Lsi03G002860 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G002860
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Polyadenylate-binding-interacting protein 2-like protein
Location	chr03 : 3473594 .. 3474564 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAACGGCGTGCAGTGCAGTGTCATAAAGTTTCGTCGATTAGTCGAAGAAATCAACCCGTTTCAAAAACCTTGGGCCGAATTCCATCTTCTTTTGCCTTTAAACAGTGTCATTTCCGTAATAAAACGAAACCCTGAGTGCTATTTCACTTTTCATTTTTATATATTTCATCCCCAATCTCTCCATAAAACTTCGTCTTCAATCTCAAGCTTCAATTAAGCAAGCAGTGGCTATGGATGTGGTTACTCAAAGAAACTCGTCTTCCTCCGTTTCCATGTTGAATCCTAACGCTCCTTTGTTCGTTCCGATGGCGTATAGGACGGTAGAAGATTTCTCCGACCAGTGGTGGAATCTGATCCACTCGTCGCCGTGGTTCCGTGAGTACTGGCTTCAAGAACGCTTTCAAGATCCTCAAAATGATCTTCCGTTTGCAGAAAATGAAGAATTTGTTCTTCCGGATCTTGAAAGTTTCTTCGACGACTTCACTCGTCAACGTAAGAAACGAAATCGAGTCATCGATTCAGTCAATTTGTTTTGTAATTTGTTGTTTACTAATTTGTTGTTTCTTCTGTTTTCTTCTTCAGAGGAAGAGGAAGAATTGGAGTTTTCGAAGGATTTGGTTCCAATGGGAGCTTTCAAATGGCAGAAGGCTCGGTCTGGAGCGGAGGTTCCTAAGTATGCTCAAAAGGCTCCCAAGATCGTGAACGTGAAAGTGAGTCCGAGGACGATTCACCAGCCGAGATAGACTTGACGCGGTATTTCCAACTCATCGAGTACGTTTCTTCATCAGAACTCAGGAACCAGTTTGAATTGTTGTTGATCTAGGTTTTCCATTTCGTTTATGTACAGAGTCTAGAACTTGATCTGTTACAAATTAACTCTGATGGTCTGTGTTTAGTTTATGTAAATTTGTACCAAGTCTTACTTTCAATTATGATATAATAAAAAGAGTTTCAAAATTCTCAACAAA

mRNA sequence

CAAAAACGGCGTGCAGTGCAGTGTCATAAAGTTTCGTCGATTAGTCGAAGAAATCAACCCGTTTCAAAAACCTTGGGCCGAATTCCATCTTCTTTTGCCTTTAAACAGTGTCATTTCCGTAATAAAACGAAACCCTGAGTGCTATTTCACTTTTCATTTTTATATATTTCATCCCCAATCTCTCCATAAAACTTCGTCTTCAATCTCAAGCTTCAATTAAGCAAGCAGTGGCTATGGATGTGGTTACTCAAAGAAACTCGTCTTCCTCCGTTTCCATGTTGAATCCTAACGCTCCTTTGTTCGTTCCGATGGCGTATAGGACGGTAGAAGATTTCTCCGACCAGTGGTGGAATCTGATCCACTCGTCGCCGTGGTTCCGTGAGTACTGGCTTCAAGAACGCTTTCAAGATCCTCAAAATGATCTTCCGTTTGCAGAAAATGAAGAATTTGTTCTTCCGGATCTTGAAAGTTTCTTCGACGACTTCACTCGTCAACAGGAAGAGGAAGAATTGGAGTTTTCGAAGGATTTGGTTCCAATGGGAGCTTTCAAATGGCAGAAGGCTCGGTCTGGAGCGGAGGTTCCTAAGTATGCTCAAAAGGCTCCCAAGATCGTGAACGTGAAAGTGAGTCCGAGGACGATTCACCAGCCGAGATAGACTTGACGCGGTATTTCCAACTCATCGAGTACGTTTCTTCATCAGAACTCAGGAACCAGTTTGAATTGTTGTTGATCTAGGTTTTCCATTTCGTTTATGTACAGAGTCTAGAACTTGATCTGTTACAAATTAACTCTGATGGTCTGTGTTTAGTTTATGTAAATTTGTACCAAGTCTTACTTTCAATTATGATATAATAAAAAGAGTTTCAAAATTCTCAACAAA

