Csa1G088440 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G088440
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionLOB domain-containing protein, putative; contains IPR004883 (Lateral organ boundaries, LOB)
LocationChr1 : 8314172 .. 8314857 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAAAGTGCAGAAACAAATACGGCGTCGACGGCGGTGGTGGTGGGTAGTTCTTCCCCATGTGCGGCTTGTAAAATTCTCCGGCGGAGATGCCGAGAGAATTGTGAATTAGGGCCCTATTTTCCTTCAATGGAACCTCTCAAATTCACTATCGCCCATAGAGTCTTTGGTGCTAGCAACATTATCAAGTTGCTTCAGGTAACCTTTTCTTTTTCCAACAAACCTTTCCTTTCTTTGGAAAAGATAAACATTCTTTACTAATCCTTAAAAAGGAAAATACATAACTAGAAGATCTTAGTTTATGATTCTTAACCTCATATTGAATTTGTTAGGATCTTCCTGAATCACAAAGAGGAGATGCTGTGAACAGTATGGTATACGAGGCAAGTGCAAGAATAAGAGATCCAATCTATGGATGCGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTACAAGGCGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGGAAGGAATTGGGTCAAGTGCCACAACCACCAATGCATGATCATCAATCACTTAACGACCCTTACAACATTGCTAGCCCTCAAAGTTATCACTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCATGTGGACTTGA

mRNA sequence

ATGGAGAAAAGTGCAGAAACAAATACGGCGTCGACGGCGGTGGTGGTGGGTAGTTCTTCCCCATGTGCGGCTTGTAAAATTCTCCGGCGGAGATGCCGAGAGAATTGTGAATTAGGGCCCTATTTTCCTTCAATGGAACCTCTCAAATTCACTATCGCCCATAGAGTCTTTGGTGCTAGCAACATTATCAAGTTGCTTCAGGATCTTCCTGAATCACAAAGAGGAGATGCTGTGAACAGTATGGTATACGAGGCAAGTGCAAGAATAAGAGATCCAATCTATGGATGCGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTACAAGGCGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGGAAGGAATTGGGTCAAGTGCCACAACCACCAATGCATGATCATCAATCACTTAACGACCCTTACAACATTGCTAGCCCTCAAAGTTATCACTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCATGTGGACTTGA

Coding sequence (CDS)

ATGGAGAAAAGTGCAGAAACAAATACGGCGTCGACGGCGGTGGTGGTGGGTAGTTCTTCCCCATGTGCGGCTTGTAAAATTCTCCGGCGGAGATGCCGAGAGAATTGTGAATTAGGGCCCTATTTTCCTTCAATGGAACCTCTCAAATTCACTATCGCCCATAGAGTCTTTGGTGCTAGCAACATTATCAAGTTGCTTCAGGATCTTCCTGAATCACAAAGAGGAGATGCTGTGAACAGTATGGTATACGAGGCAAGTGCAAGAATAAGAGATCCAATCTATGGATGCGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTACAAGGCGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGGAAGGAATTGGGTCAAGTGCCACAACCACCAATGCATGATCATCAATCACTTAACGACCCTTACAACATTGCTAGCCCTCAAAGTTATCACTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCATGTGGACTTGA

Protein sequence

MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT*
Homology
[Close]
BLAST of Csa1G088440 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.3e-47
Identity = 92/148 (62.16%), Postives = 111/148 (75.00%), Query Frame = 1 

Query: 1   MEKSAETNTASTAVVVGSSS------------PCAACKILRRRCRENCELGPYFPSMEPL 60
           ME  ++ + A+T ++  SSS            PCAACKILRRRC E C L PYFP  +P 
Sbjct: 1   MESKSDASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPA 60

Query: 61  KFTIAHRVFGASNIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQIN 120
           KFTIAHRVFGASNIIK LQ+LPESQR DAVNSMVYEA ARIRDP+YGCAG+I+HLQRQ++
Sbjct: 61  KFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVS 120

