ClCG05G026910 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATGTAACCGGCAAAAAACAGGCAAAAAGAAGCAGGAAATCGGCGGCAGCCGATTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTCCGATCTCTCGTTCAGAAACTCACCGGTCAGGACTCCGATGCCAAAAGGTTCATGGAACTGACCGCCTCCGCCGCTAGTGATCGGAATCTTCAATCCTCGGCTTCGGCGACGTTCTTCGACTACCAACTCCTCGGCGACGACGATCTAGTGGTGGCAGGAAAGGTCGAAACAGCGGCGTACGAATCGTCGGTTGCGGCTCTCCCGCCGCAGGATGATTTGGCGGTTCTGCAGAATTTGGATACGAGTTTTGGAGGAATGTTCCATGGCTTTTGGTTTGATTCTTCTACGGCACAGGCTGAGATGCCAGGTTTAAATGCACTACTTTAG ATGAATGTAACCGGCAAAAAACAGGCAAAAAGAAGCAGGAAATCGGCGGCAGCCGATTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTCCGATCTCTCGTTCAGAAACTCACCGGTCAGGACTCCGATGCCAAAAGGTTCATGGAACTGACCGCCTCCGCCGCTAGTGATCGGAATCTTCAATCCTCGGCTTCGGCGACGTTCTTCGACTACCAACTCCTCGGCGACGACGATCTAGTGGTGGCAGGAAAGGTCGAAACAGCGGCGTACGAATCGTCGGTTGCGGCTCTCCCGCCGCAGGATGATTTGGCGGTTCTGCAGAATTTGGATACGAGTTTTGGAGGAATGTTCCATGGCTTTTGGTTTGATTCTTCTACGGCACAGGCTGAGATGCCAGGTTTAAATGCACTACTTTAG ATGAATGTAACCGGCAAAAAACAGGCAAAAAGAAGCAGGAAATCGGCGGCAGCCGATTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTCCGATCTCTCGTTCAGAAACTCACCGGTCAGGACTCCGATGCCAAAAGGTTCATGGAACTGACCGCCTCCGCCGCTAGTGATCGGAATCTTCAATCCTCGGCTTCGGCGACGTTCTTCGACTACCAACTCCTCGGCGACGACGATCTAGTGGTGGCAGGAAAGGTCGAAACAGCGGCGTACGAATCGTCGGTTGCGGCTCTCCCGCCGCAGGATGATTTGGCGGTTCTGCAGAATTTGGATACGAGTTTTGGAGGAATGTTCCATGGCTTTTGGTTTGATTCTTCTACGGCACAGGCTGAGATGCCAGGTTTAAATGCACTACTTTAG MNVTGKKQAKRSRKSAAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAKRFMELTASAASDRNLQSSASATFFDYQLLGDDDLVVAGKVETAAYESSVAALPPQDDLAVLQNLDTSFGGMFHGFWFDSSTAQAEMPGLNALL
BLAST of ClCG05G026910 vs. Swiss-Prot
Match: SIB1_ARATH (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE=1 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 2.2e-06 Identity = 41/127 (32.28%), Postives = 67/127 (52.76%), Query Frame = 1
BLAST of ClCG05G026910 vs. TrEMBL
Match: D1MWZ4_CITLA (Sigma factor binding protein 1 OS=Citrullus lanatus subsp. vulgaris GN=CitSIB PE=2 SV=1) HSP 1 Score: 271.9 bits (694), Expect = 4.4e-70 Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 1
BLAST of ClCG05G026910 vs. TrEMBL
Match: A0A0A0KTR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623915 PE=4 SV=1) HSP 1 Score: 180.6 bits (457), Expect = 1.3e-42 Identity = 97/146 (66.44%), Postives = 118/146 (80.82%), Query Frame = 1
BLAST of ClCG05G026910 vs. TrEMBL
Match: A0A067L8W8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24548 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 1.9e-12 Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 1
BLAST of ClCG05G026910 vs. TrEMBL
Match: A0A061FST3_THECC (Sigma factor binding protein 1, putative OS=Theobroma cacao GN=TCM_045032 PE=4 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 3.0e-10 Identity = 54/122 (44.26%), Postives = 74/122 (60.66%), Query Frame = 1
BLAST of ClCG05G026910 vs. TrEMBL
Match: M5XE50_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013276mg PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 3.9e-10 Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 1
BLAST of ClCG05G026910 vs. TAIR10
Match: AT3G56710.1 (AT3G56710.1 sigma factor binding protein 1) HSP 1 Score: 53.5 bits (127), Expect = 1.2e-07 Identity = 41/127 (32.28%), Postives = 67/127 (52.76%), Query Frame = 1
BLAST of ClCG05G026910 vs. TAIR10
Match: AT2G41180.1 (AT2G41180.1 VQ motif-containing protein) HSP 1 Score: 47.4 bits (111), Expect = 8.9e-06 Identity = 25/43 (58.14%), Postives = 29/43 (67.44%), Query Frame = 1
BLAST of ClCG05G026910 vs. NCBI nr
Match: gi|270309002|dbj|BAI52954.1| (sigma factor binding protein 1 [Citrullus lanatus subsp. vulgaris]) HSP 1 Score: 271.9 bits (694), Expect = 6.3e-70 Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 1
BLAST of ClCG05G026910 vs. NCBI nr
Match: gi|659092245|ref|XP_008446972.1| (PREDICTED: sigma factor binding protein 1, chloroplastic-like [Cucumis melo]) HSP 1 Score: 191.8 bits (486), Expect = 8.3e-46 Identity = 105/146 (71.92%), Postives = 117/146 (80.14%), Query Frame = 1
BLAST of ClCG05G026910 vs. NCBI nr
Match: gi|449449264|ref|XP_004142385.1| (PREDICTED: uncharacterized protein LOC101217123 [Cucumis sativus]) HSP 1 Score: 180.6 bits (457), Expect = 1.9e-42 Identity = 97/146 (66.44%), Postives = 118/146 (80.82%), Query Frame = 1
BLAST of ClCG05G026910 vs. NCBI nr
Match: gi|802574171|ref|XP_012068696.1| (PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]) HSP 1 Score: 80.5 bits (197), Expect = 2.7e-12 Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 1
BLAST of ClCG05G026910 vs. NCBI nr
Match: gi|969999712|ref|XP_015084304.1| (PREDICTED: sigma factor binding protein 1, chloroplastic-like [Solanum pennellii]) HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10 Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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