CsaV3_5G036860 (gene) Cucumber (Chinese Long) v3

NameCsaV3_5G036860
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionsigma factor binding protein 1, chloroplastic-like
Locationchr5 : 29006595 .. 29007429 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGGCGGGGGCGGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGCATCGGGTGGCAGTGATGGGAATGGAGAATGGTGGGCATCGGCGTCGTTCGTTGACCACCAAGTGATGGGCGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGCGGGGGTTGGGGGTGTGAGTCCGCTGGATGAATTGGCGTTTCTGCAGAATTTGGATGGGAATTATGCAGAAATGTTGAATGGGTTTTGGCATGATTCTTCGACGGCAGAAAGTGAGATGCCAGGTTTGAGTGCACTGCTGTAGTTTCGGAGTAGTTCATAGTTTCTCCCATTTTTTGATTTTTTGTTTTAACTAAAATGATTTGTATAGATAGATGAAACCTTTCCCAGCCCTTTTTCTTTGTCCACATATAGTTCATATTGTTTTGAATATAATATATACGATCATTTTGAGAATTTATATCAATGTTCTTATGTGTGTGTTTGTTATCCACTGCACTCAGTTTATTATCAAAGGATGGTCACATGATCTCTAACCTGATCCTACTCTGTAGTTTATAATTATGTACGTCTCTTTTTAAATTTGTGAAAAAACTCAACTAAAATTTGGATTGTTAAAATCTGATACACATCTTGCTATCAAAAGTTAATTAAATTTCATATATCTCCTATCAGACCCTGAAAATCTTCTAATCTTGTTTTTGGTAGATTCCTGA

mRNA sequence

ATGATTGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGGCGGGGGCGGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGCATCGGGTGGCAGTGATGGGAATGGAGAATGGTGGGCATCGGCGTCGTTCGTTGACCACCAAGTGATGGGCGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGCGGGGGTTGGGGGTGTGAGTCCGCTGGATGAATTGGCGTTTCTGCAGAATTTGGATGGGAATTATGCAGAAATGTTGAATGGGTTTTGGCATGATTCTTCGACGGCAGAAAGTGAGATGCCAGATTCCTGA

Coding sequence (CDS)

ATGATTGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGGCGGGGGCGGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGCATCGGGTGGCAGTGATGGGAATGGAGAATGGTGGGCATCGGCGTCGTTCGTTGACCACCAAGTGATGGGCGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGCGGGGGTTGGGGGTGTGAGTCCGCTGGATGAATTGGCGTTTCTGCAGAATTTGGATGGGAATTATGCAGAAATGTTGAATGGGTTTTGGCATGATTCTTCGACGGCAGAAAGTGAGATGCCAGATTCCTGA

Protein sequence

MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPDS
BLAST of CsaV3_5G036860 vs. NCBI nr
Match: XP_004142385.1 (PREDICTED: uncharacterized protein LOC101217123 [Cucumis sativus] >KGN52329.1 hypothetical protein Csa_5G623915 [Cucumis sativus])

HSP 1 Score: 265.4 bits (677), Expect = 1.1e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0

Query: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60
           MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS
Sbjct: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 61  GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 120
           GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN
Sbjct: 61  GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 120

Query: 121 GFWHDSSTAESEMP 135
           GFWHDSSTAESEMP
Sbjct: 121 GFWHDSSTAESEMP 134

BLAST of CsaV3_5G036860 vs. NCBI nr
Match: XP_016900221.1 (PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 219.5 bits (558), Expect = 6.8e-54
Identity = 111/133 (83.46%), Postives = 120/133 (90.23%), Query Frame = 0

Query: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60
           M VTGKKQAKRSKKS  A FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS
Sbjct: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 61  GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 120
           G SDGNG+ WASASF+D Q+MGEEDV+VGGK EA  GGV+P D+L FLQNLDGN+AEM N
Sbjct: 61  GASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFN 120

Query: 121 GFWHDSSTAESEM 134
           GFWHDSSTA++EM
Sbjct: 121 GFWHDSSTAQTEM 133

BLAST of CsaV3_5G036860 vs. NCBI nr
Match: BAI52954.1 (sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 163.7 bits (413), Expect = 4.4e-37
Identity = 90/140 (64.29%), Postives = 110/140 (78.57%), Query Frame = 0

Query: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-A 60
           M VTGKKQAKRS+KSA A FKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFME+ A
Sbjct: 1   MNVTGKKQAKRSRKSAAADFKVVYISSPMKVKTSASKFRSLVQRLTGQDSDAERFMELTA 60

Query: 61  SGGSDGNGEWWASASFVDHQVMGEEDVMVGGKV-----EAGVGGVSPLDELAFLQNLDGN 120
           S  SD N +  ASA+F D+Q++G++D++V GKV     E+ V  + P D+LA L NLD +
Sbjct: 61  SAASDRNLQSSASATFFDYQLLGDDDLVVAGKVETAAYESSVAALPPPDDLAVLHNLDAS 120

Query: 121 YAEMLNGFWHDSSTAESEMP 135
           +  M +GFW DS TA++EMP
Sbjct: 121 FGGMFHGFWFDSFTAQAEMP 140

BLAST of CsaV3_5G036860 vs. NCBI nr
Match: XP_022945563.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 127.5 bits (319), Expect = 3.5e-26
Identity = 76/147 (51.70%), Postives = 106/147 (72.11%), Query Frame = 0

Query: 1   MIVTGKKQAK-RSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM- 60
           M +T KKQ+K RS+KSA A FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFME+ 
Sbjct: 1   MDLTAKKQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  -ASGGSDGNG--EWWASASFVDHQVMGEEDV------MVGGKVEAGV--GGVSPLDELAF 120
            A+  SD N      ++++F+D+Q++G++D+      +V GK+E       V+P ++L  
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVAPPEDLV- 120

Query: 121 LQNLDGNYAEMLNGFWHDSSTAESEMP 135
           ++N D ++AEM   F HDSS+ ++EMP
Sbjct: 121 MENFDASFAEMFQSFLHDSSSTQTEMP 146

BLAST of CsaV3_5G036860 vs. NCBI nr
Match: XP_023542375.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.1 bits (318), Expect = 4.6e-26
Identity = 76/147 (51.70%), Postives = 106/147 (72.11%), Query Frame = 0

Query: 1   MIVTGKKQAK-RSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM- 60
           M +T KKQ+K RS+KSA A FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFME+ 
Sbjct: 1   MDLTAKKQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  -ASGGSDGNG--EWWASASFVDHQVMGEEDV------MVGGKVEAGV--GGVSPLDELAF 120
            A+  SD N      ++++F+D+Q++G++D+      +V GK+E       V+P ++L  
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVAPPEDLV- 120

Query: 121 LQNLDGNYAEMLNGFWHDSSTAESEMP 135
           +QN D ++AEM   F H+SS+ ++EMP
Sbjct: 121 MQNFDASFAEMFQSFLHESSSTQTEMP 146

BLAST of CsaV3_5G036860 vs. TAIR10
Match: AT3G56710.1 (sigma factor binding protein 1)

HSP 1 Score: 45.1 bits (105), Expect = 4.2e-05
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 0

Query: 15 SAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDS 51
          S     KV YIS+PM+V+T ASKFR LVQ+LTGQD+
Sbjct: 35 STNKPIKVRYISNPMRVQTCASKFRELVQELTGQDA 70

BLAST of CsaV3_5G036860 vs. TAIR10
Match: AT2G41180.1 (VQ motif-containing protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.6e-04
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 0

Query: 21 KVVYISSPMKVKTSASKFRSLVQKLTGQDS 51
          KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Sbjct: 38 KVRYISNPMRVETCPSKFRELVQELTGQDA 67

BLAST of CsaV3_5G036860 vs. Swiss-Prot
Match: sp|Q9LDH1|SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 7.5e-04
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 0

Query: 15 SAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDS 51
          S     KV YIS+PM+V+T ASKFR LVQ+LTGQD+
Sbjct: 35 STNKPIKVRYISNPMRVQTCASKFRELVQELTGQDA 70

BLAST of CsaV3_5G036860 vs. TrEMBL
Match: tr|A0A0A0KTR9|A0A0A0KTR9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623915 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 7.2e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0

Query: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60
           MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS
Sbjct: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 61  GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 120
           GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN
Sbjct: 61  GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 120

Query: 121 GFWHDSSTAESEMP 135
           GFWHDSSTAESEMP
Sbjct: 121 GFWHDSSTAESEMP 134

BLAST of CsaV3_5G036860 vs. TrEMBL
Match: tr|A0A1S4DW56|A0A1S4DW56_CUCME (sigma factor binding protein 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103489524 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.5e-54
Identity = 111/133 (83.46%), Postives = 120/133 (90.23%), Query Frame = 0

Query: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60
           M VTGKKQAKRSKKS  A FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS
Sbjct: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 61  GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 120
           G SDGNG+ WASASF+D Q+MGEEDV+VGGK EA  GGV+P D+L FLQNLDGN+AEM N
Sbjct: 61  GASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFN 120

Query: 121 GFWHDSSTAESEM 134
           GFWHDSSTA++EM
Sbjct: 121 GFWHDSSTAQTEM 133

BLAST of CsaV3_5G036860 vs. TrEMBL
Match: tr|D1MWZ4|D1MWZ4_CITLA (Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=CitSIB PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.9e-37
Identity = 90/140 (64.29%), Postives = 110/140 (78.57%), Query Frame = 0

Query: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-A 60
           M VTGKKQAKRS+KSA A FKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFME+ A
Sbjct: 1   MNVTGKKQAKRSRKSAAADFKVVYISSPMKVKTSASKFRSLVQRLTGQDSDAERFMELTA 60

Query: 61  SGGSDGNGEWWASASFVDHQVMGEEDVMVGGKV-----EAGVGGVSPLDELAFLQNLDGN 120
           S  SD N +  ASA+F D+Q++G++D++V GKV     E+ V  + P D+LA L NLD +
Sbjct: 61  SAASDRNLQSSASATFFDYQLLGDDDLVVAGKVETAAYESSVAALPPPDDLAVLHNLDAS 120

Query: 121 YAEMLNGFWHDSSTAESEMP 135
           +  M +GFW DS TA++EMP
Sbjct: 121 FGGMFHGFWFDSFTAQAEMP 140

BLAST of CsaV3_5G036860 vs. TrEMBL
Match: tr|A0A2N9HZY4|A0A2N9HZY4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45186 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 3  VTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGG 62
          V GK+QAK SKK    G KVVYI+SPMKVKTSASKFR LVQ+LTGQDSD  R+ME  + G
Sbjct: 10 VKGKRQAKGSKK----GVKVVYIASPMKVKTSASKFRDLVQELTGQDSDTARYMEEVNNG 69

Query: 63 SDGNGEWWASASFVDHQV 81
          +D  G +    +F D Q+
Sbjct: 70 ADHQGPF----NFSDQQL 79

BLAST of CsaV3_5G036860 vs. TrEMBL
Match: tr|A0A2P4I7E9|A0A2P4I7E9_QUESU (Sigma factor binding protein 2, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_67167 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.0e-11
Identity = 46/75 (61.33%), Postives = 52/75 (69.33%), Query Frame = 0

Query: 6  KKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDG 65
          K+QAKRSKK    G KVVYI+SPMKVKTSASKFR LVQ+LTGQDSD  R+ME   G   G
Sbjct: 12 KRQAKRSKK----GIKVVYIASPMKVKTSASKFRDLVQELTGQDSDTARYMEFNGGDHQG 71

Query: 66 NGEWWASASFVDHQV 81
                S +F D Q+
Sbjct: 72 ------SFTFSDQQL 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004142385.11.1e-67100.00PREDICTED: uncharacterized protein LOC101217123 [Cucumis sativus] >KGN52329.1 hy... [more]
XP_016900221.16.8e-5483.46PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo][more]
BAI52954.14.4e-3764.29sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris][more]
XP_022945563.13.5e-2651.70sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata][more]
XP_023542375.14.6e-2651.70sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT3G56710.14.2e-0563.89sigma factor binding protein 1[more]
AT2G41180.11.6e-0470.00VQ motif-containing protein[more]
Match NameE-valueIdentityDescription
sp|Q9LDH1|SIB1_ARATH7.5e-0463.89Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0KTR9|A0A0A0KTR9_CUCSA7.2e-68100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623915 PE=4 SV=1[more]
tr|A0A1S4DW56|A0A1S4DW56_CUCME4.5e-5483.46sigma factor binding protein 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LO... [more]
tr|D1MWZ4|D1MWZ4_CITLA2.9e-3764.29Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN... [more]
tr|A0A2N9HZY4|A0A2N9HZY4_FAGSY1.2e-1160.26Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45186 PE=4 SV=1[more]
tr|A0A2P4I7E9|A0A2P4I7E9_QUESU8.0e-1161.33Sigma factor binding protein 2, chloroplastic OS=Quercus suber OX=58331 GN=CFP56... [more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0051091positive regulation of sequence-specific DNA binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR039335SIB1/2
IPR008889VQ
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G036860.1CsaV3_5G036860.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 25..51
e-value: 3.6E-12
score: 45.4
IPR039335Sigma factor binding protein 1/2PANTHERPTHR33624FAMILY NOT NAMEDcoord: 5..64
NoneNo IPR availablePANTHERPTHR33624:SF2SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC-RELATEDcoord: 5..64