CsGy1G012950 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G012950
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	LOB domain-containing protein 1-like
Location	Chr1 : 8386107 .. 8387147 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAAGTGCAGAAACAAATACGGCGTCGACGGCGGTGGTGGTGGGTAGTTCTTCCCCATGTGCGGCTTGTAAAATTCTCCGGCGGAGATGCCGAGAGAATTGTGAATTAGGGCCCTATTTTCCTTCAATGGAACCTCTCAAATTCACTATCGCCCATAGAGTCTTTGGTGCTAGCAACATTATCAAGTTGCTTCAGGTAACCTTTTCTTTTTCCAACAAACCTTTCCTTTCTTTGGAAAAGATAAACATTCTTTACTAATCCTTAAAAAGGAAAATACATAACTAGAAGATCTTAGTTTATGATTCCTAACCTCATATTGAATTTGTTAGGATCTTCCTGAATCACAAAGAGGAGATGCTGTGAACAGTATGGTATACGAGGCAAGTACAAGAATAAGAGATCCAATCTATGGATGTGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTACAAGGCGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGGTCAAATGCCACAACCACCAATGCATGATCATCAATCACTTAACGACCCTTACAACATTGCTAGCCCTCAAAGTTATCACTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCATGTGGACTTGAAATAGTATTTAATCTAGTTTAGAATCAACGAGTTAGATTAGACATTGAGACATTACCTTCAAAAGATTTCGTACTTAAATACTTCAGTAATCAAGATGCTCTAAATAACGACTAAGTACTACTCTTTCATATATTTGACTTTAGTAGACTCGTTAGAATTTTTTTATATATACTTCTCATCTAGTTCCTTTAGTTTCTTTGAACTCCTCTCAATTCTTATCAAATGAATGGAAAAAATAGTCTCAAAATCTCATAGAAAAACAATACTTTAGTTATAAAACAGGCCACACATTGTATTCTCAATTTCTCTCTAAATCAATATATTATTTTCATGTCACAAATGTACATGGATCCT

mRNA sequence

ATGGAGAAAAGTGCAGAAACAAATACGGCGTCGACGGCGGTGGTGGATCTTCCTGAATCACAAAGAGGAGATGCTGTGAACAGTATGGTATACGAGGCAAGTACAAGAATAAGAGATCCAATCTATGGATGTGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTACAAGGCGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGGTCAAATGCCACAACCACCAATGCATGATCATCAATCACTTAACGACCCTTACAACATTGCTAGCCCTCAAAGTTATCACTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCATGTGGACTTGAAATAGTATTTAATCTAGTTTAGAATCAACGAGTTAGATTAGACATTGAGACATTACCTTCAAAAGATTTCGTACTTAAATACTTCAGTAATCAAGATGCTCTAAATAACGACTAAGTACTACTCTTTCATATATTTGACTTTAGTAGACTCGTTAGAATTTTTTTATATATACTTCTCATCTAGTTCCTTTAGTTTCTTTGAACTCCTCTCAATTCTTATCAAATGAATGGAAAAAATAGTCTCAAAATCTCATAGAAAAACAATACTTTAGTTATAAAACAGGCCACACATTGTATTCTCAATTTCTCTCTAAATCAATATATTATTTTCATGTCACAAATGTACATGGATCCT

Coding sequence (CDS)

ATGGAGAAAAGTGCAGAAACAAATACGGCGTCGACGGCGGTGGTGGATCTTCCTGAATCACAAAGAGGAGATGCTGTGAACAGTATGGTATACGAGGCAAGTACAAGAATAAGAGATCCAATCTATGGATGTGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTACAAGGCGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGGTCAAATGCCACAACCACCAATGCATGATCATCAATCACTTAACGACCCTTACAACATTGCTAGCCCTCAAAGTTATCACTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCATGTGGACTTGA

Protein sequence

MEKSAETNTASTAVVDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT

Homology

[Close]

BLAST of CsGy1G012950 vs. NCBI nr
Match: XP_004147298.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus] >KGN64754.1 hypothetical protein Csa_1G088440 [Cucumis sativus])

HSP 1 Score: 236.9 bits (603), Expect = 3.9e-59
Identity = 128/183 (69.95%), Postives = 129/183 (70.49%), Query Frame = 0


