Cucsa.307850 (gene) Cucumber (Gy14) v1

NameCucsa.307850
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionSigma factor binding protein 1
Locationscaffold02978 : 126553 .. 127441 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATGAAAATGGAGGATATACCTTACATGTACATATGTGTGTAAGTTGATCTAACCATATATATATATATATTATTTTGTTCCATTTGGGTGTGGGGGATTAGGGGTCCTTTTAAGGACATCTGGAAAGAAAGAAGGTTCTATACCTTTTTCCAATTTTCTCTTTGCTTCGTTTTCATTGGGAATTTTTCCTTTCCCTTCAAATTTCCAACCCAACCCATTTCCGGGAAACCGCGGCTTGTTTGTTTCCCAAGCAAAATTCTCCAATCCGTACATCCTTATATATAAATACACCACCACACACCATATATCTTCCACTCCAAAATCACTCAAATTATAAAACTTCTGATTACCTCTCCATTGGAAGGGTGAAAAAAaGGAGAAAaTTCCCGATGATTGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGGCGGGGgCGGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGCATCGGGTGGCAGTGATGGGAATGGAGAATGGTGGGCATCGGCGTCGTTCGTTGACCACCAAGTGATGGGCGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGCGGGGGTTGGGGGTGTGAGTCCGCTGGATGAATTGGCGTTTCTGCAGAATTTGGATGGGAATTATGCAGAAATGTTGAATGGGTTTTGGCATGATTCTTCGACGGCAGAAAGTGAGATGCCAGGTTTGAGTGCACTGCTGTAGTTTCGGAGTAGTTCATAGTTTCTCCCATTTTTTGATTTTTTGTTTTAACTAAAATGATTTGTATAGATAGAT

mRNA sequence

ATGGTTCTATACCTTTTTCCAATTTTCTCTTTGCTTCGTTTTCATTGGGAATTTTTCCTTTCCCTTCAAATTTCCAACCCAACCCATTTCCGGGAAACCGCGGCTTGTTTGTTTCCCAAGCAAAATTCTCCAATCCGTACATCCTTATATATAAATACACCACCACACACCATATATCTTCCACTCCAAAATCACTCAAATTATAAAACTTCTGATTACCTCTCCATTGGAAGGGTGAAAAAAAGGAGAAAATTCCCGATGATTGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGGCGGGGGCGGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGCATCGGGTGGCAGTGATGGGAATGGAGAATGGTGGGCATCGGCGTCGTTCGTTGACCACCAAGTGATGGGCGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGCGGGGGTTGGGGGTGTGAGTCCGCTGGATGAATTGGCGTTTCTGCAGAATTTGGATGGGAATTATGCAGAAATGTTGAATGGGTTTTGGCATGATTCTTCGACGGCAGAAAGTGAGATGCCAGGTTTGAGTGCACTGCTGTAGTTTCGGAGTAGTTCATAGTTTCTCCCATTTTTTGATTTTTTGTTTTAACTAAAATGATTTGTATAGATAGAT

Coding sequence (CDS)

ATGGTTCTATACCTTTTTCCAATTTTCTCTTTGCTTCGTTTTCATTGGGAATTTTTCCTTTCCCTTCAAATTTCCAACCCAACCCATTTCCGGGAAACCGCGGCTTGTTTGTTTCCCAAGCAAAATTCTCCAATCCGTACATCCTTATATATAAATACACCACCACACACCATATATCTTCCACTCCAAAATCACTCAAATTATAAAACTTCTGATTACCTCTCCATTGGAAGGGTGAAAAAAaGGAGAAAaTTCCCGATGATTGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGGCGGGGgCGGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGCATCGGGTGGCAGTGATGGGAATGGAGAATGGTGGGCATCGGCGTCGTTCGTTGACCACCAAGTGATGGGCGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGCGGGGGTTGGGGGTGTGAGTCCGCTGGATGAATTGGCGTTTCTGCAGAATTTGGATGGGAATTATGCAGAAATGTTGAATGGGTTTTGGCATGATTCTTCGACGGCAGAAAGTGAGATGCCAGGTTTGAGTGCACTGCTGTAG

Protein sequence

MVLYLFPIFSLLRFHWEFFLSLQISNPTHFRETAACLFPKQNSPIRTSLYINTPPHTIYLPLQNHSNYKTSDYLSIGRVKKRRKFPMIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL*
BLAST of Cucsa.307850 vs. Swiss-Prot
Match: SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-06
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1

Query: 70  TSDYLSIGRVKKRRKFPMIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQ 129
           +S +L+   + K++  P+     KQ K++  S     KV YIS+PM+V+T ASKFR LVQ
Sbjct: 5   SSTFLTTTSLDKKKPSPVSRKSPKQKKKTT-STNKPIKVRYISNPMRVQTCASKFRELVQ 64

