CmaCh18G008500 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G008500
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Sigma factor binding protein 1
Location	Cma_Chr18 : 7446781 .. 7447239 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTTACCGCCAAGCAGCAGTCGAAGCGCCGATCTAGGAAATCGGCAGCCGCCGATTTCAAAGTCGTGTACATTTCGAATCCGATGAAGGTGAAAACCAGCGCCTCCAGGTTCCGATCTCTCGTCCAGAAACTCACTGGCTTGGATTCCGACGCCGAGAGGTTCATGGAGTTGATTGCCGCCGCTGCCTCCAGTGATCGGAATAATCTTCAATCGTCGACATCGGCGTCGGCGTTCCTTGATTATCAACTCCTCGGCGATGACGATTTAACCGATTGTGATCATCGGCTTGTGGCGGGAAAGATCGAAACGGCGGCGTATCAGTCGTCGGTGGCTCCGCCGGAGGATTTGGTTATGCAGAACTTTGATGCGAGTTTTGCGGAAATGTTCCAAAGCTTCTTGCATGAATCTTCTTCAACGCAAACTGAGATGCCAGGTTTCAGTGCTCTACTGTAA

mRNA sequence

ATGGATCTTACCGCCAAGCAGCAGTCGAAGCGCCGATCTAGGAAATCGGCAGCCGCCGATTTCAAAGTCGTGTACATTTCGAATCCGATGAAGGTGAAAACCAGCGCCTCCAGGTTCCGATCTCTCGTCCAGAAACTCACTGGCTTGGATTCCGACGCCGAGAGGTTCATGGAGTTGATTGCCGCCGCTGCCTCCAGTGATCGGAATAATCTTCAATCGTCGACATCGGCGTCGGCGTTCCTTGATTATCAACTCCTCGGCGATGACGATTTAACCGATTGTGATCATCGGCTTGTGGCGGGAAAGATCGAAACGGCGGCGTATCAGTCGTCGGTGGCTCCGCCGGAGGATTTGGTTATGCAGAACTTTGATGCGAGTTTTGCGGAAATGTTCCAAAGCTTCTTGCATGAATCTTCTTCAACGCAAACTGAGATGCCAGGTTTCAGTGCTCTACTGTAA

Coding sequence (CDS)

ATGGATCTTACCGCCAAGCAGCAGTCGAAGCGCCGATCTAGGAAATCGGCAGCCGCCGATTTCAAAGTCGTGTACATTTCGAATCCGATGAAGGTGAAAACCAGCGCCTCCAGGTTCCGATCTCTCGTCCAGAAACTCACTGGCTTGGATTCCGACGCCGAGAGGTTCATGGAGTTGATTGCCGCCGCTGCCTCCAGTGATCGGAATAATCTTCAATCGTCGACATCGGCGTCGGCGTTCCTTGATTATCAACTCCTCGGCGATGACGATTTAACCGATTGTGATCATCGGCTTGTGGCGGGAAAGATCGAAACGGCGGCGTATCAGTCGTCGGTGGCTCCGCCGGAGGATTTGGTTATGCAGAACTTTGATGCGAGTTTTGCGGAAATGTTCCAAAGCTTCTTGCATGAATCTTCTTCAACGCAAACTGAGATGCCAGGTTTCAGTGCTCTACTGTAA

Protein sequence

MDLTAKQQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELIAAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVAPPEDLVMQNFDASFAEMFQSFLHESSSTQTEMPGFSALL

Homology

[Close]

BLAST of CmaCh18G008500 vs. TrEMBL
Match: D1MWZ4_CITLA (Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris GN=CitSIB PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.2e-40
Identity = 106/156 (67.95%), Postives = 123/156 (78.85%), Query Frame = 1


Query: 1   MDLTAKQQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60
           M++T K+Q+KR SRKSAAADFKVVYIS+PMKVKTSAS+FRSLVQ+LTG DSDAERFMEL 
Sbjct: 1   MNVTGKKQAKR-SRKSAAADFKVVYISSPMKVKTSASKFRSLVQRLTGQDSDAERFMELT 60

Query: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVA---PPED 120
           A+AAS    NLQSS SA+ F DYQLLGDDDL      +VAGK+ETAAY+SSVA   PP+D
Sbjct: 61  ASAASD--RNLQSSASAT-FFDYQLLGDDDL------VVAGKVETAAYESSVAALPPPDD 120

