Cucsa.307850 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTATGAAAATGGAGGATATACCTTACATGTACATATGTGTGTAAGTTGATCTAACCATATATATATATATATTATTTTGTTCCATTTGGGTGTGGGGGATTAGGGGTCCTTTTAAGGACATCTGGAAAGAAAGAAGGTTCTATACCTTTTTCCAATTTTCTCTTTGCTTCGTTTTCATTGGGAATTTTTCCTTTCCCTTCAAATTTCCAACCCAACCCATTTCCGGGAAACCGCGGCTTGTTTGTTTCCCAAGCAAAATTCTCCAATCCGTACATCCTTATATATAAATACACCACCACACACCATATATCTTCCACTCCAAAATCACTCAAATTATAAAACTTCTGATTACCTCTCCATTGGAAGGGTGAAAAAAaGGAGAAAaTTCCCGATGATTGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGGCGGGGgCGGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGCATCGGGTGGCAGTGATGGGAATGGAGAATGGTGGGCATCGGCGTCGTTCGTTGACCACCAAGTGATGGGCGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGCGGGGGTTGGGGGTGTGAGTCCGCTGGATGAATTGGCGTTTCTGCAGAATTTGGATGGGAATTATGCAGAAATGTTGAATGGGTTTTGGCATGATTCTTCGACGGCAGAAAGTGAGATGCCAGGTTTGAGTGCACTGCTGTAGTTTCGGAGTAGTTCATAGTTTCTCCCATTTTTTGATTTTTTGTTTTAACTAAAATGATTTGTATAGATAGAT ATGGTTCTATACCTTTTTCCAATTTTCTCTTTGCTTCGTTTTCATTGGGAATTTTTCCTTTCCCTTCAAATTTCCAACCCAACCCATTTCCGGGAAACCGCGGCTTGTTTGTTTCCCAAGCAAAATTCTCCAATCCGTACATCCTTATATATAAATACACCACCACACACCATATATCTTCCACTCCAAAATCACTCAAATTATAAAACTTCTGATTACCTCTCCATTGGAAGGGTGAAAAAAAGGAGAAAATTCCCGATGATTGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGGCGGGGGCGGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGCATCGGGTGGCAGTGATGGGAATGGAGAATGGTGGGCATCGGCGTCGTTCGTTGACCACCAAGTGATGGGCGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGCGGGGGTTGGGGGTGTGAGTCCGCTGGATGAATTGGCGTTTCTGCAGAATTTGGATGGGAATTATGCAGAAATGTTGAATGGGTTTTGGCATGATTCTTCGACGGCAGAAAGTGAGATGCCAGGTTTGAGTGCACTGCTGTAGTTTCGGAGTAGTTCATAGTTTCTCCCATTTTTTGATTTTTTGTTTTAACTAAAATGATTTGTATAGATAGAT ATGGTTCTATACCTTTTTCCAATTTTCTCTTTGCTTCGTTTTCATTGGGAATTTTTCCTTTCCCTTCAAATTTCCAACCCAACCCATTTCCGGGAAACCGCGGCTTGTTTGTTTCCCAAGCAAAATTCTCCAATCCGTACATCCTTATATATAAATACACCACCACACACCATATATCTTCCACTCCAAAATCACTCAAATTATAAAACTTCTGATTACCTCTCCATTGGAAGGGTGAAAAAAaGGAGAAAaTTCCCGATGATTGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGGCGGGGgCGGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGCATCGGGTGGCAGTGATGGGAATGGAGAATGGTGGGCATCGGCGTCGTTCGTTGACCACCAAGTGATGGGCGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGCGGGGGTTGGGGGTGTGAGTCCGCTGGATGAATTGGCGTTTCTGCAGAATTTGGATGGGAATTATGCAGAAATGTTGAATGGGTTTTGGCATGATTCTTCGACGGCAGAAAGTGAGATGCCAGGTTTGAGTGCACTGCTGTAG MVLYLFPIFSLLRFHWEFFLSLQISNPTHFRETAACLFPKQNSPIRTSLYINTPPHTIYLPLQNHSNYKTSDYLSIGRVKKRRKFPMIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL*
BLAST of Cucsa.307850 vs. Swiss-Prot
Match: SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE=1 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.5e-06 Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1
BLAST of Cucsa.307850 vs. TrEMBL
Match: A0A0A0KTR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623915 PE=4 SV=1) HSP 1 Score: 280.0 bits (715), Expect = 2.5e-72 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1
BLAST of Cucsa.307850 vs. TrEMBL
Match: D1MWZ4_CITLA (Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris GN=CitSIB PE=2 SV=1) HSP 1 Score: 177.2 bits (448), Expect = 2.3e-41 Identity = 95/146 (65.07%), Postives = 116/146 (79.45%), Query Frame = 1
BLAST of Cucsa.307850 vs. TrEMBL
Match: M5XE50_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013276mg PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11 Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1
BLAST of Cucsa.307850 vs. TrEMBL
Match: W9RNW5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023976 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 3.2e-11 Identity = 55/116 (47.41%), Postives = 70/116 (60.34%), Query Frame = 1
BLAST of Cucsa.307850 vs. TrEMBL
Match: A0A067L8W8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24548 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 3.2e-11 Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 1
BLAST of Cucsa.307850 vs. TAIR10
Match: AT3G56710.1 (AT3G56710.1 sigma factor binding protein 1) HSP 1 Score: 54.7 bits (130), Expect = 8.7e-08 Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1
BLAST of Cucsa.307850 vs. NCBI nr
Match: gi|449449264|ref|XP_004142385.1| (PREDICTED: uncharacterized protein LOC101217123 [Cucumis sativus]) HSP 1 Score: 280.0 bits (715), Expect = 3.6e-72 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1
BLAST of Cucsa.307850 vs. NCBI nr
Match: gi|659092245|ref|XP_008446972.1| (PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo]) HSP 1 Score: 234.2 bits (596), Expect = 2.3e-58 Identity = 117/140 (83.57%), Postives = 126/140 (90.00%), Query Frame = 1
BLAST of Cucsa.307850 vs. NCBI nr
Match: gi|270309002|dbj|BAI52954.1| (sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris]) HSP 1 Score: 177.2 bits (448), Expect = 3.3e-41 Identity = 95/146 (65.07%), Postives = 116/146 (79.45%), Query Frame = 1
BLAST of Cucsa.307850 vs. NCBI nr
Match: gi|470145903|ref|XP_004308571.1| (PREDICTED: sigma factor binding protein 1, chloroplastic-like [Fragaria vesca subsp. vesca]) HSP 1 Score: 80.1 bits (196), Expect = 5.5e-12 Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 1
BLAST of Cucsa.307850 vs. NCBI nr
Match: gi|645251336|ref|XP_008231630.1| (PREDICTED: uncharacterized protein LOC103330797 [Prunus mume]) HSP 1 Score: 79.7 bits (195), Expect = 7.2e-12 Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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