Coding sequence (CDS)

ATGGATGTGGTTACTCAAAGAAACTCGTCTTCCTCCGTTTCCATGTTGAATCCTAACGCTCCTTTGTTCGTTCCGATGGCGTATAGGACGGTAGAAGATTTCTCCGACCAGTGGTGGAATCTGATCCACTCGTCGCCGTGGTTCCGTGAGTACTGGCTTCAAGAACGCTTTCAAGATCCTCAAAATGATCTTCCGTTTGCAGAAAATGAAGAATTTGTTCTTCCGGATCTTGAAAGTTTCTTCGACGACTTCACTCGTCAACAGGAAGAGGAAGAATTGGAGTTTTCGAAGGATTTGGTTCCAATGGGAGCTTTCAAATGGCAGAAGGCTCGGTCTGGAGCGGAGGTTCCTAAGTATGCTCAAAAGGCTCCCAAGATCGTGAACGTGAAAGTGAGTCCGAGGACGATTCACCAGCCGAGATAG

Protein sequence

MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIHSSPWFREYWLQERFQDPQNDLPFAENEEFVLPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYAQKAPKIVNVKVSPRTIHQPR

Homology

[Close]

BLAST of Lsi03G002860 vs. Swiss-Prot
Match: ERD15_ARATH (Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana GN=ERD15 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.6e-14
Identity = 55/156 (35.26%), Postives = 74/156 (47.44%), Query Frame = 1


Query: 14  SMLNPNAPLFVPMAYRTVEDFSDQWWNLIHSSPWFREYWLQERFQDPQNDLPFAEN---- 73
           S LNP+APLF+P A R VEDFS +WW L+ +S W+ +YW+ ++ Q         EN    
Sbjct: 9   STLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYDNGENENGG 68

Query: 74  ----------EEFVLPDLESFFDDFTRQ-----------QEEEELEFSK--DLVPMGAFK 133
                     E F   D+E FFD    +           Q   E  F K  ++V   +  
Sbjct: 69  GHIDVADLLPESFDFDDMEDFFDTDAAEFDQGFDGRMYYQAPSEFGFGKNGEMVKKSSGN 128

Query: 134 WQKARSGAEVPKYAQKAPKIVNVKV--SPRTIHQPR 141
            +  RS  E  KYA+K  K  N +V  +PR IHQPR
Sbjct: 129 -RSPRSIVEPAKYAEKPAKWGNQRVAAAPRNIHQPR 163

[Close]

BLAST of Lsi03G002860 vs. Swiss-Prot
Match: CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09
Identity = 45/137 (32.85%), Postives = 68/137 (49.64%), Query Frame = 1


Query: 13  VSMLNPNAPLFVPMAYRTVEDFSDQWWNLIHSSPWFREYWLQERFQDP---QNDLPFAE- 72
           +S LNPNAP+F P+ +R VEDFS +WW+L+ +S WFR++WL    ++     +D    E 
Sbjct: 9   LSTLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFLGGDDFSVMEE 68

Query: 73  --NEEFVLPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYAQKAPKI 132
              E     D  S  D  T       L+   ++      K  +++  +  PKY QK  K 
Sbjct: 69  EFEEMIASSDGGSMADTVTEADVASYLKMLLNIAESTKEKIYRSKVSSCSPKYNQK--KY 128

Query: 133 VNVKVSPRT---IHQPR 141
           +N   + R    I+QPR
Sbjct: 129 MNPNFNCRRNHHIYQPR 143

[Close]