Query: 121 DLQGELAKAQAEVLRMHCQQANLMTLIW 137
           +LQ +LAKAQ E++ M  Q++NL+ LI+
Sbjct: 121 ELQAQLAKAQVEMVNMQFQRSNLLELIY 148

[Close]
BLAST of Csa1G088440 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 5.8e-44
Identity = 82/117 (70.09%), Postives = 98/117 (83.76%), Query Frame = 1 

Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           SPCAACKILRRRC + C L PYFP  +P KFTIAHRVFGASNIIK LQ+LPESQR DAVN
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 80  SMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIW 137
           SMVYEA AR+RDP+YGCAG+I+HLQRQ+++LQ +LAK Q E++ M  Q+++L+ LI+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELIY 170

[Close]
BLAST of Csa1G088440 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.8e-37
Identity = 79/167 (47.31%), Postives = 108/167 (64.67%), Query Frame = 1 

Query: 17  GSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGD 76
           G++SPCAACK+LRRRC ++C   PYFP+ EP KF   HRVFGASN+ K+LQ+LP  QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 77  AVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIW 136
           AV+SMVYEA+AR+RDP+YGC G+I  LQ+QI+ LQ +LA AQAEV+ +  +Q+      +
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQST----NF 128

Query: 137 KELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 184
              G  P  P       +   +    +   S+  + +E ++ E MW+
Sbjct: 129 PGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]
BLAST of Csa1G088440 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 146.7 bits (369), Expect = 2.4e-34
Identity = 66/109 (60.55%), Postives = 85/109 (77.98%), Query Frame = 1 

Query: 19  SSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAV 78
           SSPCA+CK+LRRRC ++C   PYFP  +P KF I H+VFGASN+ K+LQ+LP  QR DAV
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 79  NSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 128
           NS+V+EA+AR+RDP+YGC G+I +LQ Q++ LQ +LA AQAE+L +  Q
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]
BLAST of Csa1G088440 vs. Swiss-Prot
Match: LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2)

HSP 1 Score: 139.4 bits (350), Expect = 3.9e-32
Identity = 65/114 (57.02%), Postives = 78/114 (68.42%), Query Frame = 1 

Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           +PCAACK+LRRRC E C   PYF   EP KF   H+VFGASN+ K+L ++ ESQRGDA N
Sbjct: 51  TPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAAN 110

Query: 80  SMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMT 134
           S+VYEA+ R+RDPIYGC G+I  LQ  I  LQ EL   + E+LR   Q+A  +T
Sbjct: 111 SLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTIT 164

[Close]
BLAST of Csa1G088440 vs. TrEMBL
Match: A0A0A0LUS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G088440 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 3.2e-102
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 

Query: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60
           MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS
Sbjct: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60

Query: 61  NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120
           NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE
Sbjct: 61  NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120

Query: 121 VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180
           VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP
Sbjct: 121 VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180

Query: 181 MWT 184
           MWT
Sbjct: 181 MWT 183

[Close]
BLAST of Csa1G088440 vs. TrEMBL
Match: B9SK21_RICCO (LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1399160 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.8e-53
Identity = 110/167 (65.87%), Postives = 128/167 (76.65%), Query Frame = 1 

Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           SPCAACKILRRRC + C L PYFP  EP KFTIAHRVFGASNIIK LQ+LPESQR DAV+
Sbjct: 39  SPCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVS 98

Query: 80  SMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIWKEL 139
           SMVYEASARIRDP+YGCAG+I  LQ+Q+N+LQ +LAKAQAEV+ M CQQANLM LI+ E+
Sbjct: 99  SMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLMALIYMEM 158

Query: 140 GQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECN---VLEPMWT 184
            Q PQ      QS++D   I +PQSY S     +E N   + EP+WT
Sbjct: 159 AQSPQ--QSSEQSIDD--FITTPQSYQSNPCFLDESNLGTMWEPLWT 201

[Close]
BLAST of Csa1G088440 vs. TrEMBL
Match: A0A0D2LY54_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G129700 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.1e-53
Identity = 112/176 (63.64%), Postives = 133/176 (75.57%), Query Frame = 1 

