Cp4.1LG01g02150 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g02150
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRING/U-box superfamily protein
LocationCp4.1LG01 : 2678993 .. 2680342 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACGATTCGGAGGGTGAAAATTACGGAGTCGCATTTGCAGAAGGATTCGAGCTGTGCGATTTGTAAAGAGGAATTCGAAATCGGAGGGGCAGTGAGGGAGTTGCCGTGTAGACATTTTTACCATTCGGATTGCATTGTTCCTTGGTTGAGAATCCATAATACTTGCCCTATTTGCCGGTACACACTACAGAACGCCATTGATGGTGAGAGCTCTGAGGAATCTGTGGAAGAAGGAGACGGAAGAGGGAATGGGTGGTGGAATGTGGTGCGTTCATGGTGGCCGTTCCGTGTGATCGGCGATTTGGCTCGCCGGCTAGGGTTCGCCGATTATGGCGATAATCTCCTCGCCTTGGAAAGTAAGATTTTTAAATTTTATTCTTTATTGCAATTATGATCTTATAACTAACGTAAAGATCAGACAAAAAAAAATTAAAATTACAAATTTACACCAATAAATATAAAATTAAAAAAAAATTAGCCAAATATTGCAGCAGATTCATGGATGTACTCTTGGCTGGCTGATTGACACACCCACCCCATGTATGTATCTATCACTCTCTTTTTTTTCATTAGGTTGCTTTATTTATTTATTTATATTTACTCAAATATATATGTGAGGTCCCACGTCGTTTGTGAAGTGAATGAGAACGAAACATTTATTATAAGAGTGTGAAAATCTCTCCTTCTGGAGGTGTTTTAAAAATTATGAGAAGAAGTCTAGAAACGTAAACCCAAAGAAGACAATATTTGCTAGTGGTGACCTTGGACGGTTACAAATGGTATCAATTATGAGAAGTCTAGAAACGTAAACCCAAAAACGACAATATTTGCTAGTGGTGACCTTGGATGGTTACAAATGGTATCAAAGCCAGAATGGTGTGCCAGCAAGGACGCTGGCCCCTAAGAGGTGGATTCTAAGGTTCCCATATCGGTTGGGCCCTTAAAGGGGTGGATTCTGAGATCCCCATGTTGGAGAGGGGCACAAAATGAATGTATGCCAAAGGAGTGGATTATGAGGTCCCCATATCAGTTGGAGAGAGGGGAACGAAATGAATGTGTGCCGGCGAGGACACTGGGCCCCTAAAGAAGTGGATTATGAGGTCTTATATCGATCGGAGAGTAATGAGAAGCATTCTTTATAAGAGTATAAAAACTTTTTCTTAGTTGACACATTTTAAAACCACGAAAACATGAACTAACATATTTTGCTTATTAAATTTGTTGTAACATTGTGTGTATAGAAATTGCAGAGAGTCAAAAGGAACCTTATTTTCAGAACTCTACAGCTTACTATTCGGTTCCTCTTGAGATCTGCAAAATCCCATCTCATAATTATATGTTTTAG

mRNA sequence

ATGGAGACGATTCGGAGGGTGAAAATTACGGAGTCGCATTTGCAGAAGGATTCGAGCTGTGCGATTTGTAAAGAGGAATTCGAAATCGGAGGGGCAGTGAGGGAGTTGCCGTGTAGACATTTTTACCATTCGGATTGCATTGTTCCTTGGTTGAGAATCCATAATACTTGCCCTATTTGCCGGTACACACTACAGAACGCCATTGATGGTGAGAGCTCTGAGGAATCTGTGGAAGAAGGAGACGGAAGAGGGAATGGGTGGTGGAATGTGGTGCGTTCATGGTGGCCGTTCCGTGTGATCGGCGATTTGGCTCGCCGGCTAGGGTTCGCCGATTATGGCGATAATCTCCTCGCCTTGGAAAAAATTGCAGAGAGTCAAAAGGAACCTTATTTTCAGAACTCTACAGCTTACTATTCGGTTCCTCTTGAGATCTGCAAAATCCCATCTCATAATTATATGTTTTAG

Coding sequence (CDS)

