CmoCh04G030100 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G030100
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Polyadenylate-binding-interacting protein 2-like protein
Location	Cmo_Chr04 : 21161162 .. 21162301 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTAAAAATAATATATTAAAAAAGTAAAAAGACAAAAGGGTACACAGTTTTGGATAAGAATGATGACGTGCAGCAATGTGGGGGCGAAACCCGTGTGGCGGTATGTCATGTTTTGTCGGGTAGTCAAGAAATCAACCTGTTTTTGGGCCGGCGGAGAAGACTCACTTTCCAAAACCTTGGGCCGGATTCCTTTACAGTGTCATTTCCGTAATATAACCAAACCCTGAGTGCAAATTCATTTCTTCAGTTTTATATATCTCTTCCCCAGCTCTGGATAAAACTTCATCTGCAACTCCTTGATTCGTTTTCGCAAGCAGTAGCTATGGATGTGGTTGCTCGAAGAACCTCCTCGTCTTCCGTTTCGATGTTGAACCCTAATGCTCCGTTGTTCGTTCCCATGGCGTACAGGACGGTCGAGGATTTCTCTGACCAGTGGTGGAATTTGATCCAGTCCTCCCCGTGGTTTCGCGAGTACTGGCTTCAAGAACGCTTTCAAGATCCTCAAAACGATTTTTCATTTGCAGAGAATGAAGAAATTGTTCTTCCGGATCTCGAGAATATTTTCGAGGACTTCGCTCGTCAACGTAAGTGATGAAATCTAGTCACTGGTTGAGTCGATTCGTTCCCTCTCTTGACAAATCTAACGAACTCGTTGTTTCTTTTGTTTTCTTCTTCAGAGGAAGAGGAAGAATTTGAATTCTCCAAGGATTTGGTGCCAATGGGGGCTTTCAAATGGCATAAGGCTCAGACTGGAGCCGAGGTTCCCAGGTATGCTCAAAAGGCTCCCAAGATCGTGAACGTGAAAGTGAGTCCGAGAACGATTCACCAGCCGAGATAGATTCGTCGCGGAATTTCCAACTGATCGGAGTATGTTTCTTCAACAGAACTCAGGAACCAGTTTAAATTGTTGTGGATCTAGGTTTTCCATTTCGTCCATGTATAGAGTCTAGAACTTGATCGGTTAAGCATCAACTCTGATGATCTATGTTTAGCTACTGTAAATTTGTACCAAGTCTTACTTTTCAATTATGATATAATAAAATAGTTCCAAAATTCTCAACCAAGTAGCTCGATCATCAACGAAATCCAAGCTAACAACATCGGAATTCGAAGAATTCATGTTCACCTGGAAACACTGAG

mRNA sequence

CGTAAAAATAATATATTAAAAAAGTAAAAAGACAAAAGGGTACACAGTTTTGGATAAGAATGATGACGTGCAGCAATGTGGGGGCGAAACCCGTGTGGCGGTATGTCATGTTTTGTCGGGTAGTCAAGAAATCAACCTGTTTTTGGGCCGGCGGAGAAGACTCACTTTCCAAAACCTTGGGCCGGATTCCTTTACAGTGTCATTTCCGTAATATAACCAAACCCTGAGTGCAAATTCATTTCTTCAGTTTTATATATCTCTTCCCCAGCTCTGGATAAAACTTCATCTGCAACTCCTTGATTCGTTTTCGCAAGCAGTAGCTATGGATGTGGTTGCTCGAAGAACCTCCTCGTCTTCCGTTTCGATGTTGAACCCTAATGCTCCGTTGTTCGTTCCCATGGCGTACAGGACGGTCGAGGATTTCTCTGACCAGTGGTGGAATTTGATCCAGTCCTCCCCGTGGTTTCGCGAGTACTGGCTTCAAGAACGCTTTCAAGATCCTCAAAACGATTTTTCATTTGCAGAGAATGAAGAAATTGTTCTTCCGGATCTCGAGAATATTTTCGAGGACTTCGCTCGTCAACAGGAAGAGGAAGAATTTGAATTCTCCAAGGATTTGGTGCCAATGGGGGCTTTCAAATGGCATAAGGCTCAGACTGGAGCCGAGGTTCCCAGGTATGCTCAAAAGGCTCCCAAGATCGTGAACGTGAAAGTGAGTCCGAGAACGATTCACCAGCCGAGATAGATTCGTCGCGGAATTTCCAACTGATCGGAGTATGTTTCTTCAACAGAACTCAGGAACCAGTTTAAATTGTTGTGGATCTAGGTTTTCCATTTCGTCCATGTATAGAGTCTAGAACTTGATCGGTTAAGCATCAACTCTGATGATCTATGTTTAGCTACTGTAAATTTGTACCAAGTCTTACTTTTCAATTATGATATAATAAAATAGTTCCAAAATTCTCAACCAAGTAGCTCGATCATCAACGAAATCCAAGCTAACAACATCGGAATTCGAAGAATTCATGTTCACCTGGAAACACTGAG

