Carg21071 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21071
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	LOB domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_122 : 786140 .. 787450 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTGCTTCACAACCAATCCCATATCTCTGTCTTCTTTCTCTCTCTACTGAGTCTAAAATGGACGCAAAATCCAGCCCAACTTCAACCATCTTCCGTTCTCAGTCGCCGTCGTCGTCCCCATTACCGCCGCCGCAGAGTGTTCAGGCCGGCTTGGTGGCCAGTCCGTGTGCTGCGTGCAAGACTCTGAGGCGGAGATGCACAGAGAAATGCGTATTGGCGCCCTATTTCCCTCCCTCTGATCCTCTCAAGTTTACCATTGCTCACCGTATCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGTACCTCACCAGCCCCTAATTTCCTCATTTTCTCGAGTTTTCGTGTTATCACTCTGTTCTTTGTTGTTGAAATTGTGAAATTCGATGTGGAAATTGAAAATCGTTCTTGGAATCGTTACGAAATCGTTGAATTACCGAGCGATTTTAGGGAAGGAAAAAAATACTGTTGACAGGAATAGTTTGGTCAATGCGTATGCGTTCCGAGCAAAAGAACAAAATGGAATTAGTAGTGAAATTGATCTTCCCTTTCCTTTCTATATAATCGAGCGAATCATAATCGAGTAGAACTGTGTGTTTGTGGAGGCGGCTTAGTGCCGTACGTGACTTGGTGTACAGGCAATGAACATAGTTAGGGCTCACATATACAACGATGTCCCTATTTTGCCTGTAAATCTGAAAAATTACGCAATCCAAATCTGTAACGATGTTCATATTTTGCTTGTAAATCTGAAAAATTACGCAATCCAAATCTGTTTGTTTGTTTGTGTTGGCTCAATGGCCATGTGGAGCAATTATAATCAAACAATCAAACAAAGCAGCTCTTCTGTTTGATTTTTGTCCTCAAAGAACAGCCAATCATATAACAATCTGTTCTTCCACAATTCAAATCACCACAAACCAAACACTTCCTGATATCAATCACCTTATTGAATTCTTCAGGATCTTCCTGAATCACAGAGAATTGATGCAGTGAGTAGCTTGGTATACGAAGCAAGCGCAAGAATCAGAGATCCAGTATATGGATGTGCAGGGGCCATTTCCCAGCTCCAAAAACAAATAAACGAACTGCAAGCAGAGCTAGCCAAAACACAGGCTGAGCTTCTCAACATCCACAGCCACCAAACAAATTTGGTGGCTCTAATTTGCAAGGAACTAGCTCAAACACCGCCACCGGTGTCGCCCCTGGACCACCACACACTCGACAACAATCTCAACACTGCCACTCCTCAGAGCTACACAAATTTGTTTGAAGATAGCAGCATTTGGGAGCCTCTTTGGACATGA

mRNA sequence

AATTTTGCTTCACAACCAATCCCATATCTCTGTCTTCTTTCTCTCTCTACTGAGTCTAAAATGGACGCAAAATCCAGCCCAACTTCAACCATCTTCCGTTCTCAGTCGCCGTCGTCGTCCCCATTACCGCCGCCGCAGAGTGTTCAGGCCGGCTTGGTGGCCAGTCCGTGTGCTGCGTGCAAGACTCTGAGGCGGAGATGCACAGAGAAATGCGTATTGGCGCCCTATTTCCCTCCCTCTGATCCTCTCAAGTTTACCATTGCTCACCGTATCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGAATCACAGAGAATTGATGCAGTGAGTAGCTTGGTATACGAAGCAAGCGCAAGAATCAGAGATCCAGTATATGGATGTGCAGGGGCCATTTCCCAGCTCCAAAAACAAATAAACGAACTGCAAGCAGAGCTAGCCAAAACACAGGCTGAGCTTCTCAACATCCACAGCCACCAAACAAATTTGGTGGCTCTAATTTGCAAGGAACTAGCTCAAACACCGCCACCGGTGTCGCCCCTGGACCACCACACACTCGACAACAATCTCAACACTGCCACTCCTCAGAGCTACACAAATTTGTTTGAAGATAGCAGCATTTGGGAGCCTCTTTGGACATGA