Query: 11  STAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLP 70
           ST+VV+   SPCAACKILRRRC E C L PYFP  EP KFTIAHRVFGASNIIK LQ+LP
Sbjct: 112 STSVVI---SPCAACKILRRRCAEKCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQELP 171

Query: 71  ESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQAN 130
           ESQR DAV+SMVYEASARIRDP+YGC G+I  LQ+Q+N+LQ +LAKAQAEV+ M  QQAN
Sbjct: 172 ESQRADAVSSMVYEASARIRDPVYGCTGAICQLQKQVNELQAQLAKAQAEVVNMQLQQAN 231

Query: 131 LMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNV---LEPMWT 184
           L+ L+  E+ Q PQ   + HQ +ND +   SPQSYHS     ++ N+    EP+WT
Sbjct: 232 LVALLCMEVAQSPQ--QNPHQPIND-FLSNSPQSYHSNPSFLDDNNLGSSWEPLWT 281

[Close]
BLAST of Csa1G088440 vs. TrEMBL
Match: A0A067LHN9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05582 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.1e-52
Identity = 103/164 (62.80%), Postives = 126/164 (76.83%), Query Frame = 1 

Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           SPCAACKILRRRC + C L PYFP  EP KFTIAHRVFGASNIIK LQ+LPESQR DAV+
Sbjct: 45  SPCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVS 104

Query: 80  SMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIWKEL 139
           SMVYEASARIRDP+YGCAG+I HLQ+QI++LQ +LAKAQAE++ M CQQANL+ ++   +
Sbjct: 105 SMVYEASARIRDPVYGCAGAICHLQKQISELQAQLAKAQAELVNMQCQQANLVAILCNCM 164

Query: 140 GQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 184
                P     QS+++   I++PQSY S     +E N+ EP+WT
Sbjct: 165 EMAQSPQQSSEQSVDN--FISTPQSYQSNPCFIDESNLWEPLWT 206

[Close]
BLAST of Csa1G088440 vs. TrEMBL
Match: A0A061GTD1_THECC (LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_041094 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.6e-51
Identity = 112/181 (61.88%), Postives = 134/181 (74.03%), Query Frame = 1 

Query: 7   TNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLL 66
           T T++  VV+   SPCAACKILRRRC + C L PYFP  EP KFTIAHRVFGASNIIK L
Sbjct: 44  TTTSTPPVVI---SPCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFL 103

Query: 67  QDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHC 126
           Q+LPESQR DAV+SMVYEASARIRDP+YGCAG+I  LQ+Q+N+LQ +LAKAQAEV+ M  
Sbjct: 104 QELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVNMQL 163

Query: 127 QQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVL----EPMW 184
           QQANL+ L+  E+ Q PQP  +  QS++    I+SP SY S     E+ N L    EP+W
Sbjct: 164 QQANLVALLCVEMAQSPQP--NSQQSVDT--FISSPPSYQSNPGFLEDNNNLGSLWEPLW 217

[Close]
BLAST of Csa1G088440 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1)

HSP 1 Score: 189.5 bits (480), Expect = 1.8e-48
Identity = 92/148 (62.16%), Postives = 111/148 (75.00%), Query Frame = 1 

Query: 1   MEKSAETNTASTAVVVGSSS------------PCAACKILRRRCRENCELGPYFPSMEPL 60
           ME  ++ + A+T ++  SSS            PCAACKILRRRC E C L PYFP  +P 
Sbjct: 1   MESKSDASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPA 60

Query: 61  KFTIAHRVFGASNIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQIN 120
           KFTIAHRVFGASNIIK LQ+LPESQR DAVNSMVYEA ARIRDP+YGCAG+I+HLQRQ++
Sbjct: 61  KFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVS 120

Query: 121 DLQGELAKAQAEVLRMHCQQANLMTLIW 137
           +LQ +LAKAQ E++ M  Q++NL+ LI+
Sbjct: 121 ELQAQLAKAQVEMVNMQFQRSNLLELIY 148