Query: 1   MEKSAETNTASTAVV--------------------------------------------- 60
           MEKSAETNTASTAVV                                             
Sbjct: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60

Query: 61  -------DLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120
                  DLPESQRGDAVNSMVYEAS RIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE
Sbjct: 61  NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120

Query: 121 VLRMHCQQANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 132
           VLRMHCQQANLMTLI KELGQ+PQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP
Sbjct: 121 VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180

[Close]

BLAST of CsGy1G012950 vs. NCBI nr
Match: XP_008463578.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 204.1 bits (518), Expect = 2.8e-49
Identity = 100/116 (86.21%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 16  DLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 75
           +LP+SQR DAVNSMVYEAS RIRDPIYGCAGSIFHLQRQINDLQ ELAKAQAEVLRMHCQ
Sbjct: 68  NLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQIELAKAQAEVLRMHCQ 127

Query: 76  QANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 132
           QANLMTLICKELGQMP+PPMHDH      YNIASPQ Y+SYSYLFEE NVLEP+WT
Sbjct: 128 QANLMTLICKELGQMPEPPMHDH------YNIASPQGYYSYSYLFEESNVLEPLWT 177

[Close]

BLAST of CsGy1G012950 vs. NCBI nr
Match: XP_022998902.1 (LOB domain-containing protein 1-like [Cucurbita maxima])

HSP 1 Score: 143.7 bits (361), Expect = 4.5e-31
Identity = 71/117 (60.68%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 16  DLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 75
           DLPESQR DAV+S+VYEAS RIRDP+YGCAG+I HLQ+QIN+LQ E+AK  AE++ M C 
Sbjct: 83  DLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCH 142

Query: 76  QANLMTLICKELGQMPQP-PMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 132
           QANL+ LICKEL Q P P P  DH SL++ ++ A+PQSY     LF++ N+ E +WT
Sbjct: 143 QANLVALICKELTQTPAPTPPPDHCSLDNNFSTATPQSYP----LFDDSNIWEALWT 195

[Close]

BLAST of CsGy1G012950 vs. NCBI nr
Match: XP_022949099.1 (LOB domain-containing protein 1-like [Cucurbita moschata])

HSP 1 Score: 143.3 bits (360), Expect = 5.9e-31
Identity = 71/118 (60.17%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 16  DLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 75
           DLPESQR DAV+S+VYEAS RIRDP+YGCAG+I HLQ+QIN+LQ E+AK  AE++ M C 
Sbjct: 83  DLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCH 142

Query: 76  QANLMTLICKELGQ--MPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 132
           QANL+ LICKEL Q   P PP  DH SL++ ++ A+PQSY     LF++ N+ E +WT
Sbjct: 143 QANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQSYP----LFDDSNIWEALWT 196

[Close]

BLAST of CsGy1G012950 vs. NCBI nr
Match: XP_023523637.1 (LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.9 bits (359), Expect = 7.7e-31
Identity = 71/118 (60.17%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 16  DLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 75
           DLPESQR DAV+S+VYEAS RIRDP+YGCAG+I HLQ+QIN+LQ E+AK  AE++ M C 
Sbjct: 83  DLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCH 142

Query: 76  QANLMTLICKELGQ--MPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 132
           QANL+ LICKEL Q   P PP  DH SL++ ++ A+PQSY     LF++ N+ E +WT
Sbjct: 143 QANLVALICKELTQTPAPTPPPPDHCSLDNNFSSATPQSYP----LFDDSNIWEALWT 196

[Close]

BLAST of CsGy1G012950 vs. TAIR10
Match: AT1G31320.1 (LOB domain-containing protein 4)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15
Identity = 45/116 (38.79%), Postives = 67/116 (57.76%), Query Frame = 0


Query: 16  DLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 75
           +LP  QRGDAV+SMVYEA+ R+RDP+YGC G+I  LQ+QI+ LQ +LA AQAEV+ +  +
Sbjct: 60  ELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR 119

