Carg02002 (gene) Silver-seed gourd

NameCarg02002
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionsigma factor binding protein 1, chloroplastic-like
LocationCucurbita_argyrosperma_scaffold_003 : 1642650 .. 1643030 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTAATCGGCAAAAAACCGCCGAAGAGAACCAAGAAATCGGCCGCCGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTAGATCTCTCGTCCAGAAACTCACCGGCCAGGACTCTGACGCCGAGAGTTTCATGGAACTCATCGCAGCTGATCGGAACTTTCAATCGTCCGCGTTCCTCGATTACCAAATCCTCGGCGATGACAATCTAATTGATCGCGACCATCGTCTTGTGGCGGGAAAGATCGAAACGGCGGCGTATCAGTCGTTGGTTGCTCCGCCGGAAGATGATTTTGTTCTGCAGAACTTTGATGCGAGTTTTGAAGAAATGCTCCATGGATTTTTTGCATGA

mRNA sequence

ATGGATGTAATCGGCAAAAAACCGCCGAAGAGAACCAAGAAATCGGCCGCCGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTAGATCTCTCGTCCAGAAACTCACCGGCCAGGACTCTGACGCCGAGAGTTTCATGGAACTCATCGCAGCTGATCGGAACTTTCAATCGTCCGCGTTCCTCGATTACCAAATCCTCGGCGATGACAATCTAATTGATCGCGACCATCGTCTTGTGGCGGGAAAGATCGAAACGGCGGCGTATCAGTCGTTGGTTGCTCCGCCGGAAGATGATTTTGTTCTGCAGAACTTTGATGCGAGTTTTGAAGAAATGCTCCATGGATTTTTTGCATGA

Coding sequence (CDS)

ATGGATGTAATCGGCAAAAAACCGCCGAAGAGAACCAAGAAATCGGCCGCCGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTAGATCTCTCGTCCAGAAACTCACCGGCCAGGACTCTGACGCCGAGAGTTTCATGGAACTCATCGCAGCTGATCGGAACTTTCAATCGTCCGCGTTCCTCGATTACCAAATCCTCGGCGATGACAATCTAATTGATCGCGACCATCGTCTTGTGGCGGGAAAGATCGAAACGGCGGCGTATCAGTCGTTGGTTGCTCCGCCGGAAGATGATTTTGTTCTGCAGAACTTTGATGCGAGTTTTGAAGAAATGCTCCATGGATTTTTTGCATGA

Protein sequence

MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGFFA
BLAST of Carg02002 vs. NCBI nr
Match: XP_022957180.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 246.1 bits (627), Expect = 6.2e-62
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query: 1   MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA 60
           MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA
Sbjct: 1   MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA 60

Query: 61  DRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEM 120
           DRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEM
Sbjct: 61  DRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEM 120

Query: 121 LHGFFA 127
           LHGFFA
Sbjct: 121 LHGFFA 126

BLAST of Carg02002 vs. NCBI nr
Match: XP_023514832.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.6 bits (623), Expect = 1.8e-61
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0

Query: 1   MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA 60
           MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIA 
Sbjct: 1   MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAG 60

Query: 61  DRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEM 120
           DRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEM
Sbjct: 61  DRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEM 120

Query: 121 LHGFFA 127
           LHGFFA
Sbjct: 121 LHGFFA 126

BLAST of Carg02002 vs. NCBI nr
Match: XP_022986090.1 (uncharacterized protein LOC111483942 [Cucurbita maxima])

HSP 1 Score: 228.4 bits (581), Expect = 1.3e-56
Identity = 118/126 (93.65%), Postives = 120/126 (95.24%), Query Frame = 0

Query: 1   MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA 60
           MDVIGKK PKRTKKSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESF+ELIA 
Sbjct: 1   MDVIGKKQPKRTKKSAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFLELIAG 60

Query: 61  DRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEM 120
           DRNFQSSAFLDYQILGDDNLI+RDHRLVAGKIETAAYQSLVAPP DD VLQNFDASFEEM
Sbjct: 61  DRNFQSSAFLDYQILGDDNLINRDHRLVAGKIETAAYQSLVAPPADDLVLQNFDASFEEM 120

Query: 121 LHGFFA 127
           L GFFA
Sbjct: 121 LRGFFA 126

BLAST of Carg02002 vs. NCBI nr
Match: XP_023542375.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 163.7 bits (413), Expect = 4.1e-37
Identity = 96/135 (71.11%), Postives = 104/135 (77.04%), Query Frame = 0