Query: 121 L-VMQNFDASFAEMFQSFLHESSSTQTEMPGFSALL 153
           L V+ N DASF  MF  F  +S + Q EMPG +ALL
Sbjct: 121 LAVLHNLDASFGGMFHGFWFDSFTAQAEMPGLNALL 146

[Close]

BLAST of CmaCh18G008500 vs. TrEMBL
Match: A0A0A0KTR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623915 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.3e-28
Identity = 80/153 (52.29%), Postives = 111/153 (72.55%), Query Frame = 1


Query: 1   MDLTAKQQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60
           M +T K+Q+KR S+KSA A FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFME+ 
Sbjct: 1   MIVTGKKQAKR-SKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM- 60

Query: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVAPPEDLV- 120
            A+  SD N      ++++F+D+Q++G++D+      +V GK+E       V+P ++L  
Sbjct: 61  -ASGGSDGNG--EWWASASFVDHQVMGEEDV------MVGGKVEAGV--GGVSPLDELAF 120

Query: 121 MQNFDASFAEMFQSFLHESSSTQTEMPGFSALL 153
           +QN D ++AEM   F H+SS+ ++EMPG SALL
Sbjct: 121 LQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL 140

[Close]

BLAST of CmaCh18G008500 vs. TrEMBL
Match: A0A067L8W8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24548 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-10
Identity = 57/153 (37.25%), Postives = 77/153 (50.33%), Query Frame = 1


Query: 1   MDLTAKQQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60
           MD+       +R  K +    KVVYIS+PMKV+TSAS+FR+LVQ+LTG DSDA RFM++ 
Sbjct: 1   MDVLGVNMKNKRQAKRSKKAIKVVYISSPMKVQTSASKFRALVQELTGKDSDAARFMDV- 60

Query: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVAPPEDLVM 120
               +    NL SS           + D    D     V   + +    SS +P  D V 
Sbjct: 61  ----NGGDQNLNSSPE---------ILDQTGVDGQGSFVPSLMNSCNDSSSTSPDSDFVF 120

Query: 121 QNFD-------ASFAEMFQSFL-HESSSTQTEM 146
           ++ D        SF  MFQS L HE SS + ++
Sbjct: 121 ESLDRYLPPMEGSFMSMFQSNLFHEYSSHELDV 139

[Close]

BLAST of CmaCh18G008500 vs. TrEMBL
Match: M1A3C7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400005401 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.5e-09
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 1


Query: 1  MDLTAKQQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFME 59
          M +  K+Q ++   +S   D KVVYIS PMKVKTSASRFRSLVQ+LTG DSD ER ME
Sbjct: 1  MIMNNKKQKRKNDHRSKKPDVKVVYISTPMKVKTSASRFRSLVQELTGRDSDIERIME 58

[Close]

BLAST of CmaCh18G008500 vs. TrEMBL
Match: B9RG77_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1451990 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.9e-09
Identity = 55/149 (36.91%), Postives = 77/149 (51.68%), Query Frame = 1


Query: 1   MDLTAKQQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMEL- 60
           +++ +++Q+ +RS+K      KVVYIS+PMKV+TSAS+FR+LVQ+LTG DSDA RFM++ 
Sbjct: 6   VNMKSRKQASKRSKKG----IKVVYISSPMKVETSASKFRALVQELTGKDSDAARFMDVN 65

Query: 61  -----IAAAASSDRNNLQSSTSASAFL----DYQLLGDDDLTDCDHRLVAGKIETAAYQS 120
                 +   + DR+   S    S  L     Y         D D              S
Sbjct: 66  NGAENYSTETTPDRSRAASDEHGSVLLPLMSSYNEPSFSSSPDSD--------------S 125

Query: 121 SVAPPEDLVMQNFDASFAEMFQS-FLHES 139
           S+  P D  +   + SF  MFQS F HES
Sbjct: 126 SIFDPFDRFLPPMEGSFMSMFQSNFPHES 136

[Close]

BLAST of CmaCh18G008500 vs. NCBI nr
Match: gi|270309002|dbj|BAI52954.1| (sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 173.3 bits (438), Expect = 3.2e-40
Identity = 106/156 (67.95%), Postives = 123/156 (78.85%), Query Frame = 1