Coding sequence (CDS)

ATGGATGTGGTTGCTCGAAGAACCTCCTCGTCTTCCGTTTCGATGTTGAACCCTAATGCTCCGTTGTTCGTTCCCATGGCGTACAGGACGGTCGAGGATTTCTCTGACCAGTGGTGGAATTTGATCCAGTCCTCCCCGTGGTTTCGCGAGTACTGGCTTCAAGAACGCTTTCAAGATCCTCAAAACGATTTTTCATTTGCAGAGAATGAAGAAATTGTTCTTCCGGATCTCGAGAATATTTTCGAGGACTTCGCTCGTCAACAGGAAGAGGAAGAATTTGAATTCTCCAAGGATTTGGTGCCAATGGGGGCTTTCAAATGGCATAAGGCTCAGACTGGAGCCGAGGTTCCCAGGTATGCTCAAAAGGCTCCCAAGATCGTGAACGTGAAAGTGAGTCCGAGAACGATTCACCAGCCGAGATAG

Homology

[Close]

BLAST of CmoCh04G030100 vs. Swiss-Prot
Match: ERD15_ARATH (Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana GN=ERD15 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-11
Identity = 51/156 (32.69%), Postives = 77/156 (49.36%), Query Frame = 1


Query: 14  SMLNPNAPLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQERFQDPQNDFSFAENEE-- 73
           S LNP+APLF+P A R VEDFS +WW L+ +S W+ +YW+ ++ Q     +   ENE   
Sbjct: 9   STLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYDNGENENGG 68

Query: 74  ------IVLP------DLENIFEDFA---------RQQEEEEFEF----SKDLVPMGAFK 133
                  +LP      D+E+ F+  A         R   +   EF    + ++V   +  
Sbjct: 69  GHIDVADLLPESFDFDDMEDFFDTDAAEFDQGFDGRMYYQAPSEFGFGKNGEMVKKSSGN 128

Query: 134 WHKAQTGAEVPRYAQKAPKIVNVKV--SPRTIHQPR 141
               ++  E  +YA+K  K  N +V  +PR IHQPR
Sbjct: 129 -RSPRSIVEPAKYAEKPAKWGNQRVAAAPRNIHQPR 163

[Close]

BLAST of CmoCh04G030100 vs. Swiss-Prot
Match: CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.1e-10
Identity = 44/142 (30.99%), Postives = 72/142 (50.70%), Query Frame = 1


Query: 8   TSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQERFQDP---QNDF 67
           T    +S LNPNAP+F P+ +R VEDFS +WW+L+ +S WFR++WL    ++     +DF
Sbjct: 4   TIDRRLSTLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFLGGDDF 63

Query: 68  SFAE---NEEIVLPDLENIFEDFARQQEEEEFEFSKDLVPMGAFKWHKAQTGAEVPRYAQ 127
           S  E    E I   D  ++ +           +   ++      K ++++  +  P+Y Q
Sbjct: 64  SVMEEEFEEMIASSDGGSMADTVTEADVASYLKMLLNIAESTKEKIYRSKVSSCSPKYNQ 123

Query: 128 KAPKIVNVKVSPRT---IHQPR 141
           K  K +N   + R    I+QPR
Sbjct: 124 K--KYMNPNFNCRRNHHIYQPR 143

[Close]