BLAST of Lsi03G002860 vs. TrEMBL
Match: A0A0A0KBP8_CUCSA (Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis sativus GN=Csa_6G013350 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 7.7e-72
Identity = 134/140 (95.71%), Postives = 136/140 (97.14%), Query Frame = 1


Query: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIHSSPWFREYWLQERFQDP 60
           MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWW LI SSPWFREYWLQERFQDP
Sbjct: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWELIQSSPWFREYWLQERFQDP 60

Query: 61  QNDLPFAENEEFVLPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA 120
           QN+L F ENEEF+LPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA
Sbjct: 61  QNELSFGENEEFILPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA 120

Query: 121 QKAPKIVNVKVSPRTIHQPR 141
           QKAPKIVNVKVSPRTIHQPR
Sbjct: 121 QKAPKIVNVKVSPRTIHQPR 140

[Close]

BLAST of Lsi03G002860 vs. TrEMBL
Match: Q6ELF9_CUCSA (Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 9.8e-67
Identity = 126/132 (95.45%), Postives = 128/132 (96.97%), Query Frame = 1


Query: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIHSSPWFREYWLQERFQDP 60
           MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWW LI SSPWFREYWLQERFQDP
Sbjct: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWELIQSSPWFREYWLQERFQDP 60

Query: 61  QNDLPFAENEEFVLPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA 120
           QN+L F ENEEF+LPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA
Sbjct: 61  QNELSFGENEEFILPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA 120

Query: 121 QKAPKIVNVKVS 133
           QKAPKIVNVKVS
Sbjct: 121 QKAPKIVNVKVS 132

[Close]

BLAST of Lsi03G002860 vs. TrEMBL
Match: V4SMQ7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033013mg PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.2e-41
Identity = 84/140 (60.00%), Postives = 109/140 (77.86%), Query Frame = 1


Query: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIHSSPWFREYWLQERFQDP 60
           M+V++QR+SSSS S LNPNAP+F+P AYR VEDFSD+WW LI SSPWFR+YWLQE + DP
Sbjct: 5   MEVLSQRSSSSSTSTLNPNAPMFIPFAYRMVEDFSDEWWALIQSSPWFRDYWLQECYFDP 64

Query: 61  QNDLPFAENEEFVLPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA 120
           Q+D  F++ ++ VLPD++  F D   Q+E EE +F KDLV +G  KW+K  +  E  +Y+
Sbjct: 65  QSDPLFSDFDDLVLPDVDEIFPD-KHQEEMEERDFCKDLVSLGTLKWKKGGAMIEKQRYS 124

Query: 121 QKAPKIVNVKVSPRTIHQPR 141
           +KAPKIV+VKVSPRTI QPR
Sbjct: 125 EKAPKIVSVKVSPRTIQQPR 143

[Close]

BLAST of Lsi03G002860 vs. TrEMBL
Match: A0A067E1T5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032323mg PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.1e-41
Identity = 84/140 (60.00%), Postives = 109/140 (77.86%), Query Frame = 1


Query: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIHSSPWFREYWLQERFQDP 60
           M+V++QR+SSSS S LNPNAP+F+P AYR VEDFSD+WW LI SSPWFR+YWLQE + DP
Sbjct: 5   MEVLSQRSSSSSTSTLNPNAPMFIPFAYRMVEDFSDEWWALIQSSPWFRDYWLQECYFDP 64

Query: 61  QNDLPFAENEEFVLPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA 120
           Q+D  F++ ++ VLPD++  F D   Q+E EE +F KDLV +G  KW+K  +  E  +Y+
Sbjct: 65  QSDPLFSDFDDLVLPDVDEIFPD-KHQEEIEERDFCKDLVSLGTLKWKKGGAMIEKQRYS 124

Query: 121 QKAPKIVNVKVSPRTIHQPR 141
           +KAPKIV+VKVSPRTI QPR
Sbjct: 125 EKAPKIVSVKVSPRTIQQPR 143

[Close]