[Close]
BLAST of Csa1G088440 vs. TAIR10
Match: AT2G28500.1 (AT2G28500.1 LOB domain-containing protein 11)

HSP 1 Score: 178.7 bits (452), Expect = 3.2e-45
Identity = 82/117 (70.09%), Postives = 98/117 (83.76%), Query Frame = 1 

Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           SPCAACKILRRRC + C L PYFP  +P KFTIAHRVFGASNIIK LQ+LPESQR DAVN
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 80  SMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIW 137
           SMVYEA AR+RDP+YGCAG+I+HLQRQ+++LQ +LAK Q E++ M  Q+++L+ LI+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELIY 170

[Close]
BLAST of Csa1G088440 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 157.1 bits (396), Expect = 1.0e-38
Identity = 79/167 (47.31%), Postives = 108/167 (64.67%), Query Frame = 1 

Query: 17  GSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGD 76
           G++SPCAACK+LRRRC ++C   PYFP+ EP KF   HRVFGASN+ K+LQ+LP  QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 77  AVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIW 136
           AV+SMVYEA+AR+RDP+YGC G+I  LQ+QI+ LQ +LA AQAEV+ +  +Q+      +
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQST----NF 128

Query: 137 KELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 184
              G  P  P       +   +    +   S+  + +E ++ E MW+
Sbjct: 129 PGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]
BLAST of Csa1G088440 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-35
Identity = 66/109 (60.55%), Postives = 85/109 (77.98%), Query Frame = 1 

Query: 19  SSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAV 78
           SSPCA+CK+LRRRC ++C   PYFP  +P KF I H+VFGASN+ K+LQ+LP  QR DAV
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 79  NSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 128
           NS+V+EA+AR+RDP+YGC G+I +LQ Q++ LQ +LA AQAE+L +  Q
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]
BLAST of Csa1G088440 vs. TAIR10
Match: AT2G30340.1 (AT2G30340.1 LOB domain-containing protein 13)

HSP 1 Score: 139.4 bits (350), Expect = 2.2e-33
Identity = 65/114 (57.02%), Postives = 78/114 (68.42%), Query Frame = 1 

Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           +PCAACK+LRRRC E C   PYF   EP KF   H+VFGASN+ K+L ++ ESQRGDA N
Sbjct: 51  TPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAAN 110

Query: 80  SMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMT 134
           S+VYEA+ R+RDPIYGC G+I  LQ  I  LQ EL   + E+LR   Q+A  +T
Sbjct: 111 SLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTIT 164

[Close]
BLAST of Csa1G088440 vs. NCBI nr
Match: gi|449459128|ref|XP_004147298.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 379.0 bits (972), Expect = 4.6e-102
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 

Query: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60
           MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS
Sbjct: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60

Query: 61  NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120
           NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE
Sbjct: 61  NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120

Query: 121 VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180
           VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP
Sbjct: 121 VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180

Query: 181 MWT 184
           MWT
Sbjct: 181 MWT 183

[Close]
BLAST of Csa1G088440 vs. NCBI nr
Match: gi|659072136|ref|XP_008463578.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 319.7 bits (818), Expect = 3.3e-84
Identity = 157/183 (85.79%), Postives = 166/183 (90.71%), Query Frame = 1 

Query: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60
           M+KS E NTAS  VV+GS+ PCAACKILRRRCRENCELGPYFP MEPLKFTIAHRVFGAS
Sbjct: 1   MKKSEEANTASAVVVMGSTQPCAACKILRRRCRENCELGPYFPPMEPLKFTIAHRVFGAS 60

Query: 61  NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120
           NIIKLLQ+LP+SQR DAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQ ELAKAQAE
Sbjct: 61  NIIKLLQNLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQIELAKAQAE 120

Query: 121 VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180
           VLRMHCQQANLMTLI KELGQ+P+PPMHDH      YNIASPQ Y+SYSYLFEE NVLEP
Sbjct: 121 VLRMHCQQANLMTLICKELGQMPEPPMHDH------YNIASPQGYYSYSYLFEESNVLEP 177