BLAST of CmoCh04G030100 vs. TrEMBL
Match: A0A0A0KBP8_CUCSA (Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis sativus GN=Csa_6G013350 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 8.3e-66
Identity = 122/140 (87.14%), Postives = 130/140 (92.86%), Query Frame = 1


Query: 1   MDVVARRTSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQERFQDP 60
           MDVV +R SSSSVSMLNPNAPLFVPMAYRTVEDFSDQWW LIQSSPWFREYWLQERFQDP
Sbjct: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWELIQSSPWFREYWLQERFQDP 60

Query: 61  QNDFSFAENEEIVLPDLENIFEDFARQQEEEEFEFSKDLVPMGAFKWHKAQTGAEVPRYA 120
           QN+ SF ENEE +LPDLE+ F+DF RQQEEEE EFSKDLVPMGAFKW KA++GAEVP+YA
Sbjct: 61  QNELSFGENEEFILPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA 120

Query: 121 QKAPKIVNVKVSPRTIHQPR 141
           QKAPKIVNVKVSPRTIHQPR
Sbjct: 121 QKAPKIVNVKVSPRTIHQPR 140

[Close]

BLAST of CmoCh04G030100 vs. TrEMBL
Match: Q6ELF9_CUCSA (Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.0e-60
Identity = 114/132 (86.36%), Postives = 122/132 (92.42%), Query Frame = 1


Query: 1   MDVVARRTSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQERFQDP 60
           MDVV +R SSSSVSMLNPNAPLFVPMAYRTVEDFSDQWW LIQSSPWFREYWLQERFQDP
Sbjct: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWELIQSSPWFREYWLQERFQDP 60

Query: 61  QNDFSFAENEEIVLPDLENIFEDFARQQEEEEFEFSKDLVPMGAFKWHKAQTGAEVPRYA 120
           QN+ SF ENEE +LPDLE+ F+DF RQQEEEE EFSKDLVPMGAFKW KA++GAEVP+YA
Sbjct: 61  QNELSFGENEEFILPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA 120

Query: 121 QKAPKIVNVKVS 133
           QKAPKIVNVKVS
Sbjct: 121 QKAPKIVNVKVS 132

[Close]

BLAST of CmoCh04G030100 vs. TrEMBL
Match: V4SMQ7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033013mg PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.4e-42
Identity = 86/140 (61.43%), Postives = 110/140 (78.57%), Query Frame = 1


Query: 1   MDVVARRTSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQERFQDP 60
           M+V+++R+SSSS S LNPNAP+F+P AYR VEDFSD+WW LIQSSPWFR+YWLQE + DP
Sbjct: 5   MEVLSQRSSSSSTSTLNPNAPMFIPFAYRMVEDFSDEWWALIQSSPWFRDYWLQECYFDP 64

Query: 61  QNDFSFAENEEIVLPDLENIFEDFARQQEEEEFEFSKDLVPMGAFKWHKAQTGAEVPRYA 120
           Q+D  F++ +++VLPD++ IF D   Q+E EE +F KDLV +G  KW K     E  RY+
Sbjct: 65  QSDPLFSDFDDLVLPDVDEIFPD-KHQEEMEERDFCKDLVSLGTLKWKKGGAMIEKQRYS 124

Query: 121 QKAPKIVNVKVSPRTIHQPR 141
           +KAPKIV+VKVSPRTI QPR
Sbjct: 125 EKAPKIVSVKVSPRTIQQPR 143

[Close]

BLAST of CmoCh04G030100 vs. TrEMBL
Match: A0A067E1T5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032323mg PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 8.3e-42
Identity = 86/140 (61.43%), Postives = 110/140 (78.57%), Query Frame = 1


Query: 1   MDVVARRTSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQERFQDP 60
           M+V+++R+SSSS S LNPNAP+F+P AYR VEDFSD+WW LIQSSPWFR+YWLQE + DP
Sbjct: 5   MEVLSQRSSSSSTSTLNPNAPMFIPFAYRMVEDFSDEWWALIQSSPWFRDYWLQECYFDP 64

