CSPI01G12870 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G12870
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	LOB domain-containing protein, putative
Location	Chr1 : 8382707 .. 8383475 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAAGTGCAGAAACAAATACGGCGTCGACGGCGGTGGTGGTGGTGGGTAGTTCTTCCCCATGTGCGGCTTGTAAAATTCTCCGGCGGAGATGCCGAGAGAATTGTGAATTAGGGCCCTATTTTCCTTCAATGGAACCTCTCAAATTCACTATCGCCCATAGAGTCTTTGGTGCTAGCAACATTATCAAGTTGCTTCAGGTAACCTTTTCTTTTTCCAACAAACCTTTCCTTTCTTTGGAAAAGATAAACATTCTTTACTAATCCTTAAAATGGAAAATACATAACTAGAAGATCTTAGTTTATGATTCTTAACCTCATATTGAATTTGTTAGGATCTTCCTGAATCACAAAGAGGAGATGCTGTGAACAGTATGGTATACGAGGCAAGTACAAGAATAAGAGATCCAATCTATGGATGTGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTACAAGGCGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGGTCAAATGCCACAACCACCAATGCATGATCATCAATCACTTAACGACCCTTACAACATTGCTAGCCCTCAAAGTTATCACTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCATGTGGACTTGAAATAGTATTTAATCTAGTTTAGAATCAACGATGTAGATTAGACATTGAGACATTACCTTCAAAAGATTTCGTACTTAAAT

mRNA sequence

ATGGAGAAAAGTGCAGAAACAAATACGGCGTCGACGGCGGTGGTGGTGGTGGGTAGTTCTTCCCCATGTGCGGCTTGTAAAATTCTCCGGCGGAGATGCCGAGAGAATTGTGAATTAGGGCCCTATTTTCCTTCAATGGAACCTCTCAAATTCACTATCGCCCATAGAGTCTTTGGTGCTAGCAACATTATCAAGTTGCTTCAGGATCTTCCTGAATCACAAAGAGGAGATGCTGTGAACAGTATGGTATACGAGGCAAGTACAAGAATAAGAGATCCAATCTATGGATGTGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTACAAGGCGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGGTCAAATGCCACAACCACCAATGCATGATCATCAATCACTTAACGACCCTTACAACATTGCTAGCCCTCAAAGTTATCACTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCATGTGGACTTGA

Coding sequence (CDS)

ATGGAGAAAAGTGCAGAAACAAATACGGCGTCGACGGCGGTGGTGGTGGTGGGTAGTTCTTCCCCATGTGCGGCTTGTAAAATTCTCCGGCGGAGATGCCGAGAGAATTGTGAATTAGGGCCCTATTTTCCTTCAATGGAACCTCTCAAATTCACTATCGCCCATAGAGTCTTTGGTGCTAGCAACATTATCAAGTTGCTTCAGGATCTTCCTGAATCACAAAGAGGAGATGCTGTGAACAGTATGGTATACGAGGCAAGTACAAGAATAAGAGATCCAATCTATGGATGTGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTACAAGGCGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGGTCAAATGCCACAACCACCAATGCATGATCATCAATCACTTAACGACCCTTACAACATTGCTAGCCCTCAAAGTTATCACTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCATGTGGACTTGA

Homology

[Close]

BLAST of CSPI01G12870 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.1e-46
Identity = 91/147 (61.90%), Postives = 111/147 (75.51%), Query Frame = 1


Query: 1   MEKSAETNTASTAVVVVGSS-----------SPCAACKILRRRCRENCELGPYFPSMEPL 60
           ME  ++ + A+T ++   SS           SPCAACKILRRRC E C L PYFP  +P 
Sbjct: 1   MESKSDASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPA 60

Query: 61  KFTIAHRVFGASNIIKLLQDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQIN 120
           KFTIAHRVFGASNIIK LQ+LPESQR DAVNSMVYEA  RIRDP+YGCAG+I+HLQRQ++
Sbjct: 61  KFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVS 120

Query: 121 DLQGELAKAQAEVLRMHCQQANLMTLI 137
           +LQ +LAKAQ E++ M  Q++NL+ LI
Sbjct: 121 ELQAQLAKAQVEMVNMQFQRSNLLELI 147

[Close]

