Lsi04G000180 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATGTAACCGGCAAAAAACAGGCAAAAAGAAGCAAGAAATCTGCGGCGGCCGATTTCAAAGTCGTGTACATTTCAAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTCCGATCTCTCGTTCAGAAACTCACCGGTCAGGATTCCGATGCCGAGAGGTTCATGGAACTGATCGCCTCCGCTGCTAGTGATCGGAATCTTCGATCGTCAGCGTCGTTCCTCGACTACCAACTCCTCGGCGACGACGATCTAATGGTGGCAGGAAAGGTCGAAACGGCGGCGTATGAATCGTCGGTTGCGGCTCTGCCGCCGCCGGATGATTTGGCGGTTCTGCAGAATTTCGATGCAAGTTTTGCAGAAATGTTCCATGGCTTTTGGTATGATTCTTCTACGGCACAAACTGAGGTGCCAGGTTTAAGTGCACTGCTGTAG ATGAATGTAACCGGCAAAAAACAGGCAAAAAGAAGCAAGAAATCTGCGGCGGCCGATTTCAAAGTCGTGTACATTTCAAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTCCGATCTCTCGTTCAGAAACTCACCGGTCAGGATTCCGATGCCGAGAGGTTCATGGAACTGATCGCCTCCGCTGCTAGTGATCGGAATCTTCGATCGTCAGCGTCGTTCCTCGACTACCAACTCCTCGGCGACGACGATCTAATGGTGGCAGGAAAGGTCGAAACGGCGGCGTATGAATCGTCGGTTGCGGCTCTGCCGCCGCCGGATGATTTGGCGGTTCTGCAGAATTTCGATGCAAGTTTTGCAGAAATGTTCCATGGCTTTTGGTATGATTCTTCTACGGCACAAACTGAGGTGCCAGGTTTAAGTGCACTGCTGTAG ATGAATGTAACCGGCAAAAAACAGGCAAAAAGAAGCAAGAAATCTGCGGCGGCCGATTTCAAAGTCGTGTACATTTCAAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTCCGATCTCTCGTTCAGAAACTCACCGGTCAGGATTCCGATGCCGAGAGGTTCATGGAACTGATCGCCTCCGCTGCTAGTGATCGGAATCTTCGATCGTCAGCGTCGTTCCTCGACTACCAACTCCTCGGCGACGACGATCTAATGGTGGCAGGAAAGGTCGAAACGGCGGCGTATGAATCGTCGGTTGCGGCTCTGCCGCCGCCGGATGATTTGGCGGTTCTGCAGAATTTCGATGCAAGTTTTGCAGAAATGTTCCATGGCTTTTGGTATGATTCTTCTACGGCACAAACTGAGGTGCCAGGTTTAAGTGCACTGCTGTAG MNVTGKKQAKRSKKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIASAASDRNLRSSASFLDYQLLGDDDLMVAGKVETAAYESSVAALPPPDDLAVLQNFDASFAEMFHGFWYDSSTAQTEVPGLSALL
BLAST of Lsi04G000180 vs. Swiss-Prot
Match: SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 2.9e-06 Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 1
BLAST of Lsi04G000180 vs. TrEMBL
Match: D1MWZ4_CITLA (Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris GN=CitSIB PE=2 SV=1) HSP 1 Score: 243.8 bits (621), Expect = 1.3e-61 Identity = 129/146 (88.36%), Postives = 136/146 (93.15%), Query Frame = 1
BLAST of Lsi04G000180 vs. TrEMBL
Match: A0A0A0KTR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623915 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 5.9e-43 Identity = 101/146 (69.18%), Postives = 120/146 (82.19%), Query Frame = 1
BLAST of Lsi04G000180 vs. TrEMBL
Match: A0A067L8W8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24548 PE=4 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 6.4e-13 Identity = 60/145 (41.38%), Postives = 83/145 (57.24%), Query Frame = 1
BLAST of Lsi04G000180 vs. TrEMBL
Match: M5XE50_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013276mg PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 1.9e-09 Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1
BLAST of Lsi04G000180 vs. TrEMBL
Match: W9RNW5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023976 PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 9.5e-09 Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 1
BLAST of Lsi04G000180 vs. TAIR10
Match: AT3G56710.1 (AT3G56710.1 sigma factor binding protein 1) HSP 1 Score: 53.1 bits (126), Expect = 1.6e-07 Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 1
BLAST of Lsi04G000180 vs. NCBI nr
Match: gi|270309002|dbj|BAI52954.1| (sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris]) HSP 1 Score: 243.8 bits (621), Expect = 1.8e-61 Identity = 129/146 (88.36%), Postives = 136/146 (93.15%), Query Frame = 1
BLAST of Lsi04G000180 vs. NCBI nr
Match: gi|659092245|ref|XP_008446972.1| (PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo]) HSP 1 Score: 191.0 bits (484), Expect = 1.4e-45 Identity = 108/146 (73.97%), Postives = 120/146 (82.19%), Query Frame = 1
BLAST of Lsi04G000180 vs. NCBI nr
Match: gi|449449264|ref|XP_004142385.1| (PREDICTED: uncharacterized protein LOC101217123 [Cucumis sativus]) HSP 1 Score: 181.8 bits (460), Expect = 8.5e-43 Identity = 101/146 (69.18%), Postives = 120/146 (82.19%), Query Frame = 1
BLAST of Lsi04G000180 vs. NCBI nr
Match: gi|802574171|ref|XP_012068696.1| (PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]) HSP 1 Score: 82.0 bits (201), Expect = 9.2e-13 Identity = 60/145 (41.38%), Postives = 83/145 (57.24%), Query Frame = 1
BLAST of Lsi04G000180 vs. NCBI nr
Match: gi|645251336|ref|XP_008231630.1| (PREDICTED: uncharacterized protein LOC103330797 [Prunus mume]) HSP 1 Score: 72.4 bits (176), Expect = 7.3e-10 Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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