CsGy5G027140 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G027140
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	sigma factor binding protein 1, chloroplastic-like
Location	Chr5 : 30828746 .. 30830207 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGGCGGGGGCGGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGCATCGGGTGGCAGTGATGGGAATGGAGAATGGTGGGCATCGGCGTCGTTCGTTGACCACCAAGTGATGGGCGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGCGGGGGTTGGGGGTGTGAGTCCGCTGGATGAATTGGCGTTTCTGCAGAATTTGGATGGGAATTATGCAGAAATGTTGAATGGGTTTTGGCATGATTCTTCGACGGCAGAAAGTGAGATGCCAGGTTTGAGTGCACTGCTGTAGTTTCGGAGTAGTTCATAGTTTCTCCCATTTTTTGATTTTTTGTTTTAACTAAAATGATTTGTATAGATAGATGAAACCTTTCCCAGCCCTTTTTCTTTGTCCACATATAGTTCATATTGTTTTGAATATAATATATACGATCATTTTGAGAATTTATATCAATGTTCTTATGTGTGTGTTTGTTATCCACTGCACTCAGTTTATTATCAAAGGATGGTCACATGATCTCTAACCTGATCCTACTCTGTAGTTTATAATTATGTACGTCTCTTTTTAAATTTGTGAAAAAACTCAACTAAAATTTGGATTGTTAAAATCTGATACACATCTTGCTATCAAAAGTTAATTAAATTTCATATATCTCCTATCAGACCCTGAAAATCTTCTAATCTTGTTTTTGGTAGATTCCTGAATTCTAAAGGATCTTAATCGAGGATTTATATGATACATAAAACTACAAATTTAGGTCCCATTTGATAACGTTAGTATTTGTGTTTTAAAGTTACGTTGGTTTTGTCGGTGGGTAGAATATTTTCGATCAAAATTTTGAAGTTTCGTTGGCCTATGGTTATGAGTTCTTTGGATGCATTTTTTTTATTTTTCTTTTTCCTTTATGTATTCTTTTACCTCGCATTCACATTTACACACATTTTTATAATATACGTATGATGTTATATTTTGTATAATCTATTATTAAAAATGATGAATTGTGGTGTATAAATAAGCGACGACCAAAGTTTCATTCAAGTAATTGTAACAATTTTCATAAAATTTATTGAAATTTCCATCGACGTCAATAATTCAAACCTTAATTTTTTCACCGTTTTTTACAATGATTTTTTAATTTTTCTTAGGGTATCAACATGGTTGAAAAGTTAATAACGAAACAAATAAATTAATAGGTAGGAGTAGTGCTAACTATAGATGTCCAATTTAAGTTAATGGAGTTAAGCTTGCATGTAAGCGTTTTGAGATAGTGCAAGGAAAGTGGCGGAAGGCAAAGGAATTAGACAACCCGTTGAGAGAAAATGCAACATGA

mRNA sequence

ATGATTGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGGCGGGGGCGGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGCATCGGGTGGCAGTGATGGGAATGGAGAATGGTGGGCATCGGCGTCGTTCGTTGACCACCAAGTGATGGGCGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGCGGGGGTTGGGGGTGTGAGTCCGCTGGATGAATTGGCGTTTCTGCAGAATTTGGATGGGAATTATGCAGAAATGTTGAATGGGTTTTGGCATGATTCTTCGACGGCAGAAAGTGAGATGCCAGTTAATGGAGTTAAGCTTGCATGTAAGCGTTTTGAGATAGTGCAAGGAAAGTGGCGGAAGGCAAAGGAATTAGACAACCCGTTGAGAGAAAATGCAACATGA

Coding sequence (CDS)

ATGATTGTAACAGGCAAAAAACAGGCAAAGAGAAGCAAGAAATCGGCGGGGGCGGGTTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTCGATCTCTTGTCCAGAAACTCACCGGTCAGGACTCGGATGCTGAGAGATTCATGGAGATGGCATCGGGTGGCAGTGATGGGAATGGAGAATGGTGGGCATCGGCGTCGTTCGTTGACCACCAAGTGATGGGCGAGGAGGATGTAATGGTGGGAGGAAAGGTGGAAGCGGGGGTTGGGGGTGTGAGTCCGCTGGATGAATTGGCGTTTCTGCAGAATTTGGATGGGAATTATGCAGAAATGTTGAATGGGTTTTGGCATGATTCTTCGACGGCAGAAAGTGAGATGCCAGTTAATGGAGTTAAGCTTGCATGTAAGCGTTTTGAGATAGTGCAAGGAAAGTGGCGGAAGGCAAAGGAATTAGACAACCCGTTGAGAGAAAATGCAACATGA