ATGGAGACGATTCGGAGGGTGAAAATTACGGAGTCGCATTTGCAGAAGGATTCGAGCTGTGCGATTTGTAAAGAGGAATTCGAAATCGGAGGGGCAGTGAGGGAGTTGCCGTGTAGACATTTTTACCATTCGGATTGCATTGTTCCTTGGTTGAGAATCCATAATACTTGCCCTATTTGCCGGTACACACTACAGAACGCCATTGATGGTGAGAGCTCTGAGGAATCTGTGGAAGAAGGAGACGGAAGAGGGAATGGGTGGTGGAATGTGGTGCGTTCATGGTGGCCGTTCCGTGTGATCGGCGATTTGGCTCGCCGGCTAGGGTTCGCCGATTATGGCGATAATCTCCTCGCCTTGGAAAAAATTGCAGAGAGTCAAAAGGAACCTTATTTTCAGAACTCTACAGCTTACTATTCGGTTCCTCTTGAGATCTGCAAAATCCCATCTCATAATTATATGTTTTAG

Protein sequence

METIRRVKITESHLQKDSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPICRYTLQNAIDGESSEESVEEGDGRGNGWWNVVRSWWPFRVIGDLARRLGFADYGDNLLALEKIAESQKEPYFQNSTAYYSVPLEICKIPSHNYMF
Homology
[Close]
BLAST of Cp4.1LG01g02150 vs. Swiss-Prot
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.3e-20
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 1 

Query: 1   METIRRVKITESHLQK-DSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPI 60
           ++ +  +KI + HL+  DS+C +CK+EFE+G   +++PC H YHSDCIVPWL  HN+CP+
Sbjct: 170 IDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPV 229

Query: 61  CRYTLQNAIDGESSE--------------ESVEEGDGRGNGWWNVVRSWWPFRVIG 102
           CR  L +A    SS+               S       GN   N   S+WPFR  G
Sbjct: 230 CRQELPSASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSG 285

[Close]
BLAST of Cp4.1LG01g02150 vs. Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-17
Identity = 35/75 (46.67%), Postives = 54/75 (72.00%), Query Frame = 1 

Query: 1   METIRRVKITESHLQKDSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPIC 60
           +E++ RV+I++ H + +++CA+C E FE G   RE+PC+H +H DCIVPWL I N+CP+C
Sbjct: 196 IESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVC 255

Query: 61  RYTLQNAIDGESSEE 76
           R+ L +     S+EE
Sbjct: 256 RFELPSDPIQRSNEE 270

[Close]
BLAST of Cp4.1LG01g02150 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.6e-17
Identity = 38/108 (35.19%), Postives = 64/108 (59.26%), Query Frame = 1 

Query: 1   METIRRVKITESHLQKD-SSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPI 60
           ++ +  VK+T+  L+ + + CA+C +EFE G  V+++PC+H +H DC++PWL +HN+CP+
Sbjct: 196 IDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPV 255

Query: 61  CRYTLQNAIDGESSEESVEEGDGRGNGWWNV---------VRSWWPFR 99
           CR+ L    D    E   +   G G+G  +V         ++  WPFR
Sbjct: 256 CRFELPT--DDPDYENRSQGSQGSGDGQGSVEGQQTPRFSIQLPWPFR 301

[Close]
BLAST of Cp4.1LG01g02150 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-16
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 1 

Query: 1   METIRRVKITESHLQKDSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPIC 60
           +E++ RV+I++ H+  +++CA+C E FE     RE+PC+H +H DCIVPWL I N+CP+C
Sbjct: 180 IESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVC 239

Query: 61  RYTLQNAIDGESSEESVEEGDGRGNGWWNV 91
           R+ L +  +  S+    EE +  G   W +
Sbjct: 240 RFELPSEPNRRSNNN--EEDNAVGMTIWRL 267

[Close]
BLAST of Cp4.1LG01g02150 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-16
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1 

Query: 1   METIRRVKITESHLQKD-SSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPI 60
           +E +  V IT+S+L  + + CA+C ++FE G   +++PC+H YH DC++PWL +HN+CP+
Sbjct: 204 IEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPV 263

Query: 61  CRYTL--------------QNAIDGESSEESVEEGDGRGNGWWNVVRSW-----WPFRVI 102
           CR+ L              Q    G   + S +  DG       V RS+     WPF+  
Sbjct: 264 CRHELPTDDPDYERRVRGAQGTSGGNDGDNSGQRSDGDNR---TVERSFRISLPWPFQAR 321

[Close]
BLAST of Cp4.1LG01g02150 vs. TrEMBL
Match: A0A0A0LC10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G214060 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 8.8e-45
Identity = 82/133 (61.65%), Postives = 100/133 (75.19%), Query Frame = 1 

Query: 1   METIRRVKITESHLQKDSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPIC 60
           +E I RV+IT  HL+KDS+CAICKEEFE+G  VRELPC+HFYHSDC++PWLR+HNTCP+C
Sbjct: 107 IEEIPRVRITGKHLEKDSNCAICKEEFEMGEEVRELPCKHFYHSDCVIPWLRMHNTCPVC 166

Query: 61  RYTLQNAID------------GESSEESVEEGDGRGNGWWNVVRSWWPFRVIGDLARRLG 120
           RYTL+N  D             E  EE  EEG+ RGNGWWN+V  WWPFR++GD ARRL 
Sbjct: 167 RYTLENIGDEGSGSGFNGGRGEEFREEEEEEGERRGNGWWNLVCCWWPFRLVGDWARRLR 226

Query: 121 FADYGDNLLALEK 122
           FAD GD+  A+E+
Sbjct: 227 FADSGDSFFAVER 239

[Close]
BLAST of Cp4.1LG01g02150 vs. TrEMBL
Match: W9SBH9_9ROSA (Rhomboid-like protein OS=Morus notabilis GN=L484_024195 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-25
Identity = 57/109 (52.29%), Postives = 69/109 (63.30%), Query Frame = 1 

Query: 1   METIRRVKITESHLQKDSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPIC 60
           +E +  VK+TES L+ +  CA+CKEEFE GG VRELPCRHFYHSDCIVPWLR+H TCP+C
Sbjct: 180 IEALPTVKVTESQLRNEPICAVCKEEFEAGGEVRELPCRHFYHSDCIVPWLRLHKTCPVC 239

Query: 61  RYTLQ------NAIDGESSEESVEEGDGRGNGW-WNVVRSWWPFRVIGD 103
           R  +       NA   +    S EE       W WN + S+WPFR   D
Sbjct: 240 RQEIDESGDFANATFEDDHGRSFEEFVSNSLRWRWNQILSFWPFRAFID 288

[Close]
BLAST of Cp4.1LG01g02150 vs. TrEMBL
Match: A0A067KV75_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05040 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.6e-25
Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 1 

Query: 1   METIRRVKITESHLQKDSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPIC 60
           +E +  VKIT+ HL KDS+C +CK+EFE+GG VRELPC+H YHSDCIVPWL +HNTCP+C
Sbjct: 163 IEALAMVKITQEHLIKDSTCPVCKDEFELGGEVRELPCKHLYHSDCIVPWLSMHNTCPVC 222

Query: 61  RYTLQNAIDGESSEES-----VEEGDGRGNGWWNVVRSWWPFRVIGDLARRLGFADYGDN 119
           RY + +  +    +E+      EE     N   N   S WP R      +R  + D+ DN
Sbjct: 223 RYEVHDGFEDHIQQENGQSFGFEEVANSMNWLRNQFVSLWPVRAFSVWRQR--YLDFLDN 282

[Close]
BLAST of Cp4.1LG01g02150 vs. TrEMBL
Match: A0A0B2R4B1_GLYSO (E3 ubiquitin-protein ligase RING1 OS=Glycine soja GN=glysoja_011279 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.0e-24
Identity = 55/135 (40.74%), Postives = 80/135 (59.26%), Query Frame = 1 

Query: 7   VKITESHLQKDSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPICRYTLQN 66
           VK+T++HL  D +C ICK+EF +    RELPC+HFYHSDCI+PWLR+HNTCP+CRY LQ 
Sbjct: 189 VKLTQTHLASDPNCPICKDEFLLDMEARELPCKHFYHSDCIIPWLRMHNTCPVCRYELQG 248

Query: 67  AIDGESSE----ESVEEGDGRGNGW-WNVVRSWWPFRVIGDLARRLGFADYGDNLLALEK 126
                ++     ++ +E       W WN + S+WP R + D A  L + ++ +N  A   
Sbjct: 249 VTSANNANYYRLQNDDENAASSLVWIWNQLASFWPIRSVLDWA--LSYFNFQENHFARRH 308

Query: 127 IAESQKEPYFQNSTA 137
           +      P  + ST+
Sbjct: 309 LTHLISSPPPRPSTS 321

[Close]
BLAST of Cp4.1LG01g02150 vs. TrEMBL
Match: B9GU61_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0002s08630g PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-23
Identity = 52/102 (50.98%), Postives = 67/102 (65.69%), Query Frame = 1 

Query: 1   METIRRVKITESHLQKDSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPIC 60
           ++TI  VKI  SHL  DS C +C EEF++GG  RELPC+H YHS+CIVPWLR+HN+CP+C
Sbjct: 216 IDTIPTVKIEASHLVNDSHCPVCMEEFKVGGEARELPCKHIYHSECIVPWLRLHNSCPVC 275

Query: 61  RYTLQ-NAIDGESSEESVEEGDGRG---NGWWNVVRSWWPFR 99
           R  L  N+      E+  E+G GR    + W   + S WPFR
Sbjct: 276 RKELPVNSESSAQDEDECEDGGGRRGRCSRWRRQLSSLWPFR 317

[Close]
BLAST of Cp4.1LG01g02150 vs. TAIR10
Match: AT1G68180.1 (AT1G68180.1 RING/U-box superfamily protein)

HSP 1 Score: 104.4 bits (259), Expect = 6.5e-23
Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 1 

Query: 1   METIRRVKITESHLQKDSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPIC 60
           +E +R V IT+  L K+  CAICKEEFE+G   +EL C H YHS CIV WL IHNTCPIC
Sbjct: 119 IEAVRTVIITDEDLVKEKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSWLNIHNTCPIC 178

Query: 61  RYTLQNAIDGESSEESVEEG------DGRGNGWWNVVRSWWPFRVIGDLARRL 108
           R+ +   +    SE +V+EG      + R N +   V S WP R++ D    L
Sbjct: 179 RFEVNLGV----SESNVDEGGSYNIDNDRSNRFRTRVCSLWPLRMMIDWVHNL 227

[Close]
BLAST of Cp4.1LG01g02150 vs. TAIR10
Match: AT2G40830.2 (AT2G40830.2 RING-H2 finger C1A)

HSP 1 Score: 98.6 bits (244), Expect = 3.6e-21
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 1 

Query: 1   METIRRVKITESHLQK-DSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPI 60
           ++ +  +KI + HL+  DS+C +CK+EFE+G   +++PC H YHSDCIVPWL  HN+CP+
Sbjct: 170 IDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPV 229

Query: 61  CRYTLQNAIDGESSE--------------ESVEEGDGRGNGWWNVVRSWWPFRVIG 102
           CR  L +A    SS+               S       GN   N   S+WPFR  G
Sbjct: 230 CRQELPSASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSG 285

[Close]
BLAST of Cp4.1LG01g02150 vs. TAIR10
Match: AT3G56580.2 (AT3G56580.2 RING/U-box superfamily protein)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-20
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = 1 

Query: 1   METIRRVKITESHLQK-DSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPI 60
           ++ +  +KIT+ HL+  DS C +CK+EFE+    +++PC H YHSDCIVPWL  HN+CP+
Sbjct: 166 IDALPTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPV 225

Query: 61  CRYTLQNAIDGESSEESVEEG-DGRGNG-WWNVVRSWWPFR 99
           CR  L +     S++ S     +GR N    N+  + WPFR
Sbjct: 226 CRKELPSRGSSSSTQSSQNRSTNGRENSRRRNIFSNLWPFR 266

[Close]
BLAST of Cp4.1LG01g02150 vs. TAIR10
Match: AT1G60360.1 (AT1G60360.1 RING/U-box superfamily protein)

HSP 1 Score: 94.4 bits (233), Expect = 6.7e-20
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 1 

Query: 1   METIRRVKITESHLQKD-SSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPI 60
           + ++  VKIT  HL  D S C +C EEF +GG   ELPC+H YH DCIVPWLR++N+CPI
Sbjct: 204 INSLPSVKITPQHLTNDMSQCTVCMEEFIVGGDATELPCKHIYHKDCIVPWLRLNNSCPI 263

Query: 61  CR--YTLQNAIDGESSEES---VEEGDGRGNGWWNVVRSWWPFR 99
           CR    L N +  ES E S    ++   R    W  + + WPFR
Sbjct: 264 CRRDLPLVNTV-AESRERSNPIRQDMPERRRPRWMQLGNIWPFR 306

[Close]
BLAST of Cp4.1LG01g02150 vs. TAIR10
Match: AT3G46620.1 (AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-18
Identity = 35/75 (46.67%), Postives = 54/75 (72.00%), Query Frame = 1 

Query: 1   METIRRVKITESHLQKDSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPIC 60
           +E++ RV+I++ H + +++CA+C E FE G   RE+PC+H +H DCIVPWL I N+CP+C
Sbjct: 196 IESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVC 255