Query: 130 KLTGQDS 137
           +LTGQD+
Sbjct: 65  ELTGQDA 70

BLAST of Cucsa.307850 vs. TrEMBL
Match: A0A0A0KTR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623915 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.5e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1

Query: 87  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 146
           MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS
Sbjct: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 147 GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 206
           GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN
Sbjct: 61  GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 120

Query: 207 GFWHDSSTAESEMPGLSALL 227
           GFWHDSSTAESEMPGLSALL
Sbjct: 121 GFWHDSSTAESEMPGLSALL 140

BLAST of Cucsa.307850 vs. TrEMBL
Match: D1MWZ4_CITLA (Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris GN=CitSIB PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.3e-41
Identity = 95/146 (65.07%), Postives = 116/146 (79.45%), Query Frame = 1

Query: 87  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-A 146
           M VTGKKQAKRS+KSA A FKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFME+ A
Sbjct: 1   MNVTGKKQAKRSRKSAAADFKVVYISSPMKVKTSASKFRSLVQRLTGQDSDAERFMELTA 60

Query: 147 SGGSDGNGEWWASASFVDHQVMGEEDVMVGGKV-----EAGVGGVSPLDELAFLQNLDGN 206
           S  SD N +  ASA+F D+Q++G++D++V GKV     E+ V  + P D+LA L NLD +
Sbjct: 61  SAASDRNLQSSASATFFDYQLLGDDDLVVAGKVETAAYESSVAALPPPDDLAVLHNLDAS 120

Query: 207 YAEMLNGFWHDSSTAESEMPGLSALL 227
           +  M +GFW DS TA++EMPGL+ALL
Sbjct: 121 FGGMFHGFWFDSFTAQAEMPGLNALL 146

BLAST of Cucsa.307850 vs. TrEMBL
Match: M5XE50_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013276mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1

Query: 92  KKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFME 144
           K   K+SK+    G KVVYISSPMKVKTSASKFR+LVQ+LTG+DSDAERFME
Sbjct: 10  KSPPKQSKRRKSKGVKVVYISSPMKVKTSASKFRALVQELTGRDSDAERFME 61

BLAST of Cucsa.307850 vs. TrEMBL
Match: W9RNW5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023976 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.2e-11
Identity = 55/116 (47.41%), Postives = 70/116 (60.34%), Query Frame = 1

Query: 92  KKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDG 151
           +KQ KRS+++ G   KVVYISSPMKVKTSAS+FR+LVQ+LTG++SDAERFME      + 
Sbjct: 12  QKQFKRSRRNKGV--KVVYISSPMKVKTSASEFRALVQELTGRNSDAERFME------EI 71

Query: 152 NGEWWASASFVD---HQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEM 205
           NG    +A+  D   HQ+M     M  G VE   GG    D   F  N    Y+ +
Sbjct: 72  NGVGINTANLDDQDQHQMM-----MKSGSVE---GGSHESDHYNFNINSSSEYSSL 111

BLAST of Cucsa.307850 vs. TrEMBL
Match: A0A067L8W8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24548 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.2e-11
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 1

Query: 92  KKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDG 151
           K+QAKRSKK+     KVVYISSPMKV+TSASKFR+LVQ+LTG+DSDA RFM++  G  + 
Sbjct: 11  KRQAKRSKKA----IKVVYISSPMKVQTSASKFRALVQELTGKDSDAARFMDVNGGDQNL 67

Query: 152 N 153
           N
Sbjct: 71  N 67

BLAST of Cucsa.307850 vs. TAIR10
Match: AT3G56710.1 (AT3G56710.1 sigma factor binding protein 1)

HSP 1 Score: 54.7 bits (130), Expect = 8.7e-08
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1

Query: 70  TSDYLSIGRVKKRRKFPMIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQ 129
           +S +L+   + K++  P+     KQ K++  S     KV YIS+PM+V+T ASKFR LVQ
Sbjct: 5   SSTFLTTTSLDKKKPSPVSRKSPKQKKKTT-STNKPIKVRYISNPMRVQTCASKFRELVQ 64

Query: 130 KLTGQDS 137
           +LTGQD+
Sbjct: 65  ELTGQDA 70

BLAST of Cucsa.307850 vs. NCBI nr
Match: gi|449449264|ref|XP_004142385.1| (PREDICTED: uncharacterized protein LOC101217123 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 3.6e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1

Query: 87  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 146
           MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS
Sbjct: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 147 GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 206
           GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN
Sbjct: 61  GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 120

Query: 207 GFWHDSSTAESEMPGLSALL 227
           GFWHDSSTAESEMPGLSALL
Sbjct: 121 GFWHDSSTAESEMPGLSALL 140

BLAST of Cucsa.307850 vs. NCBI nr
Match: gi|659092245|ref|XP_008446972.1| (PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 2.3e-58
Identity = 117/140 (83.57%), Postives = 126/140 (90.00%), Query Frame = 1