BLAST of CSPI01G12870 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 5.8e-44
Identity = 81/116 (69.83%), Postives = 98/116 (84.48%), Query Frame = 1


Query: 21  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 80
           SPCAACKILRRRC + C L PYFP  +P KFTIAHRVFGASNIIK LQ+LPESQR DAVN
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 81  SMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLI 137
           SMVYEA  R+RDP+YGCAG+I+HLQRQ+++LQ +LAK Q E++ M  Q+++L+ LI
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI 169

[Close]

BLAST of CSPI01G12870 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.0e-37
Identity = 78/167 (46.71%), Postives = 108/167 (64.67%), Query Frame = 1


Query: 18  GSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGD 77
           G++SPCAACK+LRRRC ++C   PYFP+ EP KF   HRVFGASN+ K+LQ+LP  QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 78  AVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIC 137
           AV+SMVYEA+ R+RDP+YGC G+I  LQ+QI+ LQ +LA AQAEV+ +  +Q+       
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNF---- 128

Query: 138 KELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 185
              G  P  P       +   +    +   S+  + +E ++ E MW+
Sbjct: 129 PGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of CSPI01G12870 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-34
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = 1


Query: 20  SSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAV 79
           SSPCA+CK+LRRRC ++C   PYFP  +P KF I H+VFGASN+ K+LQ+LP  QR DAV
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 80  NSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 129
           NS+V+EA+ R+RDP+YGC G+I +LQ Q++ LQ +LA AQAE+L +  Q
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]

BLAST of CSPI01G12870 vs. Swiss-Prot
Match: LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 7.8e-33
Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 1


Query: 21  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 80
           +PCAACK+LRRRC E C   PYF   EP KF   H+VFGASN+ K+L ++ ESQRGDA N
Sbjct: 51  TPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAAN 110

Query: 81  SMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMT 135
           S+VYEA+ R+RDPIYGC G+I  LQ  I  LQ EL   + E+LR   Q+A  +T
Sbjct: 111 SLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTIT 164

[Close]

BLAST of CSPI01G12870 vs. TrEMBL
Match: A0A0A0LUS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G088440 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 2.2e-98
Identity = 180/184 (97.83%), Postives = 181/184 (98.37%), Query Frame = 1


Query: 1   MEKSAETNTASTAVVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGA 60
           MEKSAETNTASTA VVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGA
Sbjct: 1   MEKSAETNTASTA-VVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGA 60

Query: 61  SNIIKLLQDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQA 120
           SNIIKLLQDLPESQRGDAVNSMVYEAS RIRDPIYGCAGSIFHLQRQINDLQGELAKAQA
Sbjct: 61  SNIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQA 120

Query: 121 EVLRMHCQQANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLE 180
           EVLRMHCQQANLMTLI KELGQ+PQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLE
Sbjct: 121 EVLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLE 180

Query: 181 PMWT 185
           PMWT
Sbjct: 181 PMWT 183

[Close]

BLAST of CSPI01G12870 vs. TrEMBL
Match: A0A0D2LY54_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G129700 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.6e-54
Identity = 112/177 (63.28%), Postives = 133/177 (75.14%), Query Frame = 1


Query: 11  STAVVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDL 70
           ST+VV+    SPCAACKILRRRC E C L PYFP  EP KFTIAHRVFGASNIIK LQ+L
Sbjct: 112 STSVVI----SPCAACKILRRRCAEKCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQEL 171

Query: 71  PESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQA 130
           PESQR DAV+SMVYEAS RIRDP+YGC G+I  LQ+Q+N+LQ +LAKAQAEV+ M  QQA
Sbjct: 172 PESQRADAVSSMVYEASARIRDPVYGCTGAICQLQKQVNELQAQLAKAQAEVVNMQLQQA 231

Query: 131 NLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNV---LEPMWT 185
           NL+ L+C E+ Q PQ   + HQ +ND +   SPQSYHS     ++ N+    EP+WT
Sbjct: 232 NLVALLCMEVAQSPQ--QNPHQPIND-FLSNSPQSYHSNPSFLDDNNLGSSWEPLWT 281

[Close]

BLAST of CSPI01G12870 vs. TrEMBL
Match: A0A067LHN9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05582 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.1e-53
Identity = 103/164 (62.80%), Postives = 126/164 (76.83%), Query Frame = 1