Query: 1   MDLTAKQQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60
           M++T K+Q+KR SRKSAAADFKVVYIS+PMKVKTSAS+FRSLVQ+LTG DSDAERFMEL 
Sbjct: 1   MNVTGKKQAKR-SRKSAAADFKVVYISSPMKVKTSASKFRSLVQRLTGQDSDAERFMELT 60

Query: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVA---PPED 120
           A+AAS    NLQSS SA+ F DYQLLGDDDL      +VAGK+ETAAY+SSVA   PP+D
Sbjct: 61  ASAASD--RNLQSSASAT-FFDYQLLGDDDL------VVAGKVETAAYESSVAALPPPDD 120

Query: 121 L-VMQNFDASFAEMFQSFLHESSSTQTEMPGFSALL 153
           L V+ N DASF  MF  F  +S + Q EMPG +ALL
Sbjct: 121 LAVLHNLDASFGGMFHGFWFDSFTAQAEMPGLNALL 146

[Close]

BLAST of CmaCh18G008500 vs. NCBI nr
Match: gi|659092245|ref|XP_008446972.1| (PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 7.1e-32
Identity = 94/153 (61.44%), Postives = 114/153 (74.51%), Query Frame = 1


Query: 1   MDLTAKQQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60
           M++T K+Q+KR S+KS AADFKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFME+ 
Sbjct: 1   MNVTGKKQAKR-SKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM- 60

Query: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVAPPEDLV- 120
            A+ +SD N  QS  SAS FLD QL+G++D       +V G  E AA+   V P +DLV 
Sbjct: 61  -ASGASDGNG-QSWASAS-FLDQQLMGEED-------VVVGGKEEAAF-GGVNPADDLVF 120

Query: 121 MQNFDASFAEMFQSFLHESSSTQTEMPGFSALL 153
           +QN D +FAEMF  F H+SS+ QTEM G SALL
Sbjct: 121 LQNLDGNFAEMFNGFWHDSSTAQTEMTGLSALL 140

[Close]

BLAST of CmaCh18G008500 vs. NCBI nr
Match: gi|449449264|ref|XP_004142385.1| (PREDICTED: uncharacterized protein LOC101217123 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 4.8e-28
Identity = 80/153 (52.29%), Postives = 111/153 (72.55%), Query Frame = 1


Query: 1   MDLTAKQQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60
           M +T K+Q+KR S+KSA A FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFME+ 
Sbjct: 1   MIVTGKKQAKR-SKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM- 60

Query: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVAPPEDLV- 120
            A+  SD N      ++++F+D+Q++G++D+      +V GK+E       V+P ++L  
Sbjct: 61  -ASGGSDGNG--EWWASASFVDHQVMGEEDV------MVGGKVEAGV--GGVSPLDELAF 120

Query: 121 MQNFDASFAEMFQSFLHESSSTQTEMPGFSALL 153
           +QN D ++AEM   F H+SS+ ++EMPG SALL
Sbjct: 121 LQNLDGNYAEMLNGFWHDSSTAESEMPGLSALL 140

[Close]

BLAST of CmaCh18G008500 vs. NCBI nr
Match: gi|802574171|ref|XP_012068696.1| (PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas])

HSP 1 Score: 73.9 bits (180), Expect = 2.6e-10
Identity = 57/153 (37.25%), Postives = 77/153 (50.33%), Query Frame = 1


Query: 1   MDLTAKQQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60
           MD+       +R  K +    KVVYIS+PMKV+TSAS+FR+LVQ+LTG DSDA RFM++ 
Sbjct: 1   MDVLGVNMKNKRQAKRSKKAIKVVYISSPMKVQTSASKFRALVQELTGKDSDAARFMDV- 60

Query: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVAPPEDLVM 120
               +    NL SS           + D    D     V   + +    SS +P  D V 
Sbjct: 61  ----NGGDQNLNSSPE---------ILDQTGVDGQGSFVPSLMNSCNDSSSTSPDSDFVF 120

Query: 121 QNFD-------ASFAEMFQSFL-HESSSTQTEM 146
           ++ D        SF  MFQS L HE SS + ++
Sbjct: 121 ESLDRYLPPMEGSFMSMFQSNLFHEYSSHELDV 139

[Close]

BLAST of CmaCh18G008500 vs. NCBI nr
Match: gi|969999712|ref|XP_015084304.1| (PREDICTED: sigma factor binding protein 1, chloroplastic-like [Solanum pennellii])

HSP 1 Score: 69.7 bits (169), Expect = 5.0e-09
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 1


Query: 1  MDLTAKQQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFME 59
          M +  K+Q ++   KS  A+FKVVYIS PMKVKTSASRFRSLVQ+LTG DSD  R ME
Sbjct: 1  MIMNNKKQKRKDGYKSKKANFKVVYISTPMKVKTSASRFRSLVQELTGQDSDIARIME 58

The following BLAST results are available for this feature:

BLAST of CmaCh18G008500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh18G008500 vs. TrEMBL


Match Name	E-value	Identity	Description
D1MWZ4_CITLA	2.2e-40	67.95	Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris GN=CitSIB PE...	[more]
A0A0A0KTR9_CUCSA	3.3e-28	52.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623915 PE=4 SV=1	[more]
A0A067L8W8_JATCU	1.8e-10	37.25	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24548 PE=4 SV=1	[more]
M1A3C7_SOLTU	3.5e-09	63.79	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400005401 PE=4 SV=1	[more]
B9RG77_RICCO	5.9e-09	36.91	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1451990 PE=4 SV=1	[more]

BLAST of CmaCh18G008500 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh18G008500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|270309002\|dbj\|BAI52954.1\|	3.2e-40	67.95	sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris]	[more]
gi\|659092245\|ref\|XP_008446972.1\|	7.1e-32	61.44	PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo]	[more]
gi\|449449264\|ref\|XP_004142385.1\|	4.8e-28	52.29	PREDICTED: uncharacterized protein LOC101217123 [Cucumis sativus]	[more]
gi\|802574171\|ref\|XP_012068696.1\|	2.6e-10	37.25	PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]	[more]
gi\|969999712\|ref\|XP_015084304.1\|	5.0e-09	65.52	PREDICTED: sigma factor binding protein 1, chloroplastic-like [Solanum pennellii...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0051091	positive regulation of sequence-specific DNA binding transcription factor activity
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G008500.1	CmaCh18G008500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 26..52 score: 1.3
None	No IPR available	PANTHER	PTHR33624	FAMILY NOT NAMED	coord: 5..70 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G008500	Cucsa.307850	Cucumber (Gy14) v1	cgycmaB0849
CmaCh18G008500	Cla009928	Watermelon (97103) v1	cmawmB376
CmaCh18G008500	MELO3C012484	Melon (DHL92) v3.5.1	cmameB351
CmaCh18G008500	ClCG05G026910	Watermelon (Charleston Gray)	cmawcgB367
CmaCh18G008500	CmoCh04G013940	Cucurbita moschata (Rifu)	cmacmoB420
CmaCh18G008500	Lsi04G000180	Bottle gourd (USVL1VR-Ls)	cmalsiB379
CmaCh18G008500	MELO3C012484.2	Melon (DHL92) v3.6.1	cmamedB408
CmaCh18G008500	CsaV3_5G036860	Cucumber (Chinese Long) v3	cmacucB0498
CmaCh18G008500	Cla97C05G109160	Watermelon (97103) v2	cmawmbB427
CmaCh18G008500	Bhi07G001017	Wax gourd	cmawgoB0540
CmaCh18G008500	CsGy5G027140	Cucumber (Gy14) v2	cgybcmaB626
CmaCh18G008500	Carg02002	Silver-seed gourd	carcmaB1167
CmaCh18G008500	Carg14413	Silver-seed gourd	carcmaB1012

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh18G008500	CmaCh04G013220	Cucurbita maxima (Rimu)	cmacmaB402

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G008500	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G008500	Cucurbita pepo (Zucchini)	cmacpeB429
CmaCh18G008500	Cucumber (Gy14) v2	cgybcmaB627
CmaCh18G008500	Melon (DHL92) v3.6.1	cmamedB409
CmaCh18G008500	Cucurbita moschata (Rifu)	cmacmoB406
CmaCh18G008500	Wild cucumber (PI 183967)	cmacpiB423
CmaCh18G008500	Cucumber (Chinese Long) v2	cmacuB417