Protein sequence

MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLNGFWHDSSTAESEMPVNGVKLACKRFEIVQGKWRKAKELDNPLRENAT

Homology

[Close]

BLAST of CsGy5G027140 vs. NCBI nr
Match: XP_004142385.1 (PREDICTED: uncharacterized protein LOC101217123 [Cucumis sativus] >KGN52329.1 hypothetical protein Csa_5G623915 [Cucumis sativus])

HSP 1 Score: 265.4 bits (677), Expect = 1.3e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60
           MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS
Sbjct: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 61  GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 120
           GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN
Sbjct: 61  GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 120

Query: 121 GFWHDSSTAESEMP 135
           GFWHDSSTAESEMP
Sbjct: 121 GFWHDSSTAESEMP 134

[Close]

BLAST of CsGy5G027140 vs. NCBI nr
Match: XP_016900221.1 (PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 219.9 bits (559), Expect = 6.3e-54
Identity = 111/133 (83.46%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60
           M VTGKKQAKRSKKS  A FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS
Sbjct: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 61  GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 120
           G SDGNG+ WASASF+D Q+MGEEDV+VGGK EA  GGV+P D+L FLQNLDGN+AEM N
Sbjct: 61  GASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFN 120

Query: 121 GFWHDSSTAESEM 134
           GFWHDSSTA++EM
Sbjct: 121 GFWHDSSTAQTEM 133

[Close]

BLAST of CsGy5G027140 vs. NCBI nr
Match: BAI52954.1 (sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 163.7 bits (413), Expect = 5.4e-37
Identity = 90/140 (64.29%), Postives = 110/140 (78.57%), Query Frame = 0


Query: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-A 60
           M VTGKKQAKRS+KSA A FKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFME+ A
Sbjct: 1   MNVTGKKQAKRSRKSAAADFKVVYISSPMKVKTSASKFRSLVQRLTGQDSDAERFMELTA 60

Query: 61  SGGSDGNGEWWASASFVDHQVMGEEDVMVGGKV-----EAGVGGVSPLDELAFLQNLDGN 120
           S  SD N +  ASA+F D+Q++G++D++V GKV     E+ V  + P D+LA L NLD +
Sbjct: 61  SAASDRNLQSSASATFFDYQLLGDDDLVVAGKVETAAYESSVAALPPPDDLAVLHNLDAS 120

Query: 121 YAEMLNGFWHDSSTAESEMP 135
           +  M +GFW DS TA++EMP
Sbjct: 121 FGGMFHGFWFDSFTAQAEMP 140

[Close]

BLAST of CsGy5G027140 vs. NCBI nr
Match: XP_022945563.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 127.5 bits (319), Expect = 4.3e-26
Identity = 76/147 (51.70%), Postives = 106/147 (72.11%), Query Frame = 0


Query: 1   MIVTGKKQAK-RSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM- 60
           M +T KKQ+K RS+KSA A FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFME+ 
Sbjct: 1   MDLTAKKQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  -ASGGSDGNG--EWWASASFVDHQVMGEEDV------MVGGKVEAGV--GGVSPLDELAF 120
            A+  SD N      ++++F+D+Q++G++D+      +V GK+E       V+P ++L  
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVAPPEDLV- 120

Query: 121 LQNLDGNYAEMLNGFWHDSSTAESEMP 135
           ++N D ++AEM   F HDSS+ ++EMP
Sbjct: 121 MENFDASFAEMFQSFLHDSSSTQTEMP 146

[Close]

BLAST of CsGy5G027140 vs. NCBI nr
Match: XP_023542375.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.1 bits (318), Expect = 5.6e-26
Identity = 76/147 (51.70%), Postives = 106/147 (72.11%), Query Frame = 0


Query: 1   MIVTGKKQAK-RSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM- 60
           M +T KKQ+K RS+KSA A FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAERFME+ 
Sbjct: 1   MDLTAKKQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  -ASGGSDGNG--EWWASASFVDHQVMGEEDV------MVGGKVEAGV--GGVSPLDELAF 120
            A+  SD N      ++++F+D+Q++G++D+      +V GK+E       V+P ++L  
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVAPPEDLV- 120