Coding sequence (CDS)

AATTTTGCTTCACAACCAATCCCATATCTCTGTCTTCTTTCTCTCTCTACTGAGTCTAAAATGGACGCAAAATCCAGCCCAACTTCAACCATCTTCCGTTCTCAGTCGCCGTCGTCGTCCCCATTACCGCCGCCGCAGAGTGTTCAGGCCGGCTTGGTGGCCAGTCCGTGTGCTGCGTGCAAGACTCTGAGGCGGAGATGCACAGAGAAATGCGTATTGGCGCCCTATTTCCCTCCCTCTGATCCTCTCAAGTTTACCATTGCTCACCGTATCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGAATCACAGAGAATTGATGCAGTGAGTAGCTTGGTATACGAAGCAAGCGCAAGAATCAGAGATCCAGTATATGGATGTGCAGGGGCCATTTCCCAGCTCCAAAAACAAATAAACGAACTGCAAGCAGAGCTAGCCAAAACACAGGCTGAGCTTCTCAACATCCACAGCCACCAAACAAATTTGGTGGCTCTAATTTGCAAGGAACTAGCTCAAACACCGCCACCGGTGTCGCCCCTGGACCACCACACACTCGACAACAATCTCAACACTGCCACTCCTCAGAGCTACACAAATTTGTTTGAAGATAGCAGCATTTGGGAGCCTCTTTGGACATGA

Protein sequence

NFASQPIPYLCLLSLSTESKMDAKSSPTSTIFRSQSPSSSPLPPPQSVQAGLVASPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQKQINELQAELAKTQAELLNIHSHQTNLVALICKELAQTPPPVSPLDHHTLDNNLNTATPQSYTNLFEDSSIWEPLWT

Homology

[Close]

BLAST of Carg21071 vs. NCBI nr
Match: XP_022964984.1 (LOB domain-containing protein 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 347.4 bits (890), Expect = 3.4e-92
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 21  MDAKSSPTSTIFRSQSPSSSPLPPPQSVQAGLVASPCAACKTLRRRCTEKCVLAPYFPPS 80
           MDAKSSPTSTIFRSQSPSSSPLPPPQSVQAGLVASPCAACKTLRRRCTEKCVLAPYFPPS
Sbjct: 1   MDAKSSPTSTIFRSQSPSSSPLPPPQSVQAGLVASPCAACKTLRRRCTEKCVLAPYFPPS 60

Query: 81  DPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQK 140
           DPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQK
Sbjct: 61  DPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQK 120

Query: 141 QXXXXXXXXXXXXXXXXXXXXHQTNLVALICKELAQTPPPVSPLDHHTLDNNLNTATPQS 200
           QXXXXXXXXXXXXXXXXXXXXHQTNLVALICKELAQTPPPVSPLDHHTLDNNLNTATPQS
Sbjct: 121 QXXXXXXXXXXXXXXXXXXXXHQTNLVALICKELAQTPPPVSPLDHHTLDNNLNTATPQS 180

Query: 201 YTNLFEDSSIWEPLWT 217
           YTNLFEDSSIWEPLWT
Sbjct: 181 YTNLFEDSSIWEPLWT 196

[Close]

BLAST of Carg21071 vs. NCBI nr
Match: XP_022964985.1 (LOB domain-containing protein 11-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 328.6 bits (841), Expect = 1.6e-86
Identity = 190/196 (96.94%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 21  MDAKSSPTSTIFRSQSPSSSPLPPPQSVQAGLVASPCAACKTLRRRCTEKCVLAPYFPPS 80
           MDAKSSPTSTIFRSQSPSSSPLPPPQSVQAGLVASPCAACKTLRRRCTEKCVLAPYFPPS
Sbjct: 1   MDAKSSPTSTIFRSQSPSSSPLPPPQSVQAGLVASPCAACKTLRRRCTEKCVLAPYFPPS 60