Query: 21  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 80
           SPCAACKILRRRC + C L PYFP  EP KFTIAHRVFGASNIIK LQ+LPESQR DAV+
Sbjct: 45  SPCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVS 104

Query: 81  SMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLICKEL 140
           SMVYEAS RIRDP+YGCAG+I HLQ+QI++LQ +LAKAQAE++ M CQQANL+ ++C  +
Sbjct: 105 SMVYEASARIRDPVYGCAGAICHLQKQISELQAQLAKAQAELVNMQCQQANLVAILCNCM 164

Query: 141 GQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 185
                P     QS+++   I++PQSY S     +E N+ EP+WT
Sbjct: 165 EMAQSPQQSSEQSVDN--FISTPQSYQSNPCFIDESNLWEPLWT 206

[Close]

BLAST of CSPI01G12870 vs. TrEMBL
Match: B9SK21_RICCO (LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1399160 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.8e-53
Identity = 109/167 (65.27%), Postives = 126/167 (75.45%), Query Frame = 1


Query: 21  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 80
           SPCAACKILRRRC + C L PYFP  EP KFTIAHRVFGASNIIK LQ+LPESQR DAV+
Sbjct: 39  SPCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVS 98

Query: 81  SMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLICKEL 140
           SMVYEAS RIRDP+YGCAG+I  LQ+Q+N+LQ +LAKAQAEV+ M CQQANLM LI  E+
Sbjct: 99  SMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLMALIYMEM 158

Query: 141 GQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECN---VLEPMWT 185
            Q PQ      QS++D   I +PQSY S     +E N   + EP+WT
Sbjct: 159 AQSPQ--QSSEQSIDD--FITTPQSYQSNPCFLDESNLGTMWEPLWT 201

[Close]

BLAST of CSPI01G12870 vs. TrEMBL
Match: A0A061GTD1_THECC (LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_041094 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.8e-52
Identity = 113/180 (62.78%), Postives = 133/180 (73.89%), Query Frame = 1


Query: 9   TASTAVVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQ 68
           T ST  VV+   SPCAACKILRRRC + C L PYFP  EP KFTIAHRVFGASNIIK LQ
Sbjct: 45  TTSTPPVVI---SPCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQ 104

Query: 69  DLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 128
           +LPESQR DAV+SMVYEAS RIRDP+YGCAG+I  LQ+Q+N+LQ +LAKAQAEV+ M  Q
Sbjct: 105 ELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVNMQLQ 164

Query: 129 QANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVL----EPMWT 185
           QANL+ L+C E+ Q PQP  +  QS++    I+SP SY S     E+ N L    EP+WT
Sbjct: 165 QANLVALLCVEMAQSPQP--NSQQSVDT--FISSPPSYQSNPGFLEDNNNLGSLWEPLWT 217

[Close]

BLAST of CSPI01G12870 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1)

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-47
Identity = 91/147 (61.90%), Postives = 111/147 (75.51%), Query Frame = 1


Query: 1   MEKSAETNTASTAVVVVGSS-----------SPCAACKILRRRCRENCELGPYFPSMEPL 60
           ME  ++ + A+T ++   SS           SPCAACKILRRRC E C L PYFP  +P 
Sbjct: 1   MESKSDASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPA 60

Query: 61  KFTIAHRVFGASNIIKLLQDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQIN 120
           KFTIAHRVFGASNIIK LQ+LPESQR DAVNSMVYEA  RIRDP+YGCAG+I+HLQRQ++
Sbjct: 61  KFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVS 120

Query: 121 DLQGELAKAQAEVLRMHCQQANLMTLI 137
           +LQ +LAKAQ E++ M  Q++NL+ LI
Sbjct: 121 ELQAQLAKAQVEMVNMQFQRSNLLELI 147

[Close]

BLAST of CSPI01G12870 vs. TAIR10
Match: AT2G28500.1 (AT2G28500.1 LOB domain-containing protein 11)

HSP 1 Score: 178.7 bits (452), Expect = 3.3e-45
Identity = 81/116 (69.83%), Postives = 98/116 (84.48%), Query Frame = 1