BLAST of Lsi03G002860 vs. TrEMBL
Match: W9QXE6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012280 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.4e-41
Identity = 87/143 (60.84%), Postives = 109/143 (76.22%), Query Frame = 1


Query: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIHSSPWFREYWLQERFQDP 60
           MDV++ R+SSSS S LNPNAP+FVP+AYRTVEDFSD+WW L+ SSPWFR+YWLQER+ DP
Sbjct: 3   MDVISGRSSSSS-STLNPNAPMFVPLAYRTVEDFSDEWWALVQSSPWFRDYWLQERYCDP 62

Query: 61  QNDLPFAENEEFVLPDLESFFDD---FTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVP 120
           Q D  F +  +  L D++SFFDD     + +EE E ++SK LV +GA KW+K R+ AE P
Sbjct: 63  QTDPSFFDIYDLALLDVDSFFDDDVSSMKTEEEGERDYSKKLVRLGALKWRKGRALAEAP 122

Query: 121 KYAQKAPKIVNVKVSPRTIHQPR 141
           +Y +K PKIV VK SPRTI QPR
Sbjct: 123 RYIEKVPKIVKVKPSPRTIQQPR 144

[Close]

BLAST of Lsi03G002860 vs. TAIR10
Match: AT2G41430.1 (AT2G41430.1 dehydration-induced protein (ERD15))

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-15
Identity = 55/156 (35.26%), Postives = 74/156 (47.44%), Query Frame = 1


Query: 14  SMLNPNAPLFVPMAYRTVEDFSDQWWNLIHSSPWFREYWLQERFQDPQNDLPFAEN---- 73
           S LNP+APLF+P A R VEDFS +WW L+ +S W+ +YW+ ++ Q         EN    
Sbjct: 9   STLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYDNGENENGG 68

Query: 74  ----------EEFVLPDLESFFDDFTRQ-----------QEEEELEFSK--DLVPMGAFK 133
                     E F   D+E FFD    +           Q   E  F K  ++V   +  
Sbjct: 69  GHIDVADLLPESFDFDDMEDFFDTDAAEFDQGFDGRMYYQAPSEFGFGKNGEMVKKSSGN 128

Query: 134 WQKARSGAEVPKYAQKAPKIVNVKV--SPRTIHQPR 141
            +  RS  E  KYA+K  K  N +V  +PR IHQPR
Sbjct: 129 -RSPRSIVEPAKYAEKPAKWGNQRVAAAPRNIHQPR 163

[Close]

BLAST of Lsi03G002860 vs. TAIR10
Match: AT4G14270.1 (AT4G14270.1 Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins.)

HSP 1 Score: 64.3 bits (155), Expect = 6.8e-11
Identity = 45/137 (32.85%), Postives = 68/137 (49.64%), Query Frame = 1


Query: 13  VSMLNPNAPLFVPMAYRTVEDFSDQWWNLIHSSPWFREYWLQERFQDP---QNDLPFAE- 72
           +S LNPNAP+F P+ +R VEDFS +WW+L+ +S WFR++WL    ++     +D    E 
Sbjct: 9   LSTLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFLGGDDFSVMEE 68

Query: 73  --NEEFVLPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYAQKAPKI 132
              E     D  S  D  T       L+   ++      K  +++  +  PKY QK  K 
Sbjct: 69  EFEEMIASSDGGSMADTVTEADVASYLKMLLNIAESTKEKIYRSKVSSCSPKYNQK--KY 128

Query: 133 VNVKVSPRT---IHQPR 141
           +N   + R    I+QPR
Sbjct: 129 MNPNFNCRRNHHIYQPR 143

[Close]

BLAST of Lsi03G002860 vs. NCBI nr
Match: gi|700190608|gb|KGN45812.1| (Poly(A)-binding protein C-terminal interacting protein 6 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71
Identity = 134/140 (95.71%), Postives = 136/140 (97.14%), Query Frame = 1


Query: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIHSSPWFREYWLQERFQDP 60
           MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWW LI SSPWFREYWLQERFQDP
Sbjct: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWELIQSSPWFREYWLQERFQDP 60

Query: 61  QNDLPFAENEEFVLPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA 120
           QN+L F ENEEF+LPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA
Sbjct: 61  QNELSFGENEEFILPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA 120

Query: 121 QKAPKIVNVKVSPRTIHQPR 141
           QKAPKIVNVKVSPRTIHQPR
Sbjct: 121 QKAPKIVNVKVSPRTIHQPR 140

[Close]

BLAST of Lsi03G002860 vs. NCBI nr
Match: gi|821595273|ref|NP_001295813.1| (protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 1.4e-66
Identity = 126/132 (95.45%), Postives = 128/132 (96.97%), Query Frame = 1


Query: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIHSSPWFREYWLQERFQDP 60
           MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWW LI SSPWFREYWLQERFQDP
Sbjct: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWELIQSSPWFREYWLQERFQDP 60

Query: 61  QNDLPFAENEEFVLPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA 120
           QN+L F ENEEF+LPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA
Sbjct: 61  QNELSFGENEEFILPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA 120

Query: 121 QKAPKIVNVKVS 133
           QKAPKIVNVKVS
Sbjct: 121 QKAPKIVNVKVS 132

[Close]

BLAST of Lsi03G002860 vs. NCBI nr
Match: gi|567886632|ref|XP_006435838.1| (hypothetical protein CICLE_v10033013mg [Citrus clementina])

HSP 1 Score: 176.0 bits (445), Expect = 4.5e-41
Identity = 84/140 (60.00%), Postives = 109/140 (77.86%), Query Frame = 1


Query: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIHSSPWFREYWLQERFQDP 60
           M+V++QR+SSSS S LNPNAP+F+P AYR VEDFSD+WW LI SSPWFR+YWLQE + DP
Sbjct: 5   MEVLSQRSSSSSTSTLNPNAPMFIPFAYRMVEDFSDEWWALIQSSPWFRDYWLQECYFDP 64

Query: 61  QNDLPFAENEEFVLPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA 120
           Q+D  F++ ++ VLPD++  F D   Q+E EE +F KDLV +G  KW+K  +  E  +Y+
Sbjct: 65  QSDPLFSDFDDLVLPDVDEIFPD-KHQEEMEERDFCKDLVSLGTLKWKKGGAMIEKQRYS 124

Query: 121 QKAPKIVNVKVSPRTIHQPR 141
           +KAPKIV+VKVSPRTI QPR
Sbjct: 125 EKAPKIVSVKVSPRTIQQPR 143

[Close]

BLAST of Lsi03G002860 vs. NCBI nr
Match: gi|641825580|gb|KDO44846.1| (hypothetical protein CISIN_1g032323mg [Citrus sinensis])

HSP 1 Score: 175.6 bits (444), Expect = 5.9e-41
Identity = 84/140 (60.00%), Postives = 109/140 (77.86%), Query Frame = 1


Query: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIHSSPWFREYWLQERFQDP 60
           M+V++QR+SSSS S LNPNAP+F+P AYR VEDFSD+WW LI SSPWFR+YWLQE + DP
Sbjct: 5   MEVLSQRSSSSSTSTLNPNAPMFIPFAYRMVEDFSDEWWALIQSSPWFRDYWLQECYFDP 64

Query: 61  QNDLPFAENEEFVLPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA 120
           Q+D  F++ ++ VLPD++  F D   Q+E EE +F KDLV +G  KW+K  +  E  +Y+
Sbjct: 65  QSDPLFSDFDDLVLPDVDEIFPD-KHQEEIEERDFCKDLVSLGTLKWKKGGAMIEKQRYS 124

Query: 121 QKAPKIVNVKVSPRTIHQPR 141
           +KAPKIV+VKVSPRTI QPR
Sbjct: 125 EKAPKIVSVKVSPRTIQQPR 143

[Close]