Query: 81  DPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQK 140
           DPLKFTIAHRIFGASNIIKLL      QRIDAVSSLVYEASARIRDPVYGCAGAISQLQK
Sbjct: 61  DPLKFTIAHRIFGASNIIKLL------QRIDAVSSLVYEASARIRDPVYGCAGAISQLQK 120

Query: 141 QXXXXXXXXXXXXXXXXXXXXHQTNLVALICKELAQTPPPVSPLDHHTLDNNLNTATPQS 200
           QXXXXXXXXXXXXXXXXXXXXHQTNLVALICKELAQTPPPVSPLDHHTLDNNLNTATPQS
Sbjct: 121 QXXXXXXXXXXXXXXXXXXXXHQTNLVALICKELAQTPPPVSPLDHHTLDNNLNTATPQS 180

Query: 201 YTNLFEDSSIWEPLWT 217
           YTNLFEDSSIWEPLWT
Sbjct: 181 YTNLFEDSSIWEPLWT 190

[Close]

BLAST of Carg21071 vs. NCBI nr
Match: XP_022970428.1 (LOB domain-containing protein 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 325.9 bits (834), Expect = 1.1e-85
Identity = 187/196 (95.41%), Postives = 187/196 (95.41%), Query Frame = 0


Query: 21  MDAKSSPTSTIFRSQSPSSSPLPPPQSVQAGLVASPCAACKTLRRRCTEKCVLAPYFPPS 80
           MDAKSSPTSTIFRSQSPSSSPLPPP SVQAGLV SPCAACKTLRRRCTEKCVLAPYFPPS
Sbjct: 1   MDAKSSPTSTIFRSQSPSSSPLPPPPSVQAGLVVSPCAACKTLRRRCTEKCVLAPYFPPS 60

Query: 81  DPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQK 140
           DPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQK
Sbjct: 61  DPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQK 120

Query: 141 QXXXXXXXXXXXXXXXXXXXXHQTNLVALICKELAQTPPPVSPLDHHTLDNNLNTATPQS 200
           QXXXXXXXXXXXXXXXXXXXX    LVALICKELAQTPPPVSP DHH LDNNLNTA PQS
Sbjct: 121 QXXXXXXXXXXXXXXXXXXXXXXXXLVALICKELAQTPPPVSPPDHHALDNNLNTAIPQS 180

Query: 201 YTNLFEDSSIWEPLWT 217
           YTNLFEDSSIWEPLWT
Sbjct: 181 YTNLFEDSSIWEPLWT 196

[Close]

BLAST of Carg21071 vs. NCBI nr
Match: XP_022970429.1 (LOB domain-containing protein 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 307.0 bits (785), Expect = 5.1e-80
Identity = 181/196 (92.35%), Postives = 181/196 (92.35%), Query Frame = 0


Query: 21  MDAKSSPTSTIFRSQSPSSSPLPPPQSVQAGLVASPCAACKTLRRRCTEKCVLAPYFPPS 80
           MDAKSSPTSTIFRSQSPSSSPLPPP SVQAGLV SPCAACKTLRRRCTEKCVLAPYFPPS
Sbjct: 1   MDAKSSPTSTIFRSQSPSSSPLPPPPSVQAGLVVSPCAACKTLRRRCTEKCVLAPYFPPS 60

Query: 81  DPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQK 140
           DPLKFTIAHRIFGASNIIKLL      QRIDAVSSLVYEASARIRDPVYGCAGAISQLQK
Sbjct: 61  DPLKFTIAHRIFGASNIIKLL------QRIDAVSSLVYEASARIRDPVYGCAGAISQLQK 120

Query: 141 QXXXXXXXXXXXXXXXXXXXXHQTNLVALICKELAQTPPPVSPLDHHTLDNNLNTATPQS 200
           QXXXXXXXXXXXXXXXXXXXX    LVALICKELAQTPPPVSP DHH LDNNLNTA PQS
Sbjct: 121 QXXXXXXXXXXXXXXXXXXXXXXXXLVALICKELAQTPPPVSPPDHHALDNNLNTAIPQS 180