Query: 76  QANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 132
           Q+          G  P  P       +   +    +   S+  + +E ++ E MW+
Sbjct: 120 QSTNF----PGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of CsGy1G012950 vs. TAIR10
Match: AT2G30340.1 (LOB domain-containing protein 13)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-14
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 8   NTASTAVVDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQA 67
           +  S  ++++ ESQRGDA NS+VYEA+ R+RDPIYGC G+I  LQ  I  LQ EL   + 
Sbjct: 91  SNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRT 150

Query: 68  EVLRMHCQQANLMT 82
           E+LR   Q+A  +T
Sbjct: 151 EILRHKYQEATTIT 164

[Close]

BLAST of CsGy1G012950 vs. TAIR10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 75.5 bits (184), Expect = 2.8e-14
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 8   NTASTAVVDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQA 67
           +  S  + +LP  QR DAVNS+V+EA+ R+RDP+YGC G+I +LQ Q++ LQ +LA AQA
Sbjct: 47  SNVSKMLQELPVHQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQA 106

Query: 68  EVLRMHCQ 76
           E+L +  Q
Sbjct: 107 EILCIQMQ 114

[Close]

BLAST of CsGy1G012950 vs. TAIR10
Match: AT2G28500.1 (LOB domain-containing protein 11)

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-13
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 16  DLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 75
           +LPESQR DAVNSMVYEA  R+RDP+YGCAG+I+HLQRQ+                   Q
Sbjct: 102 ELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVXXXXXXXXXXXXXXXXXXLQ 161

Query: 76  QANLMTLI 84
           +++L+ LI
Sbjct: 162 RSSLLELI 169

[Close]

BLAST of CsGy1G012950 vs. TAIR10
Match: AT2G40470.1 (LOB domain-containing protein 15)

HSP 1 Score: 71.2 bits (173), Expect = 5.2e-13
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 8   NTASTAVVDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQA 67
           +  S  ++++PESQR DA NS+VYEA+ R+RDP+YGC G+I  LQ+Q+     EL   ++
Sbjct: 84  SNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQAXXXELTAVRS 143

Query: 68  EVLRMHCQQANLMTLICKELGQM 91
           E+L+ + Q+  + TLI     Q+
Sbjct: 144 EILK-YKQREAVATLIVPSNSQV 165

[Close]

BLAST of CsGy1G012950 vs. Swiss-Prot
Match: sp|Q9SHE9|LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-14
Identity = 45/116 (38.79%), Postives = 67/116 (57.76%), Query Frame = 0


Query: 16  DLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 75
           +LP  QRGDAV+SMVYEA+ R+RDP+YGC G+I  LQ+QI+ LQ +LA AQAEV+ +  +
Sbjct: 60  ELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR 119

Query: 76  QANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 132
           Q+          G  P  P       +   +    +   S+  + +E ++ E MW+
Sbjct: 120 QSTNF----PGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of CsGy1G012950 vs. Swiss-Prot
Match: sp|Q9AT61|LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=LBD13 PE=1 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 2.2e-13
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 8   NTASTAVVDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQA 67
           +  S  ++++ ESQRGDA NS+VYEA+ R+RDPIYGC G+I  LQ  I  LQ EL   + 
Sbjct: 91  SNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRT 150

Query: 68  EVLRMHCQQANLMT 82
           E+LR   Q+A  +T
Sbjct: 151 EILRHKYQEATTIT 164

[Close]

BLAST of CsGy1G012950 vs. Swiss-Prot
Match: sp|Q8LBW3|LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 5.0e-13
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 8   NTASTAVVDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQA 67
           +  S  + +LP  QR DAVNS+V+EA+ R+RDP+YGC G+I +LQ Q++ LQ +LA AQA
Sbjct: 47  SNVSKMLQELPVHQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQA 106

Query: 68  EVLRMHCQ 76
           E+L +  Q
Sbjct: 107 EILCIQMQ 114

[Close]

BLAST of CsGy1G012950 vs. Swiss-Prot
Match: sp|Q9SK08|LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-12
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 16  DLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 75
           +LPESQR DAVNSMVYEA  R+RDP+YGCAG+I+HLQRQ+                   Q
Sbjct: 102 ELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVXXXXXXXXXXXXXXXXXXLQ 161

Query: 76  QANLMTLI 84
           +++L+ LI
Sbjct: 162 RSSLLELI 169

[Close]