Query: 21  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 80
           SPCAACKILRRRC + C L PYFP  +P KFTIAHRVFGASNIIK LQ+LPESQR DAVN
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 81  SMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLI 137
           SMVYEA  R+RDP+YGCAG+I+HLQRQ+++LQ +LAK Q E++ M  Q+++L+ LI
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI 169

[Close]

BLAST of CSPI01G12870 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 156.0 bits (393), Expect = 2.3e-38
Identity = 78/167 (46.71%), Postives = 108/167 (64.67%), Query Frame = 1


Query: 18  GSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGD 77
           G++SPCAACK+LRRRC ++C   PYFP+ EP KF   HRVFGASN+ K+LQ+LP  QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 78  AVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIC 137
           AV+SMVYEA+ R+RDP+YGC G+I  LQ+QI+ LQ +LA AQAEV+ +  +Q+       
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNF---- 128

Query: 138 KELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 185
              G  P  P       +   +    +   S+  + +E ++ E MW+
Sbjct: 129 PGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of CSPI01G12870 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 147.5 bits (371), Expect = 8.0e-36
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = 1


Query: 20  SSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAV 79
           SSPCA+CK+LRRRC ++C   PYFP  +P KF I H+VFGASN+ K+LQ+LP  QR DAV
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 80  NSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 129
           NS+V+EA+ R+RDP+YGC G+I +LQ Q++ LQ +LA AQAE+L +  Q
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]

BLAST of CSPI01G12870 vs. TAIR10
Match: AT2G30340.1 (AT2G30340.1 LOB domain-containing protein 13)

HSP 1 Score: 141.7 bits (356), Expect = 4.4e-34
Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 1


Query: 21  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 80
           +PCAACK+LRRRC E C   PYF   EP KF   H+VFGASN+ K+L ++ ESQRGDA N
Sbjct: 51  TPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAAN 110

Query: 81  SMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMT 135
           S+VYEA+ R+RDPIYGC G+I  LQ  I  LQ EL   + E+LR   Q+A  +T
Sbjct: 111 SLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTIT 164

[Close]

BLAST of CSPI01G12870 vs. NCBI nr
Match: gi|449459128|ref|XP_004147298.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 366.3 bits (939), Expect = 3.1e-98
Identity = 180/184 (97.83%), Postives = 181/184 (98.37%), Query Frame = 1


Query: 1   MEKSAETNTASTAVVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGA 60
           MEKSAETNTASTA VVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGA
Sbjct: 1   MEKSAETNTASTA-VVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGA 60

Query: 61  SNIIKLLQDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQA 120
           SNIIKLLQDLPESQRGDAVNSMVYEAS RIRDPIYGCAGSIFHLQRQINDLQGELAKAQA
Sbjct: 61  SNIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQA 120

Query: 121 EVLRMHCQQANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLE 180
           EVLRMHCQQANLMTLI KELGQ+PQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLE
Sbjct: 121 EVLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLE 180

Query: 181 PMWT 185
           PMWT
Sbjct: 181 PMWT 183

[Close]

BLAST of CSPI01G12870 vs. NCBI nr
Match: gi|659072136|ref|XP_008463578.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 322.4 bits (825), Expect = 5.2e-85
Identity = 160/184 (86.96%), Postives = 168/184 (91.30%), Query Frame = 1


Query: 1   MEKSAETNTASTAVVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGA 60
           M+KS E NTAS AVVV+GS+ PCAACKILRRRCRENCELGPYFP MEPLKFTIAHRVFGA
Sbjct: 1   MKKSEEANTAS-AVVVMGSTQPCAACKILRRRCRENCELGPYFPPMEPLKFTIAHRVFGA 60

Query: 61  SNIIKLLQDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQA 120
           SNIIKLLQ+LP+SQR DAVNSMVYEAS RIRDPIYGCAGSIFHLQRQINDLQ ELAKAQA
Sbjct: 61  SNIIKLLQNLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQIELAKAQA 120

Query: 121 EVLRMHCQQANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLE 180
           EVLRMHCQQANLMTLICKELGQMP+PPMHDH      YNIASPQ Y+SYSYLFEE NVLE
Sbjct: 121 EVLRMHCQQANLMTLICKELGQMPEPPMHDH------YNIASPQGYYSYSYLFEESNVLE 177

Query: 181 PMWT 185
           P+WT
Sbjct: 181 PLWT 177

[Close]