Query: 201 YTNLFEDSSIWEPLWT 217
           YTNLFEDSSIWEPLWT
Sbjct: 181 YTNLFEDSSIWEPLWT 190

[Close]

BLAST of Carg21071 vs. NCBI nr
Match: XP_023525656.1 (LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.1 bits (749), Expect = 7.6e-76
Identity = 154/197 (78.17%), Postives = 159/197 (80.71%), Query Frame = 0


Query: 21  MDAKSSPTSTIFRSQSPSSSPLPPPQSVQAGLVASPCAACKTLRRRCTEKCVLAPYFPPS 80
           MDAKSSPTS IFRSQSPSSSPLPPP SVQAGLV SPCAACKTLRRRCTEKCVLAPYFPPS
Sbjct: 1   MDAKSSPTSNIFRSQSPSSSPLPPPPSVQAGLVVSPCAACKTLRRRCTEKCVLAPYFPPS 60

Query: 81  DPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQK 140
           DPLKFTIAHRIFGASNIIKLLQDLPESQR DAVSSLVYEASARIRDPVYGCAGAI  LQK
Sbjct: 61  DPLKFTIAHRIFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQK 120

Query: 141 QXXXXXXXXXXXXXXXXXXXXHQTNLVALICKELAQTPPPV-SPLDHHTLDNNLNTATPQ 200
           Q                    HQ NLVALICKEL QTP P   P DH +LDNN ++ATPQ
Sbjct: 121 QINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSSATPQ 180

Query: 201 SYTNLFEDSSIWEPLWT 217
           SY  LF+DS+IWE LWT
Sbjct: 181 SYP-LFDDSNIWEALWT 196

[Close]

BLAST of Carg21071 vs. TAIR10
Match: AT1G07900.1 (LOB domain-containing protein 1)

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-38
Identity = 106/165 (64.24%), Postives = 120/165 (72.73%), Query Frame = 0


Query: 52  LVASPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRID 111
           +V SPCAACK LRRRC E+CVLAPYFPP+DP KFTIAHR+FGASNIIK LQ+LPESQR D
Sbjct: 29  VVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTD 88

Query: 112 AVSSLVYEASARIRDPVYGCAGAISQLQKQXXXXXXXXXXXXXXXXXXXXHQTNLVALIC 171
           AV+S+VYEA ARIRDPVYGCAGAI  LQ+ XXXXXXXXXXXXXXXXXXXX    L+ LI 
Sbjct: 89  AVNSMVYEAEARIRDPVYGCAGAIYHLQRXXXXXXXXXXXXXXXXXXXXXXXXXLLELIY 148

Query: 172 KELAQTPPPVSPLDHHTLDNNLNTATPQSYTNLFEDSSIWEPLWT 217
               Q       +   +  N+L     +S TN       W+PLWT
Sbjct: 149 NMDQQQKQEQDNMSFES--NDLGFLEDKSNTN--SSMLWWDPLWT 189

[Close]

BLAST of Carg21071 vs. TAIR10
Match: AT2G28500.1 (LOB domain-containing protein 11)

HSP 1 Score: 154.8 bits (390), Expect = 5.9e-38
Identity = 71/87 (81.61%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 55  SPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVS 114
           SPCAACK LRRRC +KCVLAPYFPP+DP KFTIAHR+FGASNIIK LQ+LPESQR DAV+
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 115 SLVYEASARIRDPVYGCAGAISQLQKQ 142
           S+VYEA AR+RDPVYGCAGAI  LQ+Q
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQ 140

[Close]

BLAST of Carg21071 vs. TAIR10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-32
Identity = 60/88 (68.18%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 54  ASPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRIDAV 113
           +SPCA+CK LRRRC + C+ APYFPP DP KF I H++FGASN+ K+LQ+LP  QR DAV
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 114 SSLVYEASARIRDPVYGCAGAISQLQKQ 142
           +SLV+EA+AR+RDPVYGC GAIS LQ Q
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQ 93