Query: 61  QNDFSFAENEEIVLPDLENIFEDFARQQEEEEFEFSKDLVPMGAFKWHKAQTGAEVPRYA 120
           Q+D  F++ +++VLPD++ IF D   Q+E EE +F KDLV +G  KW K     E  RY+
Sbjct: 65  QSDPLFSDFDDLVLPDVDEIFPD-KHQEEIEERDFCKDLVSLGTLKWKKGGAMIEKQRYS 124

Query: 121 QKAPKIVNVKVSPRTIHQPR 141
           +KAPKIV+VKVSPRTI QPR
Sbjct: 125 EKAPKIVSVKVSPRTIQQPR 143

[Close]

BLAST of CmoCh04G030100 vs. TrEMBL
Match: W9QXE6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012280 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.7e-40
Identity = 86/143 (60.14%), Postives = 109/143 (76.22%), Query Frame = 1


Query: 1   MDVVARRTSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQERFQDP 60
           MDV++ R+SSSS S LNPNAP+FVP+AYRTVEDFSD+WW L+QSSPWFR+YWLQER+ DP
Sbjct: 3   MDVISGRSSSSS-STLNPNAPMFVPLAYRTVEDFSDEWWALVQSSPWFRDYWLQERYCDP 62

Query: 61  QNDFSFAENEEIVLPDLENIFED---FARQQEEEEFEFSKDLVPMGAFKWHKAQTGAEVP 120
           Q D SF +  ++ L D+++ F+D     + +EE E ++SK LV +GA KW K +  AE P
Sbjct: 63  QTDPSFFDIYDLALLDVDSFFDDDVSSMKTEEEGERDYSKKLVRLGALKWRKGRALAEAP 122

Query: 121 RYAQKAPKIVNVKVSPRTIHQPR 141
           RY +K PKIV VK SPRTI QPR
Sbjct: 123 RYIEKVPKIVKVKPSPRTIQQPR 144

[Close]

BLAST of CmoCh04G030100 vs. TAIR10
Match: AT2G41430.1 (AT2G41430.1 dehydration-induced protein (ERD15))

HSP 1 Score: 70.9 bits (172), Expect = 7.2e-13
Identity = 51/156 (32.69%), Postives = 77/156 (49.36%), Query Frame = 1


Query: 14  SMLNPNAPLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQERFQDPQNDFSFAENEE-- 73
           S LNP+APLF+P A R VEDFS +WW L+ +S W+ +YW+ ++ Q     +   ENE   
Sbjct: 9   STLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYDNGENENGG 68

Query: 74  ------IVLP------DLENIFEDFA---------RQQEEEEFEF----SKDLVPMGAFK 133
                  +LP      D+E+ F+  A         R   +   EF    + ++V   +  
Sbjct: 69  GHIDVADLLPESFDFDDMEDFFDTDAAEFDQGFDGRMYYQAPSEFGFGKNGEMVKKSSGN 128

Query: 134 WHKAQTGAEVPRYAQKAPKIVNVKV--SPRTIHQPR 141
               ++  E  +YA+K  K  N +V  +PR IHQPR
Sbjct: 129 -RSPRSIVEPAKYAEKPAKWGNQRVAAAPRNIHQPR 163

[Close]

BLAST of CmoCh04G030100 vs. TAIR10
Match: AT4G14270.1 (AT4G14270.1 Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins.)

HSP 1 Score: 65.1 bits (157), Expect = 4.0e-11
Identity = 44/142 (30.99%), Postives = 72/142 (50.70%), Query Frame = 1


Query: 8   TSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQERFQDP---QNDF 67
           T    +S LNPNAP+F P+ +R VEDFS +WW+L+ +S WFR++WL    ++     +DF
Sbjct: 4   TIDRRLSTLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFLGGDDF 63

Query: 68  SFAE---NEEIVLPDLENIFEDFARQQEEEEFEFSKDLVPMGAFKWHKAQTGAEVPRYAQ 127
           S  E    E I   D  ++ +           +   ++      K ++++  +  P+Y Q
Sbjct: 64  SVMEEEFEEMIASSDGGSMADTVTEADVASYLKMLLNIAESTKEKIYRSKVSSCSPKYNQ 123