BLAST of CSPI01G12870 vs. NCBI nr
Match: gi|659072131|ref|XP_008463550.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 240.7 bits (613), Expect = 2.0e-60
Identity = 118/182 (64.84%), Postives = 141/182 (77.47%), Query Frame = 1


Query: 9   TASTAVVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQ 68
           T    VVV    SPCAACKILRRRC E C L PYFP  +PLKFTIAHR+FGASNIIKLL 
Sbjct: 28  TVQAPVVV----SPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLL 87

Query: 69  DLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 128
           DLP+SQR DAV+S+VYEAS RIRDP+YGCAG+I  LQ+QIN+LQ ELAK QAE++ +HC 
Sbjct: 88  DLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCH 147

Query: 129 QANLMTLICKELGQMPQPPMH------DHQSLNDPYNIASPQSYHSYSYLFEECNVLEPM 185
           Q NL+ LICKEL Q P PPM       DH+SL++ +NIA+PQSY  Y+ LFE+ N+ +P+
Sbjct: 148 QTNLVALICKELAQTP-PPMSSLSLLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPL 204

[Close]

BLAST of CSPI01G12870 vs. NCBI nr
Match: gi|449459130|ref|XP_004147299.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 2.0e-57
Identity = 110/171 (64.33%), Postives = 136/171 (79.53%), Query Frame = 1


Query: 21  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 80
           +PCAACKILRRRC + C L PYFP  +PLKFTIAHR+FGASNIIKLL DLP+SQR DAV+
Sbjct: 39  TPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 98

Query: 81  SMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLICKEL 140
           S+VYEAS RIRDP+YGCAG+I  LQ+QIN+LQ ELAK QAE++ +HC Q NL+ LICKEL
Sbjct: 99  SLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKEL 158

Query: 141 GQMPQPPMH------DHQSLNDPYNI-ASPQSYHSYSYLFEECNVLEPMWT 185
            Q P PPM       +H+SL++ +NI A+PQSY  Y+ LF + N+ +P+WT
Sbjct: 159 AQTP-PPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 208

[Close]

BLAST of CSPI01G12870 vs. NCBI nr
Match: gi|763741718|gb|KJB09217.1| (hypothetical protein B456_001G129700 [Gossypium raimondii])

HSP 1 Score: 218.8 bits (556), Expect = 8.1e-54
Identity = 112/177 (63.28%), Postives = 133/177 (75.14%), Query Frame = 1


Query: 11  STAVVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDL 70
           ST+VV+    SPCAACKILRRRC E C L PYFP  EP KFTIAHRVFGASNIIK LQ+L
Sbjct: 112 STSVVI----SPCAACKILRRRCAEKCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQEL 171

Query: 71  PESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQA 130
           PESQR DAV+SMVYEAS RIRDP+YGC G+I  LQ+Q+N+LQ +LAKAQAEV+ M  QQA
Sbjct: 172 PESQRADAVSSMVYEASARIRDPVYGCTGAICQLQKQVNELQAQLAKAQAEVVNMQLQQA 231

Query: 131 NLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNV---LEPMWT 185
           NL+ L+C E+ Q PQ   + HQ +ND +   SPQSYHS     ++ N+    EP+WT
Sbjct: 232 NLVALLCMEVAQSPQ--QNPHQPIND-FLSNSPQSYHSNPSFLDDNNLGSSWEPLWT 281

The following BLAST results are available for this feature:

BLAST of CSPI01G12870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD1_ARATH	2.1e-46	61.90	LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1	[more]
LBD11_ARATH	5.8e-44	69.83	LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2	[more]
LBD4_ARATH	4.0e-37	46.71	LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1	[more]
LBD12_ARATH	1.4e-34	59.63	LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2	[more]
LBD13_ARATH	7.8e-33	57.02	LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2	[more]

BLAST of CSPI01G12870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUS4_CUCSA	2.2e-98	97.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G088440 PE=4 SV=1	[more]
A0A0D2LY54_GOSRA	5.6e-54	63.28	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G129700 PE=4 SV=1	[more]
A0A067LHN9_JATCU	2.1e-53	62.80	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05582 PE=4 SV=1	[more]
B9SK21_RICCO	4.8e-53	65.27	LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1399160 PE=4...	[more]
A0A061GTD1_THECC	1.8e-52	62.78	LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_041094 PE=4 SV=1	[more]