[Close]

BLAST of Carg21071 vs. TAIR10
Match: AT1G31320.1 (LOB domain-containing protein 4)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-31
Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 54  ASPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRIDAV 113
           ASPCAACK LRRRC + CV +PYFP  +P KF   HR+FGASN+ K+LQ+LP  QR DAV
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 114 SSLVYEASARIRDPVYGCAGAISQLQKQ 142
           SS+VYEA+AR+RDPVYGC GAIS LQ+Q
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQ 98

[Close]

BLAST of Carg21071 vs. TAIR10
Match: AT2G23660.1 (LOB domain-containing protein 10)

HSP 1 Score: 131.7 bits (330), Expect = 5.3e-31
Identity = 57/89 (64.04%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 52  LVASPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRID 111
           + ++PCAACK LRR+CT++CV APYFPP++P KF   HR+FGASN+ K+L DLP  QR D
Sbjct: 1   MASTPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQRED 60

Query: 112 AVSSLVYEASARIRDPVYGCAGAISQLQK 141
            V+SL YEA ARIRDP+YGC G IS LQ+
Sbjct: 61  TVNSLFYEAEARIRDPIYGCVGLISFLQQ 89

[Close]

BLAST of Carg21071 vs. Swiss-Prot
Match: sp|Q9LQR0|LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.8e-37
Identity = 106/165 (64.24%), Postives = 120/165 (72.73%), Query Frame = 0


Query: 52  LVASPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRID 111
           +V SPCAACK LRRRC E+CVLAPYFPP+DP KFTIAHR+FGASNIIK LQ+LPESQR D
Sbjct: 29  VVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTD 88

Query: 112 AVSSLVYEASARIRDPVYGCAGAISQLQKQXXXXXXXXXXXXXXXXXXXXHQTNLVALIC 171
           AV+S+VYEA ARIRDPVYGCAGAI  LQ+ XXXXXXXXXXXXXXXXXXXX    L+ LI 
Sbjct: 89  AVNSMVYEAEARIRDPVYGCAGAIYHLQRXXXXXXXXXXXXXXXXXXXXXXXXXLLELIY 148

Query: 172 KELAQTPPPVSPLDHHTLDNNLNTATPQSYTNLFEDSSIWEPLWT 217
               Q       +   +  N+L     +S TN       W+PLWT
Sbjct: 149 NMDQQQKQEQDNMSFES--NDLGFLEDKSNTN--SSMLWWDPLWT 189

[Close]

BLAST of Carg21071 vs. Swiss-Prot
Match: sp|Q9SK08|LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-36
Identity = 71/87 (81.61%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 55  SPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVS 114
           SPCAACK LRRRC +KCVLAPYFPP+DP KFTIAHR+FGASNIIK LQ+LPESQR DAV+
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 115 SLVYEASARIRDPVYGCAGAISQLQKQ 142
           S+VYEA AR+RDPVYGCAGAI  LQ+Q
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQ 140

[Close]

BLAST of Carg21071 vs. Swiss-Prot
Match: sp|Q8LBW3|LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 2.3e-31
Identity = 60/88 (68.18%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 54  ASPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRIDAV 113
           +SPCA+CK LRRRC + C+ APYFPP DP KF I H++FGASN+ K+LQ+LP  QR DAV
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 114 SSLVYEASARIRDPVYGCAGAISQLQKQ 142
           +SLV+EA+AR+RDPVYGC GAIS LQ Q
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQ 93

[Close]

BLAST of Carg21071 vs. Swiss-Prot
Match: sp|Q9SHE9|LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.9e-30
Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 54  ASPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRIDAV 113
           ASPCAACK LRRRC + CV +PYFP  +P KF   HR+FGASN+ K+LQ+LP  QR DAV
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 114 SSLVYEASARIRDPVYGCAGAISQLQKQ 142
           SS+VYEA+AR+RDPVYGC GAIS LQ+Q
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQ 98

[Close]