Query: 128 KAPKIVNVKVSPRT---IHQPR 141
           K  K +N   + R    I+QPR
Sbjct: 124 K--KYMNPNFNCRRNHHIYQPR 143

[Close]

BLAST of CmoCh04G030100 vs. NCBI nr
Match: gi|700190608|gb|KGN45812.1| (Poly(A)-binding protein C-terminal interacting protein 6 [Cucumis sativus])

HSP 1 Score: 257.7 bits (657), Expect = 1.2e-65
Identity = 122/140 (87.14%), Postives = 130/140 (92.86%), Query Frame = 1


Query: 1   MDVVARRTSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQERFQDP 60
           MDVV +R SSSSVSMLNPNAPLFVPMAYRTVEDFSDQWW LIQSSPWFREYWLQERFQDP
Sbjct: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWELIQSSPWFREYWLQERFQDP 60

Query: 61  QNDFSFAENEEIVLPDLENIFEDFARQQEEEEFEFSKDLVPMGAFKWHKAQTGAEVPRYA 120
           QN+ SF ENEE +LPDLE+ F+DF RQQEEEE EFSKDLVPMGAFKW KA++GAEVP+YA
Sbjct: 61  QNELSFGENEEFILPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA 120

Query: 121 QKAPKIVNVKVSPRTIHQPR 141
           QKAPKIVNVKVSPRTIHQPR
Sbjct: 121 QKAPKIVNVKVSPRTIHQPR 140

[Close]

BLAST of CmoCh04G030100 vs. NCBI nr
Match: gi|821595273|ref|NP_001295813.1| (protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 1.5e-60
Identity = 114/132 (86.36%), Postives = 122/132 (92.42%), Query Frame = 1


Query: 1   MDVVARRTSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQERFQDP 60
           MDVV +R SSSSVSMLNPNAPLFVPMAYRTVEDFSDQWW LIQSSPWFREYWLQERFQDP
Sbjct: 1   MDVVTQRNSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWELIQSSPWFREYWLQERFQDP 60

Query: 61  QNDFSFAENEEIVLPDLENIFEDFARQQEEEEFEFSKDLVPMGAFKWHKAQTGAEVPRYA 120
           QN+ SF ENEE +LPDLE+ F+DF RQQEEEE EFSKDLVPMGAFKW KA++GAEVP+YA
Sbjct: 61  QNELSFGENEEFILPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQKARSGAEVPKYA 120

Query: 121 QKAPKIVNVKVS 133
           QKAPKIVNVKVS
Sbjct: 121 QKAPKIVNVKVS 132

[Close]

BLAST of CmoCh04G030100 vs. NCBI nr
Match: gi|567886632|ref|XP_006435838.1| (hypothetical protein CICLE_v10033013mg [Citrus clementina])

HSP 1 Score: 178.3 bits (451), Expect = 9.1e-42
Identity = 86/140 (61.43%), Postives = 110/140 (78.57%), Query Frame = 1


Query: 1   MDVVARRTSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQERFQDP 60
           M+V+++R+SSSS S LNPNAP+F+P AYR VEDFSD+WW LIQSSPWFR+YWLQE + DP
Sbjct: 5   MEVLSQRSSSSSTSTLNPNAPMFIPFAYRMVEDFSDEWWALIQSSPWFRDYWLQECYFDP 64

Query: 61  QNDFSFAENEEIVLPDLENIFEDFARQQEEEEFEFSKDLVPMGAFKWHKAQTGAEVPRYA 120
           Q+D  F++ +++VLPD++ IF D   Q+E EE +F KDLV +G  KW K     E  RY+
Sbjct: 65  QSDPLFSDFDDLVLPDVDEIFPD-KHQEEMEERDFCKDLVSLGTLKWKKGGAMIEKQRYS 124

Query: 121 QKAPKIVNVKVSPRTIHQPR 141
           +KAPKIV+VKVSPRTI QPR
Sbjct: 125 EKAPKIVSVKVSPRTIQQPR 143

[Close]

BLAST of CmoCh04G030100 vs. NCBI nr
Match: gi|641825580|gb|KDO44846.1| (hypothetical protein CISIN_1g032323mg [Citrus sinensis])

