CsaV3_3G018890 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TAATAATCTAGATTGTAATTATGAGTAATAACAACACAATGTTTTCTCTATCTCACAAATTGCCTTCACAAATTGCACATACATATTTTGACTAGTGACTCATCTAAGTGCATTTCGACTACCATCAATAATACTTTAATTTGCACCCTTAAGCCACCAATGTTTTGACAATTGATGAAATTACAAAATAAGAAACAATACATTTACTAGAGGGGATATATGGGTTGATAGACATTGCATGAAATTTAAGAAAACCTATAAAAATTGCCTACTTTTTCTTCATTCCACAATCCCCCTAATAAGAATCCTCCTTTTTTGTTCACAAGGATTGCATTTTTCTTTGTAAACTCCTCTCCCCAAATGTCTCCAACAACTAAAAACTCATACTTTTTCTTCACCATTTAACCAACAACTCCCATTATCCGGAAATTTGATTAAAACACCCCAATTCAATGTTCAATATGATTTTTGTTTTTTACTCTTTGATGATGTGCTTACATCATGGTAAAGCAATTTTAGACAATTACTCTTTTGTGTTTTTCTCATATTTCTTTTTGCATCAAACTTCCTTGTGTCTTCATCTTCCTCCTGGCTGAGTTCTTCTCTCAACAATAGCGATTGTGGAAGAGTAAGATTGTGAAAGAAAGAGGGAGAGAGGGGAGAGAGGGGAGAGAAGAGCGAAAGGGTCACCCACGCTCGCGGGAGTTTCATTTCGCAACTTCACCTAAATTTGATTTTTTACCATCCCTCAAAAGCTAACCTTCATCTTCTCCATCCTCTTCATCTCTTCGAATTCCATCAAAATCTCACATCCACAACCTAATAAGTTGTCAATGCAAACCTTTCATTTCTTCAGTTCAAAGTGCAAAAAAGTATCAACAAACCACAAAAGCAGAGCTTCAACAACAACAAGAAACTCCAATTCAATTTCCCTTTCCTCCACGACAACTTGTTTTGTAATCTTATGTTCAAACAAAATCCAAGTTACGACAAGGAATAACTTTCCCATCACTTCTCTTCCTCCCTTTCCCTATAAAATCCTCTCTTTCTTCCTTTCTCAATGTCTCCATCATACCTTCAGTTCTTAGACTATGTCCATCCCTCAGCCTCAAAACCCCCGATCTCGAGTCGTCGTCAATGGCGGCTTCACCAGGACCACCAATATGCATTACTACTGGTGCCGAATTTGTCGAAGAATCATCAGAATTAGCTTAGGAAACCCTTTAGAAATTTCCATTACTTGCCCCTTTTGCTCCAGAAACCTCCGCCATGAATTGGACGTAGCCAGGGCTCGAAATTTCCCTCGTCTCCCCGCCATTTCCCCTCCGATTGTCCAACGGTGGGGATTCGAAGAAACCGATGCGTCATGGATCACGCTCCAATTCCCGAGACCAGCGGTAAATTCCGGGATTGAGGAGATTCCAAGGGTGAGAATTACGGGGAAGCATTTGGAGAAGGATTCGAATTGTGCGATTTGTAAAGAGGAATTTGAAATGGGAGAGGAAGTTAGAGAGTTGCCTTGCAAGCATTTTTACCATTCGGATTGTGTTATTCCTTGGTTGAGAATGCATAACACTTGCCCTGTTTGCCGGTATACGTTGGAGAATATCGGCGACGAGGGGAGTGGGAGCGGTTTTAATGGCGGAAGGGGTGAGGAATTCCGGGAAGAAGAAGAAGAAGAAGGTGAAAGAAGAGGGAATGGATGGTGGAACTTGGTGTGTTGCTGGTGGCCGTTCCGTTTAGTCGGCGATTGGGCTCGCCGTCTCCGGTTTGCTGATTCGGGTGATAGTTTCTTCGCCGTTGAACGTAAGGTTTTTTCTTTTCAAGTTTCTTCAGAGATGGATGGAGTTGGGAAACAAAATATAAATAACAAACCATTTTTTTATAATCAAAATGAAATCGTTGAGATTATTACAATTATTTTAAATTTTATCTTTAATTTTGTAATTTTAGATTAGATTACTGTGTTTTGAATTCTCTTGTAACCATTTATATTTTTTACTTTTGCTGAGAATTTTTCAAAAAAAAAAAAAATACAAACTACACAATTTATAAACACAACTCCGTATTTGATAAAAGATTAAATGTTAATTTGTATTGGTAGAGTTTGACATAAAATGTCTAATTTCAATCTATATACTTTGGTAGTTTAATATCTACTAGCATTCTAACCATAAATTTTAATAACACATTCACGTAAATATTATAAATATTATTATTATTGTCAAACCAAATAGAATAAAAAATAATTTTGAGAACTATATTAAAAATGTATTGAATACATTCAAACAAATACTAAAATATAATTTTCTTAAAAAACAAAAAAGTGACAGAAATCCATGAAGATCCTTACACAAGACAACTAGATTCAAAATGACAAAATGGACCATCAAAATCAAACAAGTCAACTTAGAAAAGGACAAAATTTGACCATCAAAATCAAACTAATCAAATTCACAAAAACATAACTAAACTCTAACTCAAAACAATCAAATAGACAAAAAAAAAAAAAATAATAAAAAAAAAAAGAGTTTGCAAAATCTAAATATTTAAATCTAATGTTAATTAATGTGTACTGGTTGGAGTTTGCAGCAGGTTCGTGGATGTACTCTTGGCTAGCCAATTAACCCACCCCCGGTAATATCTACTACATTCCTTACTCTTCATTTCCTTTCATTTCTTAACCAATTGATTAGGTACATGAAATTGTGTTGGATTTAGTAATGTAATTAACAAGCATTTTGCTTTCTTATTCCATTTCTTTCTTGTAAGTAACTACCAAAATTGCAGACAGTCAAAAGGAACCTTTGTTTAAGAACTGTACATCTTTTACTAAAGAAAATAAGACTATATAATAATAGTTCCTTTTGAGGTCTGCAACTTCAAATCTCTCCTTTCATAAATTAATTATATTTTTTTCTAAAACATATATAATTTAAACCCAACCAAGGAGGAGAGTTGGTTCCCTTTGGAAAACAACATCCCTATTTCCCTGCGTAGGGTTAATATAAAGGGAAATATCACCTTTTGTCTTCTTCTTATTCTTCTTCTTATTCTTCTTCGGACTCTCTATACTGACTTTCTTTGTTCTTGAGGAGTGAACCAAAAATGAGTTTCCCATCTGATTGTATTCTTCAGACTATTGTATGTTGATTATGTAGGTGATAGATGTAAATGAGTTGTAGGAGAGAGCGGTCAAGACCCGTTATTCTTAATCCTACAAAGATGAGAAGGGAATGAGTTGTGCTTTTGTAGATATAAATGAATTGATTTTGTACTAAGAAATACTACTACTACGTGCTTTCAACCTATAATCAAGTAAAAAATATGTCAAACCTTACATGAACTGGATGTGACGGATCTTCATTTGTCTGCCCTGATTTGGAGCGAAAAGAAGGCTTGGGTTTAGGTAACAGATCGGGGGGCAACAGTGGTGGAGACTCTACTGGAGATGCACGTGGAGAATAAACACGAGGTTGATTAGCTGGAGGAACGATCAGTCTGGTAGACTTAGGATACGAGATTGGTGGTATTGAATGTTCATGAGGGGAATTTGCAGGAACCATAGAAGGGTTCGGAGACGAGCTTTTGCAATTTGCATGAGGTGGGGAATGGTTTGCTGGTGGTCGCATGGATCTCAACGGATGTGGGCCACTCGGTACTTCTACATGATTGCCAGGCGCTGGGGCAGGGGCTGGAGAAAAACTTGGTGGCATTGCCTTGGAGGTTCTCTTCGGATAAGAAGACAAACTGACACTCTTGACTTCTCCAAAAACAGAATAATCAAGGCCAAGATTTCTTTCAGGAGAGGTGTTGATGATTGCAGCCAACTGCTGTAATCTCTGTGACGTAATGCGTCCCAATTCCGACGTAATAGAAGCCTGAACAATTACGAGTGGTTGCACTGTCGAGCCAATCTTGTTTGTTATTTGCAAATACACATTCTGTATAACAAGAAAAGAAAGAGTAGAATCCAACATCCATTAATCAACTCCAGTCCCAGATACATAAAACTAACAACAATAATATAAAACTCATCTCAAGTCTAAACTTATGATCTCAAGTTCTAGAGATAATATTTGATAAATTCCATCCATAGCAGAAAGTATAAGTTTAACTTAAATAAGTTTTTGTACCTCATAAGACCTCAGACGCAATCCAAACTTTAGCTGGCTCTTGAACTTGGCAAAGTTGTCAAGTATTTCGGAAATGGAGTTAGTAAGAGTGAAGTTAAATACGATCTGGGGAAACTCCCAAATCGAAGCATGTTGAAATGGGATTATAGAAATCCCCCCTGGAAACTTGAGAATTTGAAGTGTCGATGGCTGTCCAAAAATTGATGTCGTCAAAGTAAGGTTGGATTCCGAAAGGAAAAAGTCATATAAAGATGATCTCAGCAGACTTAAGGACACTGGATTTATTGGAGCAGTTATGTATTCAGAAAGAAGACCGAAAACCACGTAAGTCCTGTTTGACTCACCTATATCATGCATGGATAGAATGGAAACCTGGTAACATAAACGACAACCCTTAGGCATAGAAGACCTTACTAGTAAACTAAATCCAAAAACAGTAAAGAAGCGCAAAAC ATGTCCATCCCTCAGCCTCAAAACCCCCGATCTCGAGTCGTCGTCAATGGCGGCTTCACCAGGACCACCAATATGCATTACTACTGGTGCCGAATTTGTCGAAGAATCATCAGAATTAGCTTAGGAAACCCTTTAGAAATTTCCATTACTTGCCCCTTTTGCTCCAGAAACCTCCGCCATGAATTGGACGTAGCCAGGGCTCGAAATTTCCCTCGTCTCCCCGCCATTTCCCCTCCGATTGTCCAACGGTGGGGATTCGAAGAAACCGATGCGTCATGGATCACGCTCCAATTCCCGAGACCAGCGGTAAATTCCGGGATTGAGGAGATTCCAAGGGTGAGAATTACGGGGAAGCATTTGGAGAAGGATTCGAATTGTGCGATTTGTAAAGAGGAATTTGAAATGGGAGAGGAAGTTAGAGAGTTGCCTTGCAAGCATTTTTACCATTCGGATTGTGTTATTCCTTGGTTGAGAATGCATAACACTTGCCCTGTTTGCCGGTATACGTTGGAGAATATCGGCGACGAGGGGAGTGGGAGCGGTTTTAATGGCGGAAGGGGTGAGGAATTCCGGGAAGAAGAAGAAGAAGAAGGTGAAAGAAGAGGGAATGGATGGTGGAACTTGGTGTGTTGCTGGTGGCCGTTCCGTTTAGTCGGCGATTGGGCTCGCCGTCTCCGGTTTGCTGATTCGGGTGATAGTTTCTTCGCCGTTGAACCAGGTTCGTGGATGTACTCTTGGCTAGCCAATTAA