Query: 181 MWT 184
           +WT
Sbjct: 181 LWT 177

[Close]
BLAST of Csa1G088440 vs. NCBI nr
Match: gi|659072131|ref|XP_008463550.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 238.4 bits (607), Expect = 9.8e-60
Identity = 118/181 (65.19%), Postives = 141/181 (77.90%), Query Frame = 1 

Query: 9   TASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQD 68
           T    VVV   SPCAACKILRRRC E C L PYFP  +PLKFTIAHR+FGASNIIKLL D
Sbjct: 28  TVQAPVVV---SPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLD 87

Query: 69  LPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQ 128
           LP+SQR DAV+S+VYEASARIRDP+YGCAG+I  LQ+QIN+LQ ELAK QAE++ +HC Q
Sbjct: 88  LPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQ 147

Query: 129 ANLMTLIWKELGQVPQPPMH------DHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMW 184
            NL+ LI KEL Q P PPM       DH+SL++ +NIA+PQSY  Y+ LFE+ N+ +P+W
Sbjct: 148 TNLVALICKELAQTP-PPMSSLSLLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLW 204

[Close]
BLAST of Csa1G088440 vs. NCBI nr
Match: gi|449459130|ref|XP_004147299.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 2.3e-56
Identity = 114/182 (62.64%), Postives = 140/182 (76.92%), Query Frame = 1 

Query: 9   TASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQD 68
           T    VVV   +PCAACKILRRRC + C L PYFP  +PLKFTIAHR+FGASNIIKLL D
Sbjct: 31  TVQAHVVV---TPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLD 90

Query: 69  LPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQ 128
           LP+SQR DAV+S+VYEASARIRDP+YGCAG+I  LQ+QIN+LQ ELAK QAE++ +HC Q
Sbjct: 91  LPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQ 150

Query: 129 ANLMTLIWKELGQVPQPPMH------DHQSLNDPYNI-ASPQSYHSYSYLFEECNVLEPM 184
            NL+ LI KEL Q P PPM       +H+SL++ +NI A+PQSY  Y+ LF + N+ +P+
Sbjct: 151 TNLVALICKELAQTP-PPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPL 208

[Close]
BLAST of Csa1G088440 vs. NCBI nr
Match: gi|255570775|ref|XP_002526340.1| (PREDICTED: LOB domain-containing protein 1 [Ricinus communis])

HSP 1 Score: 216.5 bits (550), Expect = 4.0e-53
Identity = 110/167 (65.87%), Postives = 128/167 (76.65%), Query Frame = 1 

Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           SPCAACKILRRRC + C L PYFP  EP KFTIAHRVFGASNIIK LQ+LPESQR DAV+
Sbjct: 39  SPCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVS 98

Query: 80  SMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIWKEL 139
           SMVYEASARIRDP+YGCAG+I  LQ+Q+N+LQ +LAKAQAEV+ M CQQANLM LI+ E+
Sbjct: 99  SMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLMALIYMEM 158

Query: 140 GQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECN---VLEPMWT 184
            Q PQ      QS++D   I +PQSY S     +E N   + EP+WT
Sbjct: 159 AQSPQ--QSSEQSIDD--FITTPQSYQSNPCFLDESNLGTMWEPLWT 201