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-41
Identity = 86/140 (61.43%), Postives = 110/140 (78.57%), Query Frame = 1


Query: 1   MDVVARRTSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQERFQDP 60
           M+V+++R+SSSS S LNPNAP+F+P AYR VEDFSD+WW LIQSSPWFR+YWLQE + DP
Sbjct: 5   MEVLSQRSSSSSTSTLNPNAPMFIPFAYRMVEDFSDEWWALIQSSPWFRDYWLQECYFDP 64

Query: 61  QNDFSFAENEEIVLPDLENIFEDFARQQEEEEFEFSKDLVPMGAFKWHKAQTGAEVPRYA 120
           Q+D  F++ +++VLPD++ IF D   Q+E EE +F KDLV +G  KW K     E  RY+
Sbjct: 65  QSDPLFSDFDDLVLPDVDEIFPD-KHQEEIEERDFCKDLVSLGTLKWKKGGAMIEKQRYS 124

Query: 121 QKAPKIVNVKVSPRTIHQPR 141
           +KAPKIV+VKVSPRTI QPR
Sbjct: 125 EKAPKIVSVKVSPRTIQQPR 143

[Close]

BLAST of CmoCh04G030100 vs. NCBI nr
Match: gi|1009121463|ref|XP_015877468.1| (PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Ziziphus jujuba])

HSP 1 Score: 177.6 bits (449), Expect = 1.6e-41
Identity = 88/140 (62.86%), Postives = 107/140 (76.43%), Query Frame = 1


Query: 1   MDVVARRTSSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWNLIQSSPWFREYWLQERFQDP 60
           MDV++ R SSS+   LNPNAP+FVP+AYRTVEDFSD+WW L+QSSPWFR+YWLQE F DP
Sbjct: 98  MDVISARMSSST---LNPNAPMFVPLAYRTVEDFSDEWWALVQSSPWFRDYWLQECFHDP 157

Query: 61  QNDFSFAENEEIVLPDLENIFEDFARQQEEEEFEFSKDLVPMGAFKWHKAQTGAEVPRYA 120
           Q+D SF +  + VLP+++ +F D     EE   + SK+LV MGA KW K +   EVPRY 
Sbjct: 158 QDDPSFVDIYDPVLPEIDALFHDADIINEEGGGDHSKELVSMGALKWRKGRALTEVPRYI 217

Query: 121 QKAPKIVNVKVSPRTIHQPR 141
           +KAPKIVNVKVSPRTI QPR
Sbjct: 218 EKAPKIVNVKVSPRTIQQPR 234

The following BLAST results are available for this feature:

BLAST of CmoCh04G030100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ERD15_ARATH	1.3e-11	32.69	Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana GN=ERD15 PE=1...	[more]
CID2_ARATH	7.1e-10	30.99	Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=C...	[more]

BLAST of CmoCh04G030100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBP8_CUCSA	8.3e-66	87.14	Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis sativus GN=C...	[more]
Q6ELF9_CUCSA	1.0e-60	86.36	Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis sativus PE=2...	[more]
V4SMQ7_9ROSI	6.4e-42	61.43	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033013mg PE=4 SV=1	[more]
A0A067E1T5_CITSI	8.3e-42	61.43	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032323mg PE=4 SV=1	[more]
W9QXE6_9ROSA	2.7e-40	60.14	Uncharacterized protein OS=Morus notabilis GN=L484_012280 PE=4 SV=1	[more]

BLAST of CmoCh04G030100 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41430.1	7.2e-13	32.69	dehydration-induced protein (ERD15)	[more]
AT4G14270.1	4.0e-11	30.99	Protein containing PAM2 motif which mediates interaction with the PA...	[more]