Query: 121 LQNLDGNYAEMLNGFWHDSSTAESEMP 135
           +QN D ++AEM   F H+SS+ ++EMP
Sbjct: 121 MQNFDASFAEMFQSFLHESSSTQTEMP 146

[Close]

BLAST of CsGy5G027140 vs. TAIR10
Match: AT3G56710.1 (sigma factor binding protein 1)

HSP 1 Score: 45.1 bits (105), Expect = 5.1e-05
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 15 SAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDS 51
          S     KV YIS+PM+V+T ASKFR LVQ+LTGQD+
Sbjct: 35 STNKPIKVRYISNPMRVQTCASKFRELVQELTGQDA 70

[Close]

BLAST of CsGy5G027140 vs. TAIR10
Match: AT2G41180.1 (VQ motif-containing protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.9e-04
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 21 KVVYISSPMKVKTSASKFRSLVQKLTGQDS 51
          KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Sbjct: 38 KVRYISNPMRVETCPSKFRELVQELTGQDA 67

[Close]

BLAST of CsGy5G027140 vs. Swiss-Prot
Match: sp|Q9LDH1|SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.2e-04
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 15 SAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDS 51
          S     KV YIS+PM+V+T ASKFR LVQ+LTGQD+
Sbjct: 35 STNKPIKVRYISNPMRVQTCASKFRELVQELTGQDA 70

[Close]

BLAST of CsGy5G027140 vs. TrEMBL
Match: tr|A0A0A0KTR9|A0A0A0KTR9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623915 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 8.7e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60
           MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS
Sbjct: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 61  GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 120
           GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN
Sbjct: 61  GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 120

Query: 121 GFWHDSSTAESEMP 135
           GFWHDSSTAESEMP
Sbjct: 121 GFWHDSSTAESEMP 134

[Close]

BLAST of CsGy5G027140 vs. TrEMBL
Match: tr|A0A1S4DW56|A0A1S4DW56_CUCME (sigma factor binding protein 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103489524 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 4.2e-54
Identity = 111/133 (83.46%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60
           M VTGKKQAKRSKKS  A FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS
Sbjct: 1   MNVTGKKQAKRSKKSTAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMAS 60

Query: 61  GGSDGNGEWWASASFVDHQVMGEEDVMVGGKVEAGVGGVSPLDELAFLQNLDGNYAEMLN 120
           G SDGNG+ WASASF+D Q+MGEEDV+VGGK EA  GGV+P D+L FLQNLDGN+AEM N
Sbjct: 61  GASDGNGQSWASASFLDQQLMGEEDVVVGGKEEAAFGGVNPADDLVFLQNLDGNFAEMFN 120

Query: 121 GFWHDSSTAESEM 134
           GFWHDSSTA++EM
Sbjct: 121 GFWHDSSTAQTEM 133

[Close]

BLAST of CsGy5G027140 vs. TrEMBL
Match: tr|D1MWZ4|D1MWZ4_CITLA (Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=CitSIB PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.6e-37
Identity = 90/140 (64.29%), Postives = 110/140 (78.57%), Query Frame = 0


Query: 1   MIVTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEM-A 60
           M VTGKKQAKRS+KSA A FKVVYISSPMKVKTSASKFRSLVQ+LTGQDSDAERFME+ A
Sbjct: 1   MNVTGKKQAKRSRKSAAADFKVVYISSPMKVKTSASKFRSLVQRLTGQDSDAERFMELTA 60

Query: 61  SGGSDGNGEWWASASFVDHQVMGEEDVMVGGKV-----EAGVGGVSPLDELAFLQNLDGN 120
           S  SD N +  ASA+F D+Q++G++D++V GKV     E+ V  + P D+LA L NLD +
Sbjct: 61  SAASDRNLQSSASATFFDYQLLGDDDLVVAGKVETAAYESSVAALPPPDDLAVLHNLDAS 120

Query: 121 YAEMLNGFWHDSSTAESEMP 135
           +  M +GFW DS TA++EMP
Sbjct: 121 FGGMFHGFWFDSFTAQAEMP 140

[Close]

BLAST of CsGy5G027140 vs. TrEMBL
Match: tr|A0A2N9HZY4|A0A2N9HZY4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45186 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 47/78 (60.26%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 3  VTGKKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGG 62
          V GK+QAK SKK    G KVVYI+SPMKVKTSASKFR LVQ+LTGQDSD  R+ME  + G
Sbjct: 10 VKGKRQAKGSKK----GVKVVYIASPMKVKTSASKFRDLVQELTGQDSDTARYMEEVNNG 69

Query: 63 SDGNGEWWASASFVDHQV 81
          +D  G +    +F D Q+
Sbjct: 70 ADHQGPF----NFSDQQL 79

[Close]

BLAST of CsGy5G027140 vs. TrEMBL
Match: tr|A0A2P4I7E9|A0A2P4I7E9_QUESU (Sigma factor binding protein 2, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_67167 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.8e-11
Identity = 46/75 (61.33%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 6  KKQAKRSKKSAGAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMEMASGGSDG 65
          K+QAKRSKK    G KVVYI+SPMKVKTSASKFR LVQ+LTGQDSD  R+ME   G   G
Sbjct: 12 KRQAKRSKK----GIKVVYIASPMKVKTSASKFRDLVQELTGQDSDTARYMEFNGGDHQG 71

Query: 66 NGEWWASASFVDHQV 81
                S +F D Q+
Sbjct: 72 ------SFTFSDQQL 76

The following BLAST results are available for this feature:

BLAST of CsGy5G027140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142385.1	1.3e-67	100.00	PREDICTED: uncharacterized protein LOC101217123 [Cucumis sativus] >KGN52329.1 hy...	[more]
XP_016900221.1	6.3e-54	83.46	PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo]	[more]
BAI52954.1	5.4e-37	64.29	sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris]	[more]
XP_022945563.1	4.3e-26	51.70	sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]	[more]
XP_023542375.1	5.6e-26	51.70	sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy5G027140 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56710.1	5.1e-05	63.89	sigma factor binding protein 1	[more]
AT2G41180.1	1.9e-04	70.00	VQ motif-containing protein	[more]

BLAST of CsGy5G027140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LDH1\|SIB1_ARATH	9.2e-04	63.89	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CsGy5G027140 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KTR9\|A0A0A0KTR9_CUCSA	8.7e-68	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623915 PE=4 SV=1	[more]
tr\|A0A1S4DW56\|A0A1S4DW56_CUCME	4.2e-54	83.46	sigma factor binding protein 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|D1MWZ4\|D1MWZ4_CITLA	3.6e-37	64.29	Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN...	[more]
tr\|A0A2N9HZY4\|A0A2N9HZY4_FAGSY	1.5e-11	60.26	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45186 PE=4 SV=1	[more]
tr\|A0A2P4I7E9\|A0A2P4I7E9_QUESU	9.8e-11	61.33	Sigma factor binding protein 2, chloroplastic OS=Quercus suber OX=58331 GN=CFP56...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0051091	positive regulation of sequence-specific DNA binding transcription factor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR039335	SIB1/2
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0051091	positive regulation of sequence-specific DNA binding transcription factor activity
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G027140.1	CsGy5G027140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 25..51 e-value: 5.0E-12 score: 45.0
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	FAMILY NOT NAMED	coord: 5..64
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 5..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G027140	Cla009928	Watermelon (97103) v1	cgybwmB371
CsGy5G027140	MELO3C012484	Melon (DHL92) v3.5.1	cgybmeB319
CsGy5G027140	ClCG05G026910	Watermelon (Charleston Gray)	cgybwcgB355
CsGy5G027140	CmaCh18G008500	Cucurbita maxima (Rimu)	cgybcmaB626
CsGy5G027140	CmaCh04G013220	Cucurbita maxima (Rimu)	cgybcmaB672
CsGy5G027140	CmoCh04G013940	Cucurbita moschata (Rifu)	cgybcmoB650
CsGy5G027140	Lsi04G000180	Bottle gourd (USVL1VR-Ls)	cgyblsiB337
CsGy5G027140	MELO3C012484.2	Melon (DHL92) v3.6.1	cgybmedB318
CsGy5G027140	CsaV3_5G036860	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G027140	Bhi07G001017	Wax gourd	cgybwgoB489
CsGy5G027140	Carg14413	Silver-seed gourd	carcgybB0720
CsGy5G027140	Carg02002	Silver-seed gourd	carcgybB0831

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G027140	Wild cucumber (PI 183967)	cgybcpiB225
CsGy5G027140	Watermelon (97103) v2	cgybwmbB360
CsGy5G027140	Cucurbita moschata (Rifu)	cgybcmoB603
CsGy5G027140	Cucurbita pepo (Zucchini)	cgybcpeB581
CsGy5G027140	Cucurbita pepo (Zucchini)	cgybcpeB648
CsGy5G027140	Cucumber (Chinese Long) v2	cgybcuB223