CsaV3_5G036860 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGGCGGGGGCGGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGCATCGGGTGGCAGTGATGGGAATGGAGAATGGTGGGCATCGGCGTCGTTCGTTGACCACCAAGTGATGGGCGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGCGGGGGTTGGGGGTGTGAGTCCGCTGGATGAATTGGCGTTTCTGCAGAATTTGGATGGGAATTATGCAGAAATGTTGAATGGGTTTTGGCATGATTCTTCGACGGCAGAAAGTGAGATGCCAGGTTTGAGTGCACTGCTGTAGTTTCGGAGTAGTTCATAGTTTCTCCCATTTTTTGATTTTTTGTTTTAACTAAAATGATTTGTATAGATAGATGAAACCTTTCCCAGCCCTTTTTCTTTGTCCACATATAGTTCATATTGTTTTGAATATAATATATACGATCATTTTGAGAATTTATATCAATGTTCTTATGTGTGTGTTTGTTATCCACTGCACTCAGTTTATTATCAAAGGATGGTCACATGATCTCTAACCTGATCCTACTCTGTAGTTTATAATTATGTACGTCTCTTTTTAAATTTGTGAAAAAACTCAACTAAAATTTGGATTGTTAAAATCTGATACACATCTTGCTATCAAAAGTTAATTAAATTTCATATATCTCCTATCAGACCCTGAAAATCTTCTAATCTTGTTTTTGGTAGATTCCTGA ATGATTGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGGCGGGGGCGGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGCATCGGGTGGCAGTGATGGGAATGGAGAATGGTGGGCATCGGCGTCGTTCGTTGACCACCAAGTGATGGGCGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGCGGGGGTTGGGGGTGTGAGTCCGCTGGATGAATTGGCGTTTCTGCAGAATTTGGATGGGAATTATGCAGAAATGTTGAATGGGTTTTGGCATGATTCTTCGACGGCAGAAAGTGAGATGCCAGATTCCTGA ATGATTGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGGCGGGGGCGGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGCATCGGGTGGCAGTGATGGGAATGGAGAATGGTGGGCATCGGCGTCGTTCGTTGACCACCAAGTGATGGGCGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGCGGGGGTTGGGGGTGTGAGTCCGCTGGATGAATTGGCGTTTCTGCAGAATTTGGATGGGAATTATGCAGAAATGTTGAATGGGTTTTGGCATGATTCTTCGACGGCAGAAAGTGAGATGCCAGATTCCTGA MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPDS
BLAST of CsaV3_5G036860 vs. NCBI nr
Match: XP_004142385.1 (PREDICTED: uncharacterized protein LOC101217123 [Cucumis sativus] >KGN52329.1 hypothetical protein Csa_5G623915 [Cucumis sativus]) HSP 1 Score: 265.4 bits (677), Expect = 1.1e-67 Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
BLAST of CsaV3_5G036860 vs. NCBI nr
Match: XP_016900221.1 (PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo]) HSP 1 Score: 219.5 bits (558), Expect = 6.8e-54 Identity = 111/133 (83.46%), Postives = 120/133 (90.23%), Query Frame = 0
BLAST of CsaV3_5G036860 vs. NCBI nr
Match: BAI52954.1 (sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris]) HSP 1 Score: 163.7 bits (413), Expect = 4.4e-37 Identity = 90/140 (64.29%), Postives = 110/140 (78.57%), Query Frame = 0
BLAST of CsaV3_5G036860 vs. NCBI nr
Match: XP_022945563.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 127.5 bits (319), Expect = 3.5e-26 Identity = 76/147 (51.70%), Postives = 106/147 (72.11%), Query Frame = 0
BLAST of CsaV3_5G036860 vs. NCBI nr
Match: XP_023542375.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 127.1 bits (318), Expect = 4.6e-26 Identity = 76/147 (51.70%), Postives = 106/147 (72.11%), Query Frame = 0
BLAST of CsaV3_5G036860 vs. TAIR10
Match: AT3G56710.1 (sigma factor binding protein 1) HSP 1 Score: 45.1 bits (105), Expect = 4.2e-05 Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 0
BLAST of CsaV3_5G036860 vs. TAIR10
Match: AT2G41180.1 (VQ motif-containing protein) HSP 1 Score: 43.1 bits (100), Expect = 1.6e-04 Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 0
BLAST of CsaV3_5G036860 vs. Swiss-Prot
Match: sp|Q9LDH1|SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 7.5e-04 Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 0
BLAST of CsaV3_5G036860 vs. TrEMBL
Match: tr|A0A0A0KTR9|A0A0A0KTR9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623915 PE=4 SV=1) HSP 1 Score: 265.4 bits (677), Expect = 7.2e-68 Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
BLAST of CsaV3_5G036860 vs. TrEMBL
Match: tr|A0A1S4DW56|A0A1S4DW56_CUCME (sigma factor binding protein 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103489524 PE=4 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 4.5e-54 Identity = 111/133 (83.46%), Postives = 120/133 (90.23%), Query Frame = 0
BLAST of CsaV3_5G036860 vs. TrEMBL
Match: tr|D1MWZ4|D1MWZ4_CITLA (Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=CitSIB PE=2 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 2.9e-37 Identity = 90/140 (64.29%), Postives = 110/140 (78.57%), Query Frame = 0
BLAST of CsaV3_5G036860 vs. TrEMBL
Match: tr|A0A2N9HZY4|A0A2N9HZY4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45186 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11 Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 0
BLAST of CsaV3_5G036860 vs. TrEMBL
Match: tr|A0A2P4I7E9|A0A2P4I7E9_QUESU (Sigma factor binding protein 2, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_67167 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 8.0e-11 Identity = 46/75 (61.33%), Postives = 52/75 (69.33%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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