BLAST of Lsi03G002860 vs. NCBI nr
Match: gi|703063768|ref|XP_010087036.1| (hypothetical protein L484_012280 [Morus notabilis])

HSP 1 Score: 175.3 bits (443), Expect = 7.7e-41
Identity = 87/143 (60.84%), Postives = 109/143 (76.22%), Query Frame = 1


Query: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIHSSPWFREYWLQERFQDP 60
           MDV++ R+SSSS S LNPNAP+FVP+AYRTVEDFSD+WW L+ SSPWFR+YWLQER+ DP
Sbjct: 3   MDVISGRSSSSS-STLNPNAPMFVPLAYRTVEDFSDEWWALVQSSPWFRDYWLQERYCDP 62

Query: 61  QNDLPFAENEEFVLPDLESFFDD---FTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVP 120
           Q D  F +  +  L D++SFFDD     + +EE E ++SK LV +GA KW+K R+ AE P
Sbjct: 63  QTDPSFFDIYDLALLDVDSFFDDDVSSMKTEEEGERDYSKKLVRLGALKWRKGRALAEAP 122

Query: 121 KYAQKAPKIVNVKVSPRTIHQPR 141
           +Y +K PKIV VK SPRTI QPR
Sbjct: 123 RYIEKVPKIVKVKPSPRTIQQPR 144

The following BLAST results are available for this feature:

BLAST of Lsi03G002860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ERD15_ARATH	3.6e-14	35.26	Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana GN=ERD15 PE=1...	[more]
CID2_ARATH	1.2e-09	32.85	Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=C...	[more]

BLAST of Lsi03G002860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBP8_CUCSA	7.7e-72	95.71	Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis sativus GN=C...	[more]
Q6ELF9_CUCSA	9.8e-67	95.45	Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis sativus PE=2...	[more]
V4SMQ7_9ROSI	3.2e-41	60.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033013mg PE=4 SV=1	[more]
A0A067E1T5_CITSI	4.1e-41	60.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032323mg PE=4 SV=1	[more]
W9QXE6_9ROSA	5.4e-41	60.84	Uncharacterized protein OS=Morus notabilis GN=L484_012280 PE=4 SV=1	[more]

BLAST of Lsi03G002860 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41430.1	2.0e-15	35.26	dehydration-induced protein (ERD15)	[more]
AT4G14270.1	6.8e-11	32.85	Protein containing PAM2 motif which mediates interaction with the PA...	[more]

BLAST of Lsi03G002860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190608\|gb\|KGN45812.1\|	1.1e-71	95.71	Poly(A)-binding protein C-terminal interacting protein 6 [Cucumis sativus]	[more]
gi\|821595273\|ref\|NP_001295813.1\|	1.4e-66	95.45	protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucumis sativus]	[more]
gi\|567886632\|ref\|XP_006435838.1\|	4.5e-41	60.00	hypothetical protein CICLE_v10033013mg [Citrus clementina]	[more]
gi\|641825580\|gb\|KDO44846.1\|	5.9e-41	60.00	hypothetical protein CISIN_1g032323mg [Citrus sinensis]	[more]
gi\|703063768\|ref\|XP_010087036.1\|	7.7e-41	60.84	hypothetical protein L484_012280 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G002860.1	Lsi03G002860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33790	FAMILY NOT NAMED	coord: 6..140 score: 1.1
None	No IPR available	PANTHER	PTHR33790:SF3	SUBFAMILY NOT NAMED	coord: 6..140 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G002860	Csa6G013350	Cucumber (Chinese Long) v2	culsiB444
Lsi03G002860	CSPI06G01910	Wild cucumber (PI 183967)	cpilsiB451
Lsi03G002860	Cucsa.136830	Cucumber (Gy14) v1	cgylsiB216
Lsi03G002860	CmaCh04G028850	Cucurbita maxima (Rimu)	cmalsiB656
Lsi03G002860	CmaCh15G001480	Cucurbita maxima (Rimu)	cmalsiB276
Lsi03G002860	CmoCh15G001620	Cucurbita moschata (Rifu)	cmolsiB265
Lsi03G002860	CmoCh04G030100	Cucurbita moschata (Rifu)	cmolsiB645
Lsi03G002860	Cla006610	Watermelon (97103) v1	lsiwmB277
Lsi03G002860	MELO3C019981	Melon (DHL92) v3.5.1	lsimeB256
Lsi03G002860	ClCG11G005940	Watermelon (Charleston Gray)	lsiwcgB226
Lsi03G002860	MELO3C019981.2	Melon (DHL92) v3.6.1	lsimedB269
Lsi03G002860	Cla97C11G212840	Watermelon (97103) v2	lsiwmbB222
Lsi03G002860	Bhi04G001863	Wax gourd	lsiwgoB322
Lsi03G002860	Cp4.1LG01g21820	Cucurbita pepo (Zucchini)	cpelsiB339
Lsi03G002860	Cp4.1LG13g07330	Cucurbita pepo (Zucchini)	cpelsiB143
Lsi03G002860	Carg02140	Silver-seed gourd	carlsiB236
Lsi03G002860	Carg05958	Silver-seed gourd	carlsiB017
Lsi03G002860	CsaV3_6G002060	Cucumber (Chinese Long) v3	cuclsiB473