BLAST of Carg21071 vs. Swiss-Prot
Match: sp|O64836|LBD10_ARATH (LOB domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=LBD10 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.6e-30
Identity = 57/89 (64.04%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 52  LVASPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRID 111
           + ++PCAACK LRR+CT++CV APYFPP++P KF   HR+FGASN+ K+L DLP  QR D
Sbjct: 1   MASTPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQRED 60

Query: 112 AVSSLVYEASARIRDPVYGCAGAISQLQK 141
            V+SL YEA ARIRDP+YGC G IS LQ+
Sbjct: 61  TVNSLFYEAEARIRDPIYGCVGLISFLQQ 89

[Close]

BLAST of Carg21071 vs. TrEMBL
Match: tr|A0A1S3CK12|A0A1S3CK12_CUCME (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.3e-63
Identity = 153/202 (75.74%), Postives = 162/202 (80.20%), Query Frame = 0


Query: 22  DAKSSPTSTIFRSQSPSSSPLPPPQSVQAGLVASPCAACKTLRRRCTEKCVLAPYFPPSD 81
           + KSSPTST+                 QA +V SPCAACK LRRRC EKCVLAPYFPPSD
Sbjct: 5   EVKSSPTSTLL--XXXXXXXXXXXXXXQAPVVVSPCAACKILRRRCAEKCVLAPYFPPSD 64

Query: 82  PLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQKQ 141
           PLKFTIAHRIFGASNIIKLL DLP+SQR DAVSSLVYEASARIRDPVYGCAGAI QLQKQ
Sbjct: 65  PLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQ 124

Query: 142 XXXXXXXXXXXXXXXXXXXXHQTNLVALICKELAQTPPPVSPL----DHHTLDNNLNTAT 201
             XXXXXXXXXXXXXXXX  HQTNLVALICKELAQTPPP+S L    DH +LDNN N AT
Sbjct: 125 INXXXXXXXXXXXXXXXXHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFNIAT 184

Query: 202 PQS---YTNLFEDSSIWEPLWT 217
           PQS   YT+LFEDS+IW+PLWT
Sbjct: 185 PQSYQGYTSLFEDSNIWDPLWT 204

[Close]

BLAST of Carg21071 vs. TrEMBL
Match: tr|A0A0A0LS55|A0A0A0LS55_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G088450 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.6e-50
Identity = 127/157 (80.89%), Postives = 135/157 (85.99%), Query Frame = 0


Query: 68  TEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDP 127
           T KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLL DLP+SQR DAVSSLVYEASARIRDP
Sbjct: 9   TMKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP 68

Query: 128 VYGCAGAISQLQKQXXXXXXXXXXXXXXXXXXXXHQTNLVALICKELAQTPPPVSPL--- 187
           VYGCAGAI QLQKQ  XXXXXXXXXXXXXXXX  HQTNLVALICKELAQTPPP+S     
Sbjct: 69  VYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICKELAQTPPPMSSSSLL 128

Query: 188 -DHHTLDNNLN-TATPQS---YTNLFEDSSIWEPLWT 217
            +H +LDN+ N  ATPQS   YT+LF DS+IW+PLWT
Sbjct: 129 PEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 165

[Close]

BLAST of Carg21071 vs. TrEMBL
Match: tr|K7M386|K7M386_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100819336 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46
Identity = 123/200 (61.50%), Postives = 145/200 (72.50%), Query Frame = 0


Query: 26  SPTSTIFRSQSPSSSPLPPPQSVQAGLVASPCAACKTLRRRCTEKCVLAPYFPPSDPLKF 85
           S T+T F S S +++P  PPQ VQ  +V  PCAACK LRRRC EKCVLAPYFPP++P KF
Sbjct: 3   SDTNTTF-SHSSNTTPSSPPQQVQ--VVMIPCAACKILRRRCAEKCVLAPYFPPTEPAKF 62

Query: 86  TIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQKQXXXX 145
           T AHR+FGASNIIK LQ+LPESQR DAV+S+VYEA ARIRDPVYGCAGAI  LQKQ    
Sbjct: 63  TTAHRVFGASNIIKFLQELPESQRADAVASMVYEAGARIRDPVYGCAGAICHLQKQVNEL 122