Query: 1   MDVIGKKPPKR--TKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELI 60
           MD+  KK  KR   K +AA FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAE FMELI
Sbjct: 1   MDLTAKKQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  AA----DRN-----FQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFV 120
           AA    DRN       +SAFLDYQ+LGDD+L D DHRLVAGKIETAAYQS VAPPE D V
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVAPPE-DLV 120

Query: 121 LQNFDASFEEMLHGF 125
           +QNFDASF EM   F
Sbjct: 121 MQNFDASFAEMFQSF 134

BLAST of Carg02002 vs. NCBI nr
Match: XP_022945563.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 162.5 bits (410), Expect = 9.1e-37
Identity = 95/135 (70.37%), Postives = 104/135 (77.04%), Query Frame = 0

Query: 1   MDVIGKKPPKR--TKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELI 60
           MD+  KK  KR   K +AA FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAE FMELI
Sbjct: 1   MDLTAKKQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  AA----DRN-----FQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFV 120
           AA    DRN       +SAFLDYQ+LGDD+L D DHRLVAGKIETAAYQS VAPPE D V
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVAPPE-DLV 120

Query: 121 LQNFDASFEEMLHGF 125
           ++NFDASF EM   F
Sbjct: 121 MENFDASFAEMFQSF 134

BLAST of Carg02002 vs. TAIR10
Match: AT3G56710.1 (sigma factor binding protein 1)

HSP 1 Score: 48.9 bits (115), Expect = 2.7e-06
Identity = 42/111 (37.84%), Postives = 56/111 (50.45%), Query Frame = 0

Query: 20  KVVYISSPMKVKTSASKFRSLVQKLTGQDS---DAESFMELIAADRNFQSSAFLDYQILG 79
           KV YIS+PM+V+T ASKFR LVQ+LTGQD+     E      + D N    A        
Sbjct: 41  KVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSSDDHNLSPPA-------- 100

Query: 80  DDNLIDRD-HRLVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGFFA 127
            +NL  R  H+   G+ ++  Y+ L A  ED F+     A F     GFF+
Sbjct: 101 -ENLAPRVLHQEPFGERDSDCYEPLNA--EDMFLPDQMSAGFS----GFFS 136

BLAST of Carg02002 vs. TAIR10
Match: AT2G41180.1 (VQ motif-containing protein)

HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 0

Query: 20 KVVYISSPMKVKTSASKFRSLVQKLTGQDS 50
          KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Sbjct: 38 KVRYISNPMRVETCPSKFRELVQELTGQDA 67

BLAST of Carg02002 vs. Swiss-Prot
Match: sp|Q9LDH1|SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.8e-05
Identity = 42/111 (37.84%), Postives = 56/111 (50.45%), Query Frame = 0

Query: 20  KVVYISSPMKVKTSASKFRSLVQKLTGQDS---DAESFMELIAADRNFQSSAFLDYQILG 79
           KV YIS+PM+V+T ASKFR LVQ+LTGQD+     E      + D N    A        
Sbjct: 41  KVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSSDDHNLSPPA-------- 100

Query: 80  DDNLIDRD-HRLVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEMLHGFFA 127
            +NL  R  H+   G+ ++  Y+ L A  ED F+     A F     GFF+
Sbjct: 101 -ENLAPRVLHQEPFGERDSDCYEPLNA--EDMFLPDQMSAGFS----GFFS 136

BLAST of Carg02002 vs. TrEMBL
Match: tr|D1MWZ4|D1MWZ4_CITLA (Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=CitSIB PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.4e-33
Identity = 91/135 (67.41%), Postives = 103/135 (76.30%), Query Frame = 0

Query: 1   MDVIGKKPPKRTKKSAAG-FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMEL-- 60
           M+V GKK  KR++KSAA  FKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAE FMEL  
Sbjct: 1   MNVTGKKQAKRSRKSAAADFKVVYISSPMKVKTSASKFRSLVQRLTGQDSDAERFMELTA 60

Query: 61  -IAADRNFQSSA---FLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVA---PPEDDFVL 120
             A+DRN QSSA   F DYQ+LGDD+L+      VAGK+ETAAY+S VA   PP+D  VL
Sbjct: 61  SAASDRNLQSSASATFFDYQLLGDDDLV------VAGKVETAAYESSVAALPPPDDLAVL 120

Query: 121 QNFDASFEEMLHGFF 126
            N DASF  M HGF+
Sbjct: 121 HNLDASFGGMFHGFW 129

BLAST of Carg02002 vs. TrEMBL
Match: tr|A0A1S4DW56|A0A1S4DW56_CUCME (sigma factor binding protein 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103489524 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.8e-24
Identity = 77/131 (58.78%), Postives = 95/131 (72.52%), Query Frame = 0