Query: 61  RYTLQNAIDGESSEE 76
           R+ L +     S+EE
Sbjct: 256 RFELPSDPIQRSNEE 270

[Close]
BLAST of Cp4.1LG01g02150 vs. NCBI nr
Match: gi|778680175|ref|XP_011651263.1| (PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X2 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 1.3e-44
Identity = 82/133 (61.65%), Postives = 100/133 (75.19%), Query Frame = 1 

Query: 1   METIRRVKITESHLQKDSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPIC 60
           +E I RV+IT  HL+KDS+CAICKEEFE+G  VRELPC+HFYHSDC++PWLR+HNTCP+C
Sbjct: 107 IEEIPRVRITGKHLEKDSNCAICKEEFEMGEEVRELPCKHFYHSDCVIPWLRMHNTCPVC 166

Query: 61  RYTLQNAID------------GESSEESVEEGDGRGNGWWNVVRSWWPFRVIGDLARRLG 120
           RYTL+N  D             E  EE  EEG+ RGNGWWN+V  WWPFR++GD ARRL 
Sbjct: 167 RYTLENIGDEGSGSGFNGGRGEEFREEEEEEGERRGNGWWNLVCCWWPFRLVGDWARRLR 226

Query: 121 FADYGDNLLALEK 122
           FAD GD+  A+E+
Sbjct: 227 FADSGDSFFAVER 239

[Close]
BLAST of Cp4.1LG01g02150 vs. NCBI nr
Match: gi|700202433|gb|KGN57566.1| (hypothetical protein Csa_3G214060 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 1.3e-44
Identity = 82/133 (61.65%), Postives = 100/133 (75.19%), Query Frame = 1 

Query: 1   METIRRVKITESHLQKDSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPIC 60
           +E I RV+IT  HL+KDS+CAICKEEFE+G  VRELPC+HFYHSDC++PWLR+HNTCP+C
Sbjct: 107 IEEIPRVRITGKHLEKDSNCAICKEEFEMGEEVRELPCKHFYHSDCVIPWLRMHNTCPVC 166

Query: 61  RYTLQNAID------------GESSEESVEEGDGRGNGWWNVVRSWWPFRVIGDLARRLG 120
           RYTL+N  D             E  EE  EEG+ RGNGWWN+V  WWPFR++GD ARRL 
Sbjct: 167 RYTLENIGDEGSGSGFNGGRGEEFREEEEEEGERRGNGWWNLVCCWWPFRLVGDWARRLR 226

Query: 121 FADYGDNLLALEK 122
           FAD GD+  A+E+
Sbjct: 227 FADSGDSFFAVER 239

[Close]
BLAST of Cp4.1LG01g02150 vs. NCBI nr
Match: gi|449464484|ref|XP_004149959.1| (PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X1 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 2.2e-44
Identity = 82/132 (62.12%), Postives = 99/132 (75.00%), Query Frame = 1 

Query: 1   METIRRVKITESHLQKDSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPIC 60
           +E I RV+IT  HL+KDS+CAICKEEFE+G  VRELPC+HFYHSDC++PWLR+HNTCP+C
Sbjct: 107 IEEIPRVRITGKHLEKDSNCAICKEEFEMGEEVRELPCKHFYHSDCVIPWLRMHNTCPVC 166

Query: 61  RYTLQNAID------------GESSEESVEEGDGRGNGWWNVVRSWWPFRVIGDLARRLG 120
           RYTL+N  D             E  EE  EEG+ RGNGWWN+V  WWPFR++GD ARRL 
Sbjct: 167 RYTLENIGDEGSGSGFNGGRGEEFREEEEEEGERRGNGWWNLVCCWWPFRLVGDWARRLR 226

[Close]
BLAST of Cp4.1LG01g02150 vs. NCBI nr
Match: gi|778680186|ref|XP_011651266.1| (PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X3 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 2.2e-44
Identity = 82/132 (62.12%), Postives = 99/132 (75.00%), Query Frame = 1 

Query: 1   METIRRVKITESHLQKDSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPIC 60
           +E I RV+IT  HL+KDS+CAICKEEFE+G  VRELPC+HFYHSDC++PWLR+HNTCP+C
Sbjct: 107 IEEIPRVRITGKHLEKDSNCAICKEEFEMGEEVRELPCKHFYHSDCVIPWLRMHNTCPVC 166

Query: 61  RYTLQNAID------------GESSEESVEEGDGRGNGWWNVVRSWWPFRVIGDLARRLG 120
           RYTL+N  D             E  EE  EEG+ RGNGWWN+V  WWPFR++GD ARRL 
Sbjct: 167 RYTLENIGDEGSGSGFNGGRGEEFREEEEEEGERRGNGWWNLVCCWWPFRLVGDWARRLR 226

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BLAST of Cp4.1LG01g02150 vs. NCBI nr
Match: gi|659112141|ref|XP_008456083.1| (PREDICTED: uncharacterized protein LOC103496124 isoform X2 [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 3.7e-44
Identity = 84/137 (61.31%), Postives = 100/137 (72.99%), Query Frame = 1 

Query: 1   METIRRVKITESHLQKDSSCAICKEEFEIGGAVRELPCRHFYHSDCIVPWLRIHNTCPIC 60
           +E I RV+IT  HL+KDS+CAICKEEFE+G  VRELPC+HFYHSDC+VPWLR+HNTCP+C
Sbjct: 107 IEEIPRVRITGKHLEKDSNCAICKEEFEMGEEVRELPCKHFYHSDCVVPWLRMHNTCPVC 166

Query: 61  RYTLQNAID---------------GESSEESVE-EGDGRGNGWWNVVRSWWPFRVIGDLA 120
           RYTL+N  D               GE  EE  E EG+GRGNGWWN+V  WWP R+IGD A
Sbjct: 167 RYTLENIGDEGSGSGFNGGRGEELGEEEEEEEEGEGEGRGNGWWNLVCCWWPLRLIGDWA 226

Query: 121 RRLGFADYGDNLLALEK 122
           RRL FAD GD+   +E+
Sbjct: 227 RRLRFADSGDSFFVVER 243

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g02150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RHC1A_ARATH6.3e-2039.66Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana GN=RHC1A PE=2... [more]
RDUF1_ARATH2.3e-1746.67E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1[more]
RNG1L_ARATH6.6e-1735.19E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
RDUF2_ARATH1.1e-1640.00E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1[more]
RING1_GOSHI2.5e-1633.88E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
BLAST of Cp4.1LG01g02150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LC10_CUCSA8.8e-4561.65Uncharacterized protein OS=Cucumis sativus GN=Csa_3G214060 PE=4 SV=1[more]
W9SBH9_9ROSA1.6e-2552.29Rhomboid-like protein OS=Morus notabilis GN=L484_024195 PE=3 SV=1[more]
A0A067KV75_JATCU4.6e-2546.34Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05040 PE=4 SV=1[more]
A0A0B2R4B1_GLYSO5.0e-2440.74E3 ubiquitin-protein ligase RING1 OS=Glycine soja GN=glysoja_011279 PE=3 SV=1[more]
B9GU61_POPTR1.9e-2350.98Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0002s08630g PE=4 SV=1[more]
BLAST of Cp4.1LG01g02150 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68180.16.5e-2346.02 RING/U-box superfamily protein[more]
AT2G40830.23.6e-2139.66 RING-H2 finger C1A[more]
AT3G56580.21.4e-2042.57 RING/U-box superfamily protein[more]
AT1G60360.16.7e-2046.15 RING/U-box superfamily protein[more]
AT3G46620.11.3e-1846.67 zinc finger (C3HC4-type RING finger) family protein[more]
BLAST of Cp4.1LG01g02150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778680175|ref|XP_011651263.1|1.3e-4461.65PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X2 [Cucumis sativus][more]
gi|700202433|gb|KGN57566.1|1.3e-4461.65hypothetical protein Csa_3G214060 [Cucumis sativus][more]
gi|449464484|ref|XP_004149959.1|2.2e-4462.12PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X1 [Cucumis sativus][more]
gi|778680186|ref|XP_011651266.1|2.2e-4462.12PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X3 [Cucumis sativus][more]
gi|659112141|ref|XP_008456083.1|3.7e-4461.31PREDICTED: uncharacterized protein LOC103496124 isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g02150.1Cp4.1LG01g02150.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 19..61
score: 8.5
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 20..60
score: 2.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 20..61
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 15..64
score: 8.2
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 1..149
score: 4.1
NoneNo IPR availablePANTHERPTHR22763:SF88RING/U-BOX DOMAIN-CONTAINING PROTEINcoord: 1..149
score: 4.1
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 4..67
score: 6.6