BLAST of CmoCh04G030100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190608\|gb\|KGN45812.1\|	1.2e-65	87.14	Poly(A)-binding protein C-terminal interacting protein 6 [Cucumis sativus]	[more]
gi\|821595273\|ref\|NP_001295813.1\|	1.5e-60	86.36	protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucumis sativus]	[more]
gi\|567886632\|ref\|XP_006435838.1\|	9.1e-42	61.43	hypothetical protein CICLE_v10033013mg [Citrus clementina]	[more]
gi\|641825580\|gb\|KDO44846.1\|	1.2e-41	61.43	hypothetical protein CISIN_1g032323mg [Citrus sinensis]	[more]
gi\|1009121463\|ref\|XP_015877468.1\|	1.6e-41	62.86	PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G030100.1	CmoCh04G030100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33790	FAMILY NOT NAMED	coord: 6..140 score: 1.8
None	No IPR available	PANTHER	PTHR33790:SF3	SUBFAMILY NOT NAMED	coord: 6..140 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G030100	Cucsa.136830	Cucumber (Gy14) v1	cgycmoB0371
CmoCh04G030100	CmaCh04G028850	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G030100	CmaCh15G001480	Cucurbita maxima (Rimu)	cmacmoB308
CmoCh04G030100	Cla006610	Watermelon (97103) v1	cmowmB731
CmoCh04G030100	Csa6G013350	Cucumber (Chinese Long) v2	cmocuB759
CmoCh04G030100	MELO3C019981	Melon (DHL92) v3.5.1	cmomeB668
CmoCh04G030100	ClCG11G005940	Watermelon (Charleston Gray)	cmowcgB621
CmoCh04G030100	CSPI06G01910	Wild cucumber (PI 183967)	cmocpiB768
CmoCh04G030100	Lsi03G002860	Bottle gourd (USVL1VR-Ls)	cmolsiB645
CmoCh04G030100	Cp4.1LG13g07330	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G030100	Cp4.1LG01g21820	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G030100	MELO3C019981.2	Melon (DHL92) v3.6.1	cmomedB756
CmoCh04G030100	CsaV3_6G002060	Cucumber (Chinese Long) v3	cmocucB0899
CmoCh04G030100	Cla97C11G212840	Watermelon (97103) v2	cmowmbB697
CmoCh04G030100	Bhi04G001863	Wax gourd	cmowgoB0857
CmoCh04G030100	Carg05958	Silver-seed gourd	carcmoB0033
CmoCh04G030100	Carg02140	Silver-seed gourd	carcmoB0370

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G030100	CmoCh15G001620	Cucurbita moschata (Rifu)	cmocmoB261

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G030100	Cucumber (Chinese Long) v3	cmocucB0838
CmoCh04G030100	Watermelon (97103) v2	cmowmbB723
CmoCh04G030100	Wax gourd	cmowgoB0879
CmoCh04G030100	Cucurbita moschata (Rifu)	cmocmoB449
CmoCh04G030100	Cucurbita moschata (Rifu)	cmocmoB466
CmoCh04G030100	Cucumber (Gy14) v1	cgycmoB0350
CmoCh04G030100	Cucurbita maxima (Rimu)	cmacmoB659
CmoCh04G030100	Cucurbita maxima (Rimu)	cmacmoB734
CmoCh04G030100	Cucurbita maxima (Rimu)	cmacmoB736
CmoCh04G030100	Wild cucumber (PI 183967)	cmocpiB719
CmoCh04G030100	Cucumber (Chinese Long) v2	cmocuB709
CmoCh04G030100	Melon (DHL92) v3.5.1	cmomeB662
CmoCh04G030100	Melon (DHL92) v3.5.1	cmomeB701
CmoCh04G030100	Watermelon (Charleston Gray)	cmowcgB650
CmoCh04G030100	Watermelon (97103) v1	cmowmB714
CmoCh04G030100	Cucurbita pepo (Zucchini)	cmocpeB654
CmoCh04G030100	Cucurbita pepo (Zucchini)	cmocpeB679
CmoCh04G030100	Bottle gourd (USVL1VR-Ls)	cmolsiB629
CmoCh04G030100	Cucumber (Gy14) v2	cgybcmoB525
CmoCh04G030100	Cucumber (Gy14) v2	cgybcmoB816
CmoCh04G030100	Melon (DHL92) v3.6.1	cmomedB795
CmoCh04G030100	Silver-seed gourd	carcmoB0754
CmoCh04G030100	Silver-seed gourd	carcmoB0925