Query: 1   MDVIGKKPPKRTKKS-AAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELI- 60
           M+V GKK  KR+KKS AA FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE FME+  
Sbjct: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 61  -AADRNFQ---SSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFVLQNFD 120
            A+D N Q   S++FLD Q++G+++++      V GK E AA+   V P +D   LQN D
Sbjct: 61  GASDGNGQSWASASFLDQQLMGEEDVV------VGGK-EEAAFGG-VNPADDLVFLQNLD 120

Query: 121 ASFEEMLHGFF 126
            +F EM +GF+
Sbjct: 121 GNFAEMFNGFW 123

BLAST of Carg02002 vs. TrEMBL
Match: tr|A0A0A0KTR9|A0A0A0KTR9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623915 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 72/131 (54.96%), Postives = 96/131 (73.28%), Query Frame = 0

Query: 1   MDVIGKKPPKRTKKSA-AGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIA 60
           M V GKK  KR+KKSA AGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE FME+ +
Sbjct: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 61  --ADRN---FQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFVLQNFD 120
             +D N   + S++F+D+Q++G++++      +V GK+E       V+P ++   LQN D
Sbjct: 61  GGSDGNGEWWASASFVDHQVMGEEDV------MVGGKVEAGV--GGVSPLDELAFLQNLD 120

Query: 121 ASFEEMLHGFF 126
            ++ EML+GF+
Sbjct: 121 GNYAEMLNGFW 123

BLAST of Carg02002 vs. TrEMBL
Match: tr|A0A067L8W8|A0A067L8W8_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24548 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 54/128 (42.19%), Postives = 73/128 (57.03%), Query Frame = 0

Query: 1   MDVIG--KKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELI 60
           MDV+G   K  ++ K+S    KVVYISSPMKV+TSASKFR+LVQ+LTG+DSDA  FM++ 
Sbjct: 1   MDVLGVNMKNKRQAKRSKKAIKVVYISSPMKVQTSASKFRALVQELTGKDSDAARFMDVN 60

Query: 61  AADRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFVLQNFDASFE 120
             D+N  SS     +IL D   +D     V   +  +   S    P+ DFV ++ D    
Sbjct: 61  GGDQNLNSSP----EIL-DQTGVDGQGSFVP-SLMNSCNDSSSTSPDSDFVFESLDRYLP 120

Query: 121 EMLHGFFA 127
            M   F +
Sbjct: 121 PMEGSFMS 122

BLAST of Carg02002 vs. TrEMBL
Match: tr|M5XE50|M5XE50_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G041200 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.8e-10
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 0

Query: 6  KKPPKRTK-KSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAADRNF 65
          K PPK++K + + G KVVYISSPMKVKTSASKFR+LVQ+LTG+DSDAE FME   A    
Sbjct: 10 KSPPKQSKRRKSKGVKVVYISSPMKVKTSASKFRALVQELTGRDSDAERFMETKGAHYQN 69

Query: 66 QSSAFLDYQILGDDN 80
                + Q+ G D+
Sbjct: 70 VHELTHEQQLKGVDH 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022957180.16.2e-62100.00sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata][more]
XP_023514832.11.8e-6199.21sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022986090.11.3e-5693.65uncharacterized protein LOC111483942 [Cucurbita maxima][more]
XP_023542375.14.1e-3771.11sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022945563.19.1e-3770.37sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT3G56710.12.7e-0637.84sigma factor binding protein 1[more]
AT2G41180.11.9e-0470.00VQ motif-containing protein[more]
Match NameE-valueIdentityDescription
sp|Q9LDH1|SIB1_ARATH4.8e-0537.84Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Match NameE-valueIdentityDescription
tr|D1MWZ4|D1MWZ4_CITLA2.4e-3367.41Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN... [more]
tr|A0A1S4DW56|A0A1S4DW56_CUCME5.8e-2458.78sigma factor binding protein 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LO... [more]
tr|A0A0A0KTR9|A0A0A0KTR9_CUCSA1.3e-2354.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623915 PE=4 SV=1[more]
tr|A0A067L8W8|A0A067L8W8_JATCU3.0e-1242.19Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24548 PE=4 SV=1[more]
tr|M5XE50|M5XE50_PRUPE4.8e-1057.33Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G041200 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0051091positive regulation of sequence-specific DNA binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR039335SIB1/2
IPR008889VQ
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02002-RACarg02002-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 24..50
e-value: 3.3E-12
score: 45.6
NoneNo IPR availablePANTHERPTHR33624:SF2SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC-RELATEDcoord: 7..71
IPR039335Sigma factor binding protein 1/2PANTHERPTHR33624FAMILY NOT NAMEDcoord: 7..71