Lsi02G014410 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATACATTGGTTTTGATTCCGATCAAGTCTCATCTCTCCGCTACTCTCTCCGCCTGTCTCTCTCCGGCTAAAATGGAGAAAAGTGAAGCAAATACGGCGGCGACCGCTGCTAGTCCGTGTGCGGCTTGCAAAATTCTCCGGCGGAGATGCCGAGAGAATTGCGAATTGGGGCCGTATTTTCCTCCAACGGAACCTCTCAAATTCACTATTGCTCATAAGGTCTTTGGTGCTAGCAACATCATCAAATTGCTTCAGGTAACTTCGATTCGTTTGATAACATTTTTGTTTCTCATTTATGGTTCCACGTTAAATAATTTCATATCTCTCGTATTATTTTTCAACATTTCATGTGTTTGCACGTGTATATGCAATTTCTTTTTTCTTTTAAGTAAATTTAAGGAAAACTACAAAAAAAAAAAAAAAAAATATATATATATATCAAACTATTTACAAAGTTTTAATATCTATCAGTAATAGACTGCGATAGAATTCTATTACTGAGCAATAAGTGACAGACCGCGATAGAATTCTATCACTTGAGCGATAGACTAATTATCGTTGTCTATTGCTTAGGCGATAGAATTTTATCGTAGTCTATTGTTGATAGTCAGTAAAATTTTTCGATATTTATAAATAATTTTGCTCACTTTTTTATATTTGAAAAAGTCCTAAATTTAATGATTTTATATACTTGGGAAGTGATAATGAAGTTTGAACATTTTTTATGATAAATTTATTTTTAAGTCAATCATTTTAGATATTTTGGGAGTGATAGTGAACTTTGAAGATTTTTTATGATATATTTATATTTATTTTTTAATGTTCAATATTTCACTTACTGAAAATGAGTTACACAATTTTAAAAATTATACCTAAATTTATGGAAGGGAGAACGATGGGAGTGTTTTCTTTGAAAATTAAACTCCTCTCCTACTTTAGAATAATTAAATTTTATTATTTAAATATATTGCTAAAAGTAATTATAAAAATTAGGTAAAAAAGAAAATGACAAAATGGAGAGAAGAAGTTCGTATTCGACTTCTATATTGCCTTTTATACAAAGATATCCGTGAGTGTCCCGATCAGCTTACGAGCACTTCGATTAATCTCTTTAATTCTATATCTTTCTTGTTATTAAATACACTCAAAAAATATGGATGCTTTTTTTACATCAAGATGCATGTTCAAATTTTTCACTCTCTTTTAATGATCGATCTTATTTTCAATTCTCTCTCGGTCTAGGATTATTGTTGGAAAACATTATTTCAACCTCCATTTTTCAATTTTAATTTCATCCTTTTATGTGTGGGTCCCTTTTTAATTAGGGGAAGTTTTAAAAATAGAAAAATAAGGAAAACTATTTACATAAAATAGCAAAATTTTTAAATAGTTTTGATAGACGCTGATAGAAGTCTATCACGATCTATAAGCGATAGAAATGATAGAAGTCTATCACGGATAGATGCTAATAGAAGTCTATCAATGTCTATCAATGTCTATCAGTATTTTTTTTGCTATTTTATGTAAATAGTTTGACATTTTTTTTATTTGTGAAAATTTCCCTTTTAATTATATAGAATTAAAAAGTGGAATAATGTGGGAATTTAAATGAGAGTATTATATTATACTATTAGATTCTCCCTTCCGCACGCATGCACGCGCACACACACGAGAAATTATTATAAACAAAAAAATATATCAAACTATATTTTTCTATATTTATATCGATAGAATTCAAGCTATCGTGGTCTATCACTGACAGAGAATAAAATTTTTTCTATATTTATAAATAGTTTTGCTCATTTTACTATATTTAAAAACCGTCCATATGTAATGTAATAAATTAATTTTTTTTTACAACTAAATAATGAACTATTAAAAGTTCAGTAAATTATTAAAGTTAGATATAGGAAGGTTTAGATTCTCAAGTTATGCGTGTGGATATGTCTTTGTCATAAAAGATGAAACTGAAAATTTTACAAGATTAGTCCTAAGATCATAATTTATTTAGTAATATTGTTGTTTTTAAAACTCATTATAATTATTTATTAGCTTCGAAACTTTATTATTAAAAAAACTTTTTACTAATCCTCATCTTTTGAAAAGACGATTAAGTATAAAACATATATTATTTTTTTAAAAAAAAAATGTCTTCATATTTTGAAAAAAACAAGAAAGTGCATTAAAATGCTAAAAAGAAAAACTGGCAGATCTGAATTTATGATCTTCCTAATATCTCGTATTATTGAATCTTTTAGGATCTTCCTAAGTCGCAAAGAGCTGATGCAGTGAACAGTATGGTATATGAGGCAAGTGCAAGAATAAGAGATCCGGTTTATGGATGTGCGGGCTCAATTTTCCAACTCCAAAAAGAAATAAATGACCTAAAAGCAGATTTAGCTAAAGCTCAAGCAGAGGTTCTCAAAATGCAATGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGTCTCAAATGCCACAACCACCAATAATAATGTATGATCATCAATCACTTAATGACAATTACAACATTGCTAGCCCTCAAACTTATCAAACCTATTCATACTTATTTGAGGACAGTAATATTTTGGAGCCTCTTTGGACTTAGATTACAATTAATGGTGGATTATTTGGTTTTTAATTTCAAAACTCAACAATAATGATAATAAATAGTATTTAGTTTAGTTTAGAATCAACGCTATAGATTGAGCGTTGAGATACATACTGCCTTTACAAAATTTCTTACTTTAATATATTTACAAGTGTCGAGATGCTTCAAATAGAAGCTCAACGCTACTCGCTTAGACATTTGACTTTAATAAACTTATTAGAACTTTTCGATACATCTCATTAGTTCTTTTTAATTTCTTTGAATTCTTGATTCATATCAGATGAATAGAAAAAATAGTCTGAAAAATCACAAAGGGCAACAATATTTTAGTTATAAAAGTAGCCTACAAATTGTACTATCAATTTCTACCTAAATCAATAAAATTATTAACTTCATGACACAAAAGTAGCAAACATTGATCCTCTGTTATGTGCATTTTATAGTGTTTTGGTTGGAAAAGTGATCAAAACTCAAATAATTATCTATTTTTTACATAGATTATAGTTTATTACAGACATAAGTTATGACATAAAAAAATAAATAAATAAACACACAAATTAAGGTGAATTAGAAACACAACATAAAATGTCGACACGTGCATAACTCAGCCCTTAATATATTTACTAATTTCCTTAATAG ATACATTGGTTTTGATTCCGATCAAGTCTCATCTCTCCGCTACTCTCTCCGCCTGTCTCTCTCCGGCTAAAATGGAGAAAAGTGAAGCAAATACGGCGGCGACCGCTGCTAGTCCGTGTGCGGCTTGCAAAATTCTCCGGCGGAGATGCCGAGAGAATTGCGAATTGGGGCCGTATTTTCCTCCAACGGAACCTCTCAAATTCACTATTGCTCATAAGGTCTTTGGTGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTAAGTCGCAAAGAGCTGATGCAGTGAACAGTATGGTATATGAGGCAAGTGCAAGAATAAGAGATCCGGTTTATGGATGTGCGGGCTCAATTTTCCAACTCCAAAAAGAAATAAATGACCTAAAAGCAGATTTAGCTAAAGCTCAAGCAGAGGTTCTCAAAATGCAATGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGTCTCAAATGCCACAACCACCAATAATAATGTATGATCATCAATCACTTAATGACAATTACAACATTGCTAGCCCTCAAACTTATCAAACCTATTCATACTTATTTGAGGACAGTAATATTTTGGAGCCTCTTTGGACTTAGATTACAATTAATGGTGGATTATTTGGTTTTTAATTTCAAAACTCAACAATAATGATAATAAATAGTATTTAGTTTAGTTTAGAATCAACGCTATAGATTGAGCGTTGAGATACATACTGCCTTTACAAAATTTCTTACTTTAATATATTTACAAGTGTCGAGATGCTTCAAATAGAAGCTCAACGCTACTCGCTTAGACATTTGACTTTAATAAACTTATTAGAACTTTTCGATACATCTCATTAGTTCTTTTTAATTTCTTTGAATTCTTGATTCATATCAGATGAATAGAAAAAATAGTCTGAAAAATCACAAAGGGCAACAATATTTTAGTTATAAAAGTAGCCTACAAATTGTACTATCAATTTCTACCTAAATCAATAAAATTATTAACTTCATGACACAAAAGTAGCAAACATTGATCCTCTGTTATGTGCATTTTATAGTGTTTTGGTTGGAAAAGTGATCAAAACTCAAATAATTATCTATTTTTTACATAGATTATAGTTTATTACAGACATAAGTTATGACATAAAAAAATAAATAAATAAACACACAAATTAAGGTGAATTAGAAACACAACATAAAATGTCGACACGTGCATAACTCAGCCCTTAATATATTTACTAATTTCCTTAATAG ATGGAGAAAAGTGAAGCAAATACGGCGGCGACCGCTGCTAGTCCGTGTGCGGCTTGCAAAATTCTCCGGCGGAGATGCCGAGAGAATTGCGAATTGGGGCCGTATTTTCCTCCAACGGAACCTCTCAAATTCACTATTGCTCATAAGGTCTTTGGTGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTAAGTCGCAAAGAGCTGATGCAGTGAACAGTATGGTATATGAGGCAAGTGCAAGAATAAGAGATCCGGTTTATGGATGTGCGGGCTCAATTTTCCAACTCCAAAAAGAAATAAATGACCTAAAAGCAGATTTAGCTAAAGCTCAAGCAGAGGTTCTCAAAATGCAATGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGTCTCAAATGCCACAACCACCAATAATAATGTATGATCATCAATCACTTAATGACAATTACAACATTGCTAGCCCTCAAACTTATCAAACCTATTCATACTTATTTGAGGACAGTAATATTTTGGAGCCTCTTTGGACTTAG MEKSEANTAATAASPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHKVFGASNIIKLLQDLPKSQRADAVNSMVYEASARIRDPVYGCAGSIFQLQKEINDLKADLAKAQAEVLKMQCQQANLMTLICKELSQMPQPPIIMYDHQSLNDNYNIASPQTYQTYSYLFEDSNILEPLWT
BLAST of Lsi02G014410 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 1.7e-45 Identity = 97/167 (58.08%), Postives = 118/167 (70.66%), Query Frame = 1
BLAST of Lsi02G014410 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2) HSP 1 Score: 176.4 bits (446), Expect = 2.8e-43 Identity = 96/179 (53.63%), Postives = 120/179 (67.04%), Query Frame = 1
BLAST of Lsi02G014410 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2) HSP 1 Score: 150.6 bits (379), Expect = 1.6e-35 Identity = 68/109 (62.39%), Postives = 88/109 (80.73%), Query Frame = 1
BLAST of Lsi02G014410 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 3.6e-35 Identity = 71/119 (59.66%), Postives = 93/119 (78.15%), Query Frame = 1
BLAST of Lsi02G014410 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2) HSP 1 Score: 142.9 bits (359), Expect = 3.4e-33 Identity = 67/123 (54.47%), Postives = 92/123 (74.80%), Query Frame = 1
BLAST of Lsi02G014410 vs. TrEMBL
Match: A0A0A0LUS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G088440 PE=4 SV=1) HSP 1 Score: 295.0 bits (754), Expect = 6.0e-77 Identity = 148/185 (80.00%), Postives = 165/185 (89.19%), Query Frame = 1
BLAST of Lsi02G014410 vs. TrEMBL
Match: B9SK21_RICCO (LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1399160 PE=4 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 8.4e-55 Identity = 115/174 (66.09%), Postives = 136/174 (78.16%), Query Frame = 1
BLAST of Lsi02G014410 vs. TrEMBL
Match: A0A061GTD1_THECC (LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_041094 PE=4 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 8.4e-55 Identity = 115/177 (64.97%), Postives = 137/177 (77.40%), Query Frame = 1
BLAST of Lsi02G014410 vs. TrEMBL
Match: A0A067LHN9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05582 PE=4 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 3.2e-54 Identity = 111/168 (66.07%), Postives = 137/168 (81.55%), Query Frame = 1
BLAST of Lsi02G014410 vs. TrEMBL
Match: A0A0D2LY54_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G129700 PE=4 SV=1) HSP 1 Score: 219.2 bits (557), Expect = 4.2e-54 Identity = 112/175 (64.00%), Postives = 135/175 (77.14%), Query Frame = 1
BLAST of Lsi02G014410 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1) HSP 1 Score: 183.7 bits (465), Expect = 9.8e-47 Identity = 97/167 (58.08%), Postives = 118/167 (70.66%), Query Frame = 1
BLAST of Lsi02G014410 vs. TAIR10
Match: AT2G28500.1 (AT2G28500.1 LOB domain-containing protein 11) HSP 1 Score: 176.4 bits (446), Expect = 1.6e-44 Identity = 96/179 (53.63%), Postives = 120/179 (67.04%), Query Frame = 1
BLAST of Lsi02G014410 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein) HSP 1 Score: 150.6 bits (379), Expect = 9.2e-37 Identity = 68/109 (62.39%), Postives = 88/109 (80.73%), Query Frame = 1
BLAST of Lsi02G014410 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4) HSP 1 Score: 149.4 bits (376), Expect = 2.0e-36 Identity = 71/119 (59.66%), Postives = 93/119 (78.15%), Query Frame = 1
BLAST of Lsi02G014410 vs. TAIR10
Match: AT2G40470.1 (AT2G40470.1 LOB domain-containing protein 15) HSP 1 Score: 142.9 bits (359), Expect = 1.9e-34 Identity = 67/123 (54.47%), Postives = 92/123 (74.80%), Query Frame = 1
BLAST of Lsi02G014410 vs. NCBI nr
Match: gi|449459128|ref|XP_004147298.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus]) HSP 1 Score: 295.0 bits (754), Expect = 8.6e-77 Identity = 148/185 (80.00%), Postives = 165/185 (89.19%), Query Frame = 1
BLAST of Lsi02G014410 vs. NCBI nr
Match: gi|659072136|ref|XP_008463578.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo]) HSP 1 Score: 284.6 bits (727), Expect = 1.2e-73 Identity = 143/185 (77.30%), Postives = 161/185 (87.03%), Query Frame = 1
BLAST of Lsi02G014410 vs. NCBI nr
Match: gi|659072131|ref|XP_008463550.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo]) HSP 1 Score: 248.8 bits (634), Expect = 7.0e-63 Identity = 120/174 (68.97%), Postives = 146/174 (83.91%), Query Frame = 1
BLAST of Lsi02G014410 vs. NCBI nr
Match: gi|449459130|ref|XP_004147299.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus]) HSP 1 Score: 235.7 bits (600), Expect = 6.2e-59 Identity = 115/175 (65.71%), Postives = 145/175 (82.86%), Query Frame = 1
BLAST of Lsi02G014410 vs. NCBI nr
Match: gi|720090050|ref|XP_010244970.1| (PREDICTED: LOB domain-containing protein 1-like [Nelumbo nucifera]) HSP 1 Score: 228.4 bits (581), Expect = 9.8e-57 Identity = 114/170 (67.06%), Postives = 136/170 (80.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|