Query: 146 XXXXXXXXXXXXXXXXHQTNLVALICKELAQTPPPVSPLDHHTLDNNLNTATP----QSY 205
            XXXXXXXXXXXXX   Q NLVALIC E+AQT  P       ++DN +++ +     Q+ 
Sbjct: 123 QXXXXXXXXXXXXXQFQQANLVALICMEMAQTQTP-QESPQQSVDNFISSPSHSSGYQNN 182

Query: 206 TNLFED-----SSIWEPLWT 217
            N FE+     +S+WEPLWT
Sbjct: 183 LNFFEENTNNLNSLWEPLWT 198

[Close]

BLAST of Carg21071 vs. TrEMBL
Match: tr|A0A1Q3B2A5|A0A1Q3B2A5_CEPFO (DUF260 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_05614 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46
Identity = 117/166 (70.48%), Postives = 131/166 (78.92%), Query Frame = 0


Query: 55  SPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVS 114
           SPCAACK LRRRC +KCVLAPYFPP++P KFTIAHR+FGASNIIK LQ+LPESQR DAVS
Sbjct: 45  SPCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVS 104

Query: 115 SLVYEASARIRDPVYGCAGAISQLQKQXXXXXXXXXXXXXXXXXXXXHQTNLVALICKEL 174
           S+VYEASARIRDPVYGCAGAI QLQKQ   XXXXXXXXXXXXXXXXX QTNLVAL+C E+
Sbjct: 105 SMVYEASARIRDPVYGCAGAICQLQKQVNEXXXXXXXXXXXXXXXXXQQTNLVALLCMEM 164

Query: 175 AQTPPPVSPLDHHTLDNNLNTATPQSYTNLFED----SSIWEPLWT 217
           AQ+P P+      ++DN +        T  F D     S+WEPLWT
Sbjct: 165 AQSPQPIY---QQSVDNIITNPPSYHSTPCFIDDNNMGSLWEPLWT 207

[Close]

BLAST of Carg21071 vs. TrEMBL
Match: tr|A0A0J8DZV5|A0A0J8DZV5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_9g225500 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.4e-46
Identity = 122/192 (63.54%), Postives = 137/192 (71.35%), Query Frame = 0


Query: 34  SQSPSSSPLPPPQSVQAGLVASPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFG 93
           S S SS  +PPPQS    +V SPCAACK LRRRC +KCVLAPYFPP+DPLKF+IAHR+FG
Sbjct: 10  SPSSSSCEVPPPQSHATAVVVSPCAACKILRRRCADKCVLAPYFPPTDPLKFSIAHRVFG 69

Query: 94  ASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQKQXXXXXXXXXXXX 153
           ASNIIK LQ+LPESQR DAVSS+VYEA+AR+RDPVYGCAGAI QLQ Q    XXXXXXXX
Sbjct: 70  ASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGCAGAICQLQTQVNDLXXXXXXXX 129

Query: 154 XXXXXXXXHQTNLVALICKELA----QTPP-----PVSPLDHHTLDNNLNTATPQSYTNL 213
           XXXXXX   Q NL+ALIC E+A    +TPP       S    H      N A      NL
Sbjct: 130 XXXXXXKCQQANLLALICMEMAHQHDETPPSNTSQSQSQSPEHPNSGLSNIACFIDDNNL 189

Query: 214 FEDSSIWEPLWT 217
             + S+WEPLWT
Sbjct: 190 --EGSLWEPLWT 199

The following BLAST results are available for this feature:

BLAST of Carg21071 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964984.1	3.4e-92	100.00	LOB domain-containing protein 1-like isoform X1 [Cucurbita moschata]	[more]
XP_022964985.1	1.6e-86	96.94	LOB domain-containing protein 11-like isoform X2 [Cucurbita moschata]	[more]
XP_022970428.1	1.1e-85	95.41	LOB domain-containing protein 1-like isoform X1 [Cucurbita maxima]	[more]
XP_022970429.1	5.1e-80	92.35	LOB domain-containing protein 1-like isoform X2 [Cucurbita maxima]	[more]
XP_023525656.1	7.6e-76	78.17	LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg21071 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07900.1	1.5e-38	64.24	LOB domain-containing protein 1	[more]
AT2G28500.1	5.9e-38	81.61	LOB domain-containing protein 11	[more]
AT2G30130.1	1.3e-32	68.18	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	1.1e-31	69.32	LOB domain-containing protein 4	[more]
AT2G23660.1	5.3e-31	64.04	LOB domain-containing protein 10	[more]

BLAST of Carg21071 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LQR0\|LBD1_ARATH	2.8e-37	64.24	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
sp\|Q9SK08\|LBD11_ARATH	1.1e-36	81.61	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
sp\|Q8LBW3\|LBD12_ARATH	2.3e-31	68.18	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
sp\|Q9SHE9\|LBD4_ARATH	1.9e-30	69.32	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
sp\|O64836\|LBD10_ARATH	9.6e-30	64.04	LOB domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=LBD10 PE=2 S...	[more]

BLAST of Carg21071 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CK12\|A0A1S3CK12_CUCME	1.3e-63	75.74	LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=...	[more]
tr\|A0A0A0LS55\|A0A0A0LS55_CUCSA	1.6e-50	80.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G088450 PE=4 SV=1	[more]
tr\|K7M386\|K7M386_SOYBN	1.9e-46	61.50	Uncharacterized protein OS=Glycine max OX=3847 GN=100819336 PE=4 SV=1	[more]
tr\|A0A1Q3B2A5\|A0A1Q3B2A5_CEPFO	1.9e-46	70.48	DUF260 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_0...	[more]
tr\|A0A0J8DZV5\|A0A0J8DZV5_BETVU	5.4e-46	63.54	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_9g22550...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21071-RA	Carg21071-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 135..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..47
None	No IPR available	PANTHER	PTHR31301:SF6	LOB DOMAIN-CONTAINING PROTEIN 1-RELATED	coord: 30..216
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 30..216
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 56..153 e-value: 7.1E-41 score: 138.7
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 55..156 score: 26.889

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21071	Cla005052	Watermelon (97103) v1	carwmB0725
Carg21071	Csa1G088440	Cucumber (Chinese Long) v2	carcuB0745
Carg21071	MELO3C005013	Melon (DHL92) v3.5.1	carmeB0722
Carg21071	ClCG03G002360	Watermelon (Charleston Gray)	carwcgB0704
Carg21071	CSPI01G12870	Wild cucumber (PI 183967)	carcpiB0761
Carg21071	Cucsa.207390	Cucumber (Gy14) v1	carcgyB0818
Carg21071	CmaCh01G005340	Cucurbita maxima (Rimu)	carcmaB1018
Carg21071	CmaCh13G001950	Cucurbita maxima (Rimu)	carcmaB1017
Carg21071	CmoCh01G005640	Cucurbita moschata (Rifu)	carcmoB0990
Carg21071	CmoCh13G001960	Cucurbita moschata (Rifu)	carcmoB0989
Carg21071	Lsi02G014410	Bottle gourd (USVL1VR-Ls)	carlsiB666
Carg21071	Cp4.1LG20g09100	Cucurbita pepo (Zucchini)	carcpeB1022
Carg21071	Cp4.1LG02g12790	Cucurbita pepo (Zucchini)	carcpeB1023
Carg21071	CsGy1G012950	Cucumber (Gy14) v2	carcgybB0723
Carg21071	MELO3C005013.2	Melon (DHL92) v3.6.1	carmedB0734
Carg21071	CsaV3_1G013040	Cucumber (Chinese Long) v3	carcucB0764
Carg21071	Cla97C03G053390	Watermelon (97103) v2	carwmbB0761
Carg21071	Bhi08G000291	Wax gourd	carwgoB0857
Carg21071	Bhi08G000253	Wax gourd	carwgoB0860

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg21071	Carg12308	Silver-seed gourd	carcarB447

The following block(s) are covering this gene:

None