ATGTCCATCCCTCAGCCTCAAAACCCCCGATCTCGAGTCGTCGTCAATGGCGGCTTCACCAGGACCACCAATATGCATTACTACTGGTGCCGAATTTGTCGAAGAATCATCAGAATTAGCTTAGGAAACCCTTTAGAAATTTCCATTACTTGCCCCTTTTGCTCCAGAAACCTCCGCCATGAATTGGACGTAGCCAGGGCTCGAAATTTCCCTCGTCTCCCCGCCATTTCCCCTCCGATTGTCCAACGGTGGGGATTCGAAGAAACCGATGCGTCATGGATCACGCTCCAATTCCCGAGACCAGCGGTAAATTCCGGGATTGAGGAGATTCCAAGGGTGAGAATTACGGGGAAGCATTTGGAGAAGGATTCGAATTGTGCGATTTGTAAAGAGGAATTTGAAATGGGAGAGGAAGTTAGAGAGTTGCCTTGCAAGCATTTTTACCATTCGGATTGTGTTATTCCTTGGTTGAGAATGCATAACACTTGCCCTGTTTGCCGGTATACGTTGGAGAATATCGGCGACGAGGGGAGTGGGAGCGGTTTTAATGGCGGAAGGGGTGAGGAATTCCGGGAAGAAGAAGAAGAAGAAGGTGAAAGAAGAGGGAATGGATGGTGGAACTTGGTGTGTTGCTGGTGGCCGTTCCGTTTAGTCGGCGATTGGGCTCGCCGTCTCCGGTTTGCTGATTCGGGTGATAGTTTCTTCGCCGTTGAACCAGGTTCGTGGATGTACTCTTGGCTAGCCAATTAA MSIPQPQNPRSRVVVNGGFTRTTNMHYYWCRICRRIIRISLGNPLEISITCPFCSRNLRHELDVARARNFPRLPAISPPIVQRWGFEETDASWITLQFPRPAVNSGIEEIPRVRITGKHLEKDSNCAICKEEFEMGEEVRELPCKHFYHSDCVIPWLRMHNTCPVCRYTLENIGDEGSGSGFNGGRGEEFREEEEEEGERRGNGWWNLVCCWWPFRLVGDWARRLRFADSGDSFFAVEPGSWMYSWLAN
BLAST of CsaV3_3G018890 vs. NCBI nr
Match: XP_004149959.1 (PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X1 [Cucumis sativus] >XP_011651258.1 PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X1 [Cucumis sativus] >XP_011651259.1 PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X1 [Cucumis sativus] >XP_011651260.1 PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X1 [Cucumis sativus] >XP_011651261.1 PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X1 [Cucumis sativus] >XP_011651262.1 PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X1 [Cucumis sativus]) HSP 1 Score: 483.0 bits (1242), Expect = 6.0e-133 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. NCBI nr
Match: XP_011651263.1 (PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X2 [Cucumis sativus] >XP_011651264.1 PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X2 [Cucumis sativus] >XP_011651265.1 PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X2 [Cucumis sativus]) HSP 1 Score: 472.6 bits (1215), Expect = 8.1e-130 Identity = 247/249 (99.20%), Postives = 247/249 (99.20%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. NCBI nr
Match: XP_011651266.1 (PREDICTED: E3 ubiquitin-protein ligase RNF126 isoform X3 [Cucumis sativus]) HSP 1 Score: 461.1 bits (1185), Expect = 2.4e-126 Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. NCBI nr
Match: KGN57566.1 (hypothetical protein Csa_3G214060 [Cucumis sativus]) HSP 1 Score: 460.3 bits (1183), Expect = 4.2e-126 Identity = 240/243 (98.77%), Postives = 240/243 (98.77%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. NCBI nr
Match: XP_008456082.1 (PREDICTED: uncharacterized protein LOC103496124 [Cucumis melo]) HSP 1 Score: 441.8 bits (1135), Expect = 1.5e-120 Identity = 222/253 (87.75%), Postives = 226/253 (89.33%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. TAIR10
Match: AT1G68180.1 (RING/U-box superfamily protein) HSP 1 Score: 137.1 bits (344), Expect = 1.5e-32 Identity = 82/205 (40.00%), Postives = 109/205 (53.17%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. TAIR10
Match: AT2G40830.2 (RING-H2 finger C1A) HSP 1 Score: 107.8 bits (268), Expect = 9.5e-24 Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. TAIR10
