Carg02002 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGTAATCGGCAAAAAACCGCCGAAGAGAACCAAGAAATCGGCCGCCGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTAGATCTCTCGTCCAGAAACTCACCGGCCAGGACTCTGACGCCGAGAGTTTCATGGAACTCATCGCAGCTGATCGGAACTTTCAATCGTCCGCGTTCCTCGATTACCAAATCCTCGGCGATGACAATCTAATTGATCGCGACCATCGTCTTGTGGCGGGAAAGATCGAAACGGCGGCGTATCAGTCGTTGGTTGCTCCGCCGGAAGATGATTTTGTTCTGCAGAACTTTGATGCGAGTTTTGAAGAAATGCTCCATGGATTTTTTGCATGA ATGGATGTAATCGGCAAAAAACCGCCGAAGAGAACCAAGAAATCGGCCGCCGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTAGATCTCTCGTCCAGAAACTCACCGGCCAGGACTCTGACGCCGAGAGTTTCATGGAACTCATCGCAGCTGATCGGAACTTTCAATCGTCCGCGTTCCTCGATTACCAAATCCTCGGCGATGACAATCTAATTGATCGCGACCATCGTCTTGTGGCGGGAAAGATCGAAACGGCGGCGTATCAGTCGTTGGTTGCTCCGCCGGAAGATGATTTTGTTCTGCAGAACTTTGATGCGAGTTTTGAAGAAATGCTCCATGGATTTTTTGCATGA ATGGATGTAATCGGCAAAAAACCGCCGAAGAGAACCAAGAAATCGGCCGCCGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTAGATCTCTCGTCCAGAAACTCACCGGCCAGGACTCTGACGCCGAGAGTTTCATGGAACTCATCGCAGCTGATCGGAACTTTCAATCGTCCGCGTTCCTCGATTACCAAATCCTCGGCGATGACAATCTAATTGATCGCGACCATCGTCTTGTGGCGGGAAAGATCGAAACGGCGGCGTATCAGTCGTTGGTTGCTCCGCCGGAAGATGATTTTGTTCTGCAGAACTTTGATGCGAGTTTTGAAGAAATGCTCCATGGATTTTTTGCATGA MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGFFA
BLAST of Carg02002 vs. NCBI nr
Match: XP_022957180.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 246.1 bits (627), Expect = 6.2e-62 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
BLAST of Carg02002 vs. NCBI nr
Match: XP_023514832.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 244.6 bits (623), Expect = 1.8e-61 Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0
BLAST of Carg02002 vs. NCBI nr
Match: XP_022986090.1 (uncharacterized protein LOC111483942 [Cucurbita maxima]) HSP 1 Score: 228.4 bits (581), Expect = 1.3e-56 Identity = 118/126 (93.65%), Postives = 120/126 (95.24%), Query Frame = 0
BLAST of Carg02002 vs. NCBI nr
Match: XP_023542375.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 163.7 bits (413), Expect = 4.1e-37 Identity = 96/135 (71.11%), Postives = 104/135 (77.04%), Query Frame = 0
BLAST of Carg02002 vs. NCBI nr
Match: XP_022945563.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 162.5 bits (410), Expect = 9.1e-37 Identity = 95/135 (70.37%), Postives = 104/135 (77.04%), Query Frame = 0
BLAST of Carg02002 vs. TAIR10
Match: AT3G56710.1 (sigma factor binding protein 1) HSP 1 Score: 48.9 bits (115), Expect = 2.7e-06 Identity = 42/111 (37.84%), Postives = 56/111 (50.45%), Query Frame = 0
BLAST of Carg02002 vs. TAIR10
Match: AT2G41180.1 (VQ motif-containing protein) HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04 Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 0
BLAST of Carg02002 vs. Swiss-Prot
Match: sp|Q9LDH1|SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 4.8e-05 Identity = 42/111 (37.84%), Postives = 56/111 (50.45%), Query Frame = 0
BLAST of Carg02002 vs. TrEMBL
Match: tr|D1MWZ4|D1MWZ4_CITLA (Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=CitSIB PE=2 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 2.4e-33 Identity = 91/135 (67.41%), Postives = 103/135 (76.30%), Query Frame = 0
BLAST of Carg02002 vs. TrEMBL
Match: tr|A0A1S4DW56|A0A1S4DW56_CUCME (sigma factor binding protein 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103489524 PE=4 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 5.8e-24 Identity = 77/131 (58.78%), Postives = 95/131 (72.52%), Query Frame = 0
BLAST of Carg02002 vs. TrEMBL
Match: tr|A0A0A0KTR9|A0A0A0KTR9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623915 PE=4 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23 Identity = 72/131 (54.96%), Postives = 96/131 (73.28%), Query Frame = 0
BLAST of Carg02002 vs. TrEMBL
Match: tr|A0A067L8W8|A0A067L8W8_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24548 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12 Identity = 54/128 (42.19%), Postives = 73/128 (57.03%), Query Frame = 0
BLAST of Carg02002 vs. TrEMBL
Match: tr|M5XE50|M5XE50_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G041200 PE=4 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 4.8e-10 Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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