BLAST of CsGy1G012950 vs. Swiss-Prot
Match: sp|Q8L5T5|LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 9.4e-12
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 8   NTASTAVVDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQA 67
           +  S  ++++PESQR DA NS+VYEA+ R+RDP+YGC G+I  LQ+Q+     EL   ++
Sbjct: 84  SNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQAXXXELTAVRS 143

Query: 68  EVLRMHCQQANLMTLICKELGQM 91
           E+L+ + Q+  + TLI     Q+
Sbjct: 144 EILK-YKQREAVATLIVPSNSQV 165

[Close]

BLAST of CsGy1G012950 vs. TrEMBL
Match: tr|A0A0A0LUS4|A0A0A0LUS4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G088440 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.6e-59
Identity = 128/183 (69.95%), Postives = 129/183 (70.49%), Query Frame = 0


Query: 1   MEKSAETNTASTAVV--------------------------------------------- 60
           MEKSAETNTASTAVV                                             
Sbjct: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60

Query: 61  -------DLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120
                  DLPESQRGDAVNSMVYEAS RIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE
Sbjct: 61  NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120

Query: 121 VLRMHCQQANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 132
           VLRMHCQQANLMTLI KELGQ+PQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP
Sbjct: 121 VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180

[Close]

BLAST of CsGy1G012950 vs. TrEMBL
Match: tr|A0A1S3CK31|A0A1S3CK31_CUCME (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501684 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.9e-49
Identity = 100/116 (86.21%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 16  DLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 75
           +LP+SQR DAVNSMVYEAS RIRDPIYGCAGSIFHLQRQINDLQ ELAKAQAEVLRMHCQ
Sbjct: 68  NLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQIELAKAQAEVLRMHCQ 127

Query: 76  QANLMTLICKELGQMPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 132
           QANLMTLICKELGQMP+PPMHDH      YNIASPQ Y+SYSYLFEE NVLEP+WT
Sbjct: 128 QANLMTLICKELGQMPEPPMHDH------YNIASPQGYYSYSYLFEESNVLEPLWT 177

[Close]

BLAST of CsGy1G012950 vs. TrEMBL
Match: tr|A0A1S3CK12|A0A1S3CK12_CUCME (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.4e-28
Identity = 66/124 (53.23%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 14  VVDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMH 73
           ++DLP+SQR DAV+S+VYEAS RIRDP+YGCAG+I  LQ+QIN                H
Sbjct: 82  LLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXH 141

Query: 74  CQQANLMTLICKELGQMPQPPMH------DHQSLNDPYNIASPQSYHSYSYLFEECNVLE 132
           C Q NL+ LICKEL Q P PPM       DH+SL++ +NIA+PQSY  Y+ LFE+ N+ +
Sbjct: 142 CHQTNLVALICKELAQTP-PPMSSLSLLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWD 201

[Close]

BLAST of CsGy1G012950 vs. TrEMBL
Match: tr|A0A2I4EHE8|A0A2I4EHE8_9ROSI (LOB domain-containing protein 1-like OS=Juglans regia OX=51240 GN=LOC108989605 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.5e-26
Identity = 69/126 (54.76%), Postives = 88/126 (69.84%), Query Frame = 0


Query: 16  DLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 75
           +LPESQR DAV+SMVYEAS RIRDP+YGCAG+I  LQ+ +N+LQ +LAKAQAE++ MHCQ
Sbjct: 85  ELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKHVNELQAQLAKAQAELVNMHCQ 144

Query: 76  QANLMTLICKELGQMPQPPMHDH-------QSLNDPYNI-ASPQSYH--SYSYLFE-ECN 131
           Q NL+ LIC E+ Q   P +HDH       QSL++  NI  +P SY   S +  F+ + N
Sbjct: 145 QTNLVALICMEMSQGSAPVLHDHQAASPHQQSLDNFININTTPHSYQMISSNQCFQLDDN 204

[Close]

BLAST of CsGy1G012950 vs. TrEMBL
Match: tr|A0A0A0LS55|A0A0A0LS55_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G088450 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.5e-26
Identity = 64/125 (51.20%), Postives = 84/125 (67.20%), Query Frame = 0