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G002860	Bottle gourd (USVL1VR-Ls)	lsilsiB072
Lsi03G002860	Bottle gourd (USVL1VR-Ls)	lsilsiB128
Lsi03G002860	Cucumber (Gy14) v1	cgylsiB204
Lsi03G002860	Cucumber (Gy14) v1	cgylsiB231
Lsi03G002860	Cucurbita maxima (Rimu)	cmalsiB610
Lsi03G002860	Cucurbita maxima (Rimu)	cmalsiB659
Lsi03G002860	Cucurbita maxima (Rimu)	cmalsiB660
Lsi03G002860	Cucurbita maxima (Rimu)	cmalsiB752
Lsi03G002860	Cucurbita moschata (Rifu)	cmolsiB598
Lsi03G002860	Cucurbita moschata (Rifu)	cmolsiB648
Lsi03G002860	Cucurbita pepo (Zucchini)	cpelsiB064
Lsi03G002860	Cucurbita pepo (Zucchini)	cpelsiB341
Lsi03G002860	Wild cucumber (PI 183967)	cpilsiB280
Lsi03G002860	Cucumber (Chinese Long) v2	culsiB282
Lsi03G002860	Cucumber (Chinese Long) v2	culsiB361
Lsi03G002860	Melon (DHL92) v3.5.1	lsimeB245
Lsi03G002860	Melon (DHL92) v3.5.1	lsimeB276
Lsi03G002860	Watermelon (Charleston Gray)	lsiwcgB225
Lsi03G002860	Watermelon (Charleston Gray)	lsiwcgB240
Lsi03G002860	Watermelon (Charleston Gray)	lsiwcgB250
Lsi03G002860	Watermelon (97103) v1	lsiwmB253
Lsi03G002860	Watermelon (97103) v1	lsiwmB266
Lsi03G002860	Cucumber (Gy14) v2	cgyblsiB262
Lsi03G002860	Cucumber (Gy14) v2	cgyblsiB409
Lsi03G002860	Melon (DHL92) v3.6.1	lsimedB289
Lsi03G002860	Silver-seed gourd	carlsiB505
Lsi03G002860	Silver-seed gourd	carlsiB603
Lsi03G002860	Cucumber (Chinese Long) v3	cuclsiB303
Lsi03G002860	Cucumber (Chinese Long) v3	cuclsiB386
Lsi03G002860	Watermelon (97103) v2	lsiwmbB221
Lsi03G002860	Watermelon (97103) v2	lsiwmbB234
Lsi03G002860	Watermelon (97103) v2	lsiwmbB243
Lsi03G002860	Wax gourd	lsiwgoB298
Lsi03G002860	Wax gourd	lsiwgoB335