Match: AT3G56580.2 (RING/U-box superfamily protein) HSP 1 Score: 105.1 bits (261), Expect = 6.2e-23 Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. TAIR10
Match: AT3G10815.1 (RING/U-box superfamily protein) HSP 1 Score: 103.6 bits (257), Expect = 1.8e-22 Identity = 56/170 (32.94%), Postives = 80/170 (47.06%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. TAIR10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein) HSP 1 Score: 100.9 bits (250), Expect = 1.2e-21 Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. Swiss-Prot
Match: sp|O22197|RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.7e-22 Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. Swiss-Prot
Match: sp|Q94AK4|RZF1_ARATH (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 1.1e-21 Identity = 41/81 (50.62%), Postives = 57/81 (70.37%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. Swiss-Prot
Match: sp|Q7T0Q3|R126A_XENLA (E3 ubiquitin-protein ligase RNF126-A OS=Xenopus laevis OX=8355 GN=rnf126-a PE=2 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 2.1e-20 Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. Swiss-Prot
Match: sp|Q940T5|RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 2.1e-20 Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. Swiss-Prot
Match: sp|Q9SNB6|RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 2.7e-20 Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. TrEMBL
Match: tr|A0A0A0LC10|A0A0A0LC10_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G214060 PE=4 SV=1) HSP 1 Score: 460.3 bits (1183), Expect = 2.8e-126 Identity = 240/243 (98.77%), Postives = 240/243 (98.77%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. TrEMBL
Match: tr|A0A1S3C2I0|A0A1S3C2I0_CUCME (uncharacterized protein LOC103496124 OS=Cucumis melo OX=3656 GN=LOC103496124 PE=4 SV=1) HSP 1 Score: 441.8 bits (1135), Expect = 1.0e-120 Identity = 222/253 (87.75%), Postives = 226/253 (89.33%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. TrEMBL
Match: tr|V7BR96|V7BR96_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G213500g PE=4 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 7.5e-39 Identity = 97/273 (35.53%), Postives = 122/273 (44.69%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. TrEMBL
Match: tr|A0A151T7Z5|A0A151T7Z5_CAJCA (RING finger protein 115 family OS=Cajanus cajan OX=3821 GN=KK1_017722 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 1.7e-38 Identity = 88/242 (36.36%), Postives = 116/242 (47.93%), Query Frame = 0
BLAST of CsaV3_3G018890 vs. TrEMBL
Match: tr|K7M9N3|K7M9N3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100785893 PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 6.3e-38 Identity = 96/294 (32.65%), Postives = 122/294 (41.50%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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