Query: 87  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 146
           M VTGKKQAKRSKKS  A FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS
Sbjct: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 147 GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 206
           G SDGNG+ WASASF+D Q+MGEEDV+VGGK EA  GGV+P D+L FLQNLDGN+AEM N
Sbjct: 61  GASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFN 120

Query: 207 GFWHDSSTAESEMPGLSALL 227
           GFWHDSSTA++EM GLSALL
Sbjct: 121 GFWHDSSTAQTEMTGLSALL 140

BLAST of Cucsa.307850 vs. NCBI nr
Match: gi|270309002|dbj|BAI52954.1| (sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 177.2 bits (448), Expect = 3.3e-41
Identity = 95/146 (65.07%), Postives = 116/146 (79.45%), Query Frame = 1

Query: 87  MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-A 146
           M VTGKKQAKRS+KSA A FKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFME+ A
Sbjct: 1   MNVTGKKQAKRSRKSAAADFKVVYISSPMKVKTSASKFRSLVQRLTGQDSDAERFMELTA 60

Query: 147 SGGSDGNGEWWASASFVDHQVMGEEDVMVGGKV-----EAGVGGVSPLDELAFLQNLDGN 206
           S  SD N +  ASA+F D+Q++G++D++V GKV     E+ V  + P D+LA L NLD +
Sbjct: 61  SAASDRNLQSSASATFFDYQLLGDDDLVVAGKVETAAYESSVAALPPPDDLAVLHNLDAS 120

Query: 207 YAEMLNGFWHDSSTAESEMPGLSALL 227
           +  M +GFW DS TA++EMPGL+ALL
Sbjct: 121 FGGMFHGFWFDSFTAQAEMPGLNALL 146

BLAST of Cucsa.307850 vs. NCBI nr
Match: gi|470145903|ref|XP_004308571.1| (PREDICTED: sigma factor binding protein 1, chloroplastic-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 80.1 bits (196), Expect = 5.5e-12
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 1

Query: 93  KQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGN 152
           KQ+KRS+ S G   KVVYISSPMKV+TSASKFR+LVQ+LTG+DSDAERFME  + G DG+
Sbjct: 12  KQSKRSRSSKGV--KVVYISSPMKVQTSASKFRALVQELTGRDSDAERFME--TNGGDGH 71

Query: 153 GEWWASASFVDHQVMGEED 172
                   F   + + E D
Sbjct: 72  HRHHKVPEFSHEKQLKEAD 86

BLAST of Cucsa.307850 vs. NCBI nr
Match: gi|645251336|ref|XP_008231630.1| (PREDICTED: uncharacterized protein LOC103330797 [Prunus mume])

HSP 1 Score: 79.7 bits (195), Expect = 7.2e-12
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 1

Query: 92  KKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFME 144
           K   K+SK+S   G KVVYISSPMKVKTSASKFR+LVQ+LTG+DSDAERFME
Sbjct: 10  KSPPKQSKRSKSKGVKVVYISSPMKVKTSASKFRALVQELTGRDSDAERFME 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SIB1_ARATH1.5e-0644.78Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE... [more]
Match NameE-valueIdentityDescription
A0A0A0KTR9_CUCSA2.5e-72100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623915 PE=4 SV=1[more]
D1MWZ4_CITLA2.3e-4165.07Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris GN=CitSIB PE... [more]
M5XE50_PRUPE1.9e-1175.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013276mg PE=4 SV=1[more]
W9RNW5_9ROSA3.2e-1147.41Uncharacterized protein OS=Morus notabilis GN=L484_023976 PE=4 SV=1[more]
A0A067L8W8_JATCU3.2e-1167.21Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24548 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G56710.18.7e-0844.78 sigma factor binding protein 1[more]
Match NameE-valueIdentityDescription
gi|449449264|ref|XP_004142385.1|3.6e-72100.00PREDICTED: uncharacterized protein LOC101217123 [Cucumis sativus][more]
gi|659092245|ref|XP_008446972.1|2.3e-5883.57PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo][more]
gi|270309002|dbj|BAI52954.1|3.3e-4165.07sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris][more]
gi|470145903|ref|XP_004308571.1|5.5e-1258.23PREDICTED: sigma factor binding protein 1, chloroplastic-like [Fragaria vesca su... [more]
gi|645251336|ref|XP_008231630.1|7.2e-1276.92PREDICTED: uncharacterized protein LOC103330797 [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008889VQ
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.307850.1Cucsa.307850.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 111..137
score: 2.0
NoneNo IPR availablePANTHERPTHR33624FAMILY NOT NAMEDcoord: 96..153
score: 2.3