Query: 14  VVDLPESQRGDAVNSMVYEASTRIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMH 73
           ++DLP+SQR DAV+S+VYEAS RIRDP+YGCAG+I  LQ+QIN                H
Sbjct: 42  LLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXH 101

Query: 74  CQQANLMTLICKELGQMPQPPMH------DHQSLNDPYNI-ASPQSYHSYSYLFEECNVL 132
           C Q NL+ LICKEL Q P PPM       +H+SL++ +NI A+PQSY  Y+ LF + N+ 
Sbjct: 102 CHQTNLVALICKELAQTP-PPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIW 161

The following BLAST results are available for this feature:

BLAST of CsGy1G012950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147298.1	3.9e-59	69.95	PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus] >KGN64754.1 hy...	[more]
XP_008463578.1	2.8e-49	86.21	PREDICTED: LOB domain-containing protein 1-like [Cucumis melo]	[more]
XP_022998902.1	4.5e-31	60.68	LOB domain-containing protein 1-like [Cucurbita maxima]	[more]
XP_022949099.1	5.9e-31	60.17	LOB domain-containing protein 1-like [Cucurbita moschata]	[more]
XP_023523637.1	7.7e-31	60.17	LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy1G012950 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31320.1	1.1e-15	38.79	LOB domain-containing protein 4	[more]
AT2G30340.1	1.2e-14	50.00	LOB domain-containing protein 13	[more]
AT2G30130.1	2.8e-14	51.47	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G28500.1	1.4e-13	51.47	LOB domain-containing protein 11	[more]
AT2G40470.1	5.2e-13	42.17	LOB domain-containing protein 15	[more]

BLAST of CsGy1G012950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SHE9\|LBD4_ARATH	2.0e-14	38.79	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
sp\|Q9AT61\|LBD13_ARATH	2.2e-13	50.00	LOB domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=LBD13 PE=1 S...	[more]
sp\|Q8LBW3\|LBD12_ARATH	5.0e-13	51.47	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
sp\|Q9SK08\|LBD11_ARATH	2.5e-12	51.47	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
sp\|Q8L5T5\|LBD15_ARATH	9.4e-12	42.17	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]

BLAST of CsGy1G012950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUS4\|A0A0A0LUS4_CUCSA	2.6e-59	69.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G088440 PE=4 SV=1	[more]
tr\|A0A1S3CK31\|A0A1S3CK31_CUCME	1.9e-49	86.21	LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501684 PE=...	[more]
tr\|A0A1S3CK12\|A0A1S3CK12_CUCME	2.4e-28	53.23	LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=...	[more]
tr\|A0A2I4EHE8\|A0A2I4EHE8_9ROSI	6.5e-26	54.76	LOB domain-containing protein 1-like OS=Juglans regia OX=51240 GN=LOC108989605 P...	[more]
tr\|A0A0A0LS55\|A0A0A0LS55_CUCSA	8.5e-26	51.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G088450 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G012950.1	CsGy1G012950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 48..75
None	No IPR available	PANTHER	PTHR31301:SF6	LOB DOMAIN-CONTAINING PROTEIN 1-RELATED	coord: 16..131
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 16..131
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 13..66 e-value: 2.4E-14 score: 53.6
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 1..69 score: 10.94

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G012950	Cla005052	Watermelon (97103) v1	cgybwmB012
CsGy1G012950	Csa1G088440	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G012950	MELO3C005013	Melon (DHL92) v3.5.1	cgybmeB010
CsGy1G012950	ClCG03G002360	Watermelon (Charleston Gray)	cgybwcgB035
CsGy1G012950	CSPI01G12870	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G012950	CmaCh13G001950	Cucurbita maxima (Rimu)	cgybcmaB061
CsGy1G012950	CmaCh01G005340	Cucurbita maxima (Rimu)	cgybcmaB110
CsGy1G012950	CmoCh13G001960	Cucurbita moschata (Rifu)	cgybcmoB057
CsGy1G012950	Lsi02G014410	Bottle gourd (USVL1VR-Ls)	cgyblsiB020
CsGy1G012950	Cp4.1LG20g09100	Cucurbita pepo (Zucchini)	cgybcpeB084
CsGy1G012950	MELO3C005013.2	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G012950	CsaV3_1G013040	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G012950	