Lsi05G001870	CSPI03G18810	Wild cucumber (PI 183967)	cpilsiB202
Lsi05G001870	Cucsa.049550	Cucumber (Gy14) v1	cgylsiB029
Lsi05G001870	CmaCh04G005160	Cucurbita maxima (Rimu)	cmalsiB690
Lsi05G001870	CmoCh04G005550	Cucurbita moschata (Rifu)	cmolsiB683
Lsi05G001870	Cla013043	Watermelon (97103) v1	lsiwmB361
Lsi05G001870	MELO3C019481	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G001870	ClCG05G009740	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G001870	MELO3C019481.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G001870	Cla97C05G092100	Watermelon (97103) v2	lsiwmbB329
Lsi05G001870	Bhi01G001227	Wax gourd	lsiwgoB431
Lsi05G001870	Cp4.1LG01g02150	Cucurbita pepo (Zucchini)	cpelsiB369
Lsi05G001870	CsGy3G018660	Cucumber (Gy14) v2	cgyblsiB189
Lsi05G001870	Carg26428	Silver-seed gourd	carlsiB057
Lsi05G001870	CsaV3_3G018890	Cucumber (Chinese Long) v3	cuclsiB224

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G001870	Cucumber (Gy14) v1	cgylsiB003
Lsi05G001870	Cucurbita maxima (Rimu)	cmalsiB316
Lsi05G001870	Cucurbita moschata (Rifu)	cmolsiB304
Lsi05G001870	Cucurbita pepo (Zucchini)	cpelsiB177
Lsi05G001870	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G001870	Cucumber (Chinese Long) v2	culsiB211
Lsi05G001870	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G001870	Silver-seed gourd	carlsiB595
Lsi05G001870	Cucumber (Chinese Long) v3	cuclsiB230