BLAST of CSPI01G12870 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07900.1	1.2e-47	61.90	LOB domain-containing protein 1	[more]
AT2G28500.1	3.3e-45	69.83	LOB domain-containing protein 11	[more]
AT1G31320.1	2.3e-38	46.71	LOB domain-containing protein 4	[more]
AT2G30130.1	8.0e-36	59.63	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G30340.1	4.4e-34	57.02	LOB domain-containing protein 13	[more]

BLAST of CSPI01G12870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459128\|ref\|XP_004147298.1\|	3.1e-98	97.83	PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus]	[more]
gi\|659072136\|ref\|XP_008463578.1\|	5.2e-85	86.96	PREDICTED: LOB domain-containing protein 1-like [Cucumis melo]	[more]
gi\|659072131\|ref\|XP_008463550.1\|	2.0e-60	64.84	PREDICTED: LOB domain-containing protein 1-like [Cucumis melo]	[more]
gi\|449459130\|ref\|XP_004147299.1\|	2.0e-57	64.33	PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus]	[more]
gi\|763741718\|gb\|KJB09217.1\|	8.1e-54	63.28	hypothetical protein B456_001G129700 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G12870.1	CSPI01G12870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 22..119 score: 1.3
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 21..122 score: 25
None	No IPR available	unknown	Coil	Coil	coord: 101..128 scor
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 21..156 score: 4.5
None	No IPR available	PANTHER	PTHR31301:SF14	LOB DOMAIN-CONTAINING PROTEIN 1-RELATED	coord: 21..156 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G12870	Cla005052	Watermelon (97103) v1	cpiwmB012
CSPI01G12870	Csa1G088440	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G12870	MELO3C005013	Melon (DHL92) v3.5.1	cpimeB011
CSPI01G12870	ClCG03G002360	Watermelon (Charleston Gray)	cpiwcgB040
CSPI01G12870	Lsi02G014410	Bottle gourd (USVL1VR-Ls)	cpilsiB023
CSPI01G12870	MELO3C005013.2	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G12870	CsaV3_1G013040	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G12870	Cla97C03G053390	Watermelon (97103) v2	cpiwmbB034
CSPI01G12870	Bhi08G000253	Wax gourd	cpiwgoB049
CSPI01G12870	Bhi08G000291	Wax gourd	cpiwgoB037
CSPI01G12870	Cucsa.207390	Cucumber (Gy14) v1	cgycpiB327
CSPI01G12870	CmaCh01G005340	Cucurbita maxima (Rimu)	cmacpiB434
CSPI01G12870	CmaCh13G001950	Cucurbita maxima (Rimu)	cmacpiB205
CSPI01G12870	CmoCh01G005640	Cucurbita moschata (Rifu)	cmocpiB425
CSPI01G12870	CmoCh13G001960	Cucurbita moschata (Rifu)	cmocpiB192
CSPI01G12870	CsGy1G012950	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G12870	Carg12308	Silver-seed gourd	carcpiB0477
CSPI01G12870	Carg21071	Silver-seed gourd	carcpiB0761

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G12870	Cucurbita maxima (Rimu)	cmacpiB586
CSPI01G12870	Cucurbita moschata (Rifu)	cmocpiB574
CSPI01G12870	Cucumber (Chinese Long) v2	cpicuB048
CSPI01G12870	Melon (DHL92) v3.5.1	cpimeB010
CSPI01G12870	Watermelon (Charleston Gray)	cpiwcgB035
CSPI01G12870	Watermelon (97103) v1	cpiwmB077
CSPI01G12870	Cucurbita pepo (Zucchini)	cpecpiB518
CSPI01G12870	Cucurbita pepo (Zucchini)	cpecpiB530
CSPI01G12870	Bottle gourd (USVL1VR-Ls)	cpilsiB004
CSPI01G12870	Melon (DHL92) v3.6.1	cpimedB009
CSPI01G12870	Cucumber (Chinese Long) v3	cpicucB059
CSPI01G12870	Watermelon (97103) v2	cpiwmbB029
CSPI01G12870	Wax gourd	cpiwgoB019
CSPI01G12870	Wild cucumber (PI 183967)	cpicpiB048