The following BLAST results are available for this feature:
BLAST of Csa1G088440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LBD1_ARATH3.3e-4762.16LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1[more]
LBD11_ARATH5.8e-4470.09LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2[more]
LBD4_ARATH1.8e-3747.31LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1[more]
LBD12_ARATH2.4e-3460.55LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2[more]
LBD13_ARATH3.9e-3257.02LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2[more]
BLAST of Csa1G088440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUS4_CUCSA3.2e-102100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G088440 PE=4 SV=1[more]
B9SK21_RICCO2.8e-5365.87LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1399160 PE=4... [more]
A0A0D2LY54_GOSRA8.1e-5363.64Uncharacterized protein OS=Gossypium raimondii GN=B456_001G129700 PE=4 SV=1[more]
A0A067LHN9_JATCU3.1e-5262.80Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05582 PE=4 SV=1[more]
A0A061GTD1_THECC2.6e-5161.88LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_041094 PE=4 SV=1[more]
BLAST of Csa1G088440 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07900.11.8e-4862.16 LOB domain-containing protein 1[more]
AT2G28500.13.2e-4570.09 LOB domain-containing protein 11[more]
AT1G31320.11.0e-3847.31 LOB domain-containing protein 4[more]
AT2G30130.11.4e-3560.55 Lateral organ boundaries (LOB) domain family protein[more]
AT2G30340.12.2e-3357.02 LOB domain-containing protein 13[more]
BLAST of Csa1G088440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459128|ref|XP_004147298.1|4.6e-102100.00PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus][more]
gi|659072136|ref|XP_008463578.1|3.3e-8485.79PREDICTED: LOB domain-containing protein 1-like [Cucumis melo][more]
gi|659072131|ref|XP_008463550.1|9.8e-6065.19PREDICTED: LOB domain-containing protein 1-like [Cucumis melo][more]
gi|449459130|ref|XP_004147299.1|2.3e-5662.64PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus][more]
gi|255570775|ref|XP_002526340.1|4.0e-5365.87PREDICTED: LOB domain-containing protein 1 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016874 ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G088440.1Csa1G088440.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 21..118
score: 4.7
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 20..121
score: 25
NoneNo IPR availableunknownCoilCoilcoord: 100..127
scor
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 1..155
score: 6.9
NoneNo IPR availablePANTHERPTHR31301:SF14LOB DOMAIN-CONTAINING PROTEIN 1-RELATEDcoord: 1..155
score: 6.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G088440Cla005052Watermelon (97103) v1cuwmB010
Csa1G088440MELO3C005013Melon (DHL92) v3.5.1cumeB015
Csa1G088440ClCG03G002360Watermelon (Charleston Gray)cuwcgB037
Csa1G088440Lsi02G014410Bottle gourd (USVL1VR-Ls)culsiB024
Csa1G088440MELO3C005013.2Melon (DHL92) v3.6.1cumedB010
Csa1G088440Cla97C03G053390Watermelon (97103) v2cuwmbB034
Csa1G088440Bhi08G000253Wax gourdcuwgoB049
Csa1G088440Bhi08G000291Wax gourdcuwgoB037
Csa1G088440CSPI01G12870Wild cucumber (PI 183967)cpicuB000
Csa1G088440Cucsa.207390Cucumber (Gy14) v1cgycuB314
Csa1G088440CmaCh13G001950Cucurbita maxima (Rimu)cmacuB203
Csa1G088440CmaCh01G005340Cucurbita maxima (Rimu)cmacuB431
Csa1G088440CmoCh01G005640Cucurbita moschata (Rifu)cmocuB421
Csa1G088440CmoCh13G001960Cucurbita moschata (Rifu)cmocuB188
Csa1G088440CsGy1G012950Cucumber (Gy14) v2cgybcuB001
Csa1G088440Carg21071Silver-seed gourdcarcuB0745
Csa1G088440Carg12308Silver-seed gourdcarcuB0472
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G088440Melon (DHL92) v3.6.1cumedB008
Csa1G088440Watermelon (97103) v2cuwmbB028
Csa1G088440Wax gourdcuwgoB019
Csa1G088440Cucumber (Chinese Long) v2cucuB041
Csa1G088440Cucurbita maxima (Rimu)cmacuB581
Csa1G088440Cucurbita moschata (Rifu)cmocuB570
Csa1G088440Melon (DHL92) v3.5.1cumeB012
Csa1G088440Watermelon (Charleston Gray)cuwcgB033
Csa1G088440Watermelon (97103) v1cuwmB070
Csa1G088440Cucurbita pepo (Zucchini)cpecuB516
Csa1G088440Cucurbita pepo (Zucchini)cpecuB528
Csa1G088440Bottle gourd (USVL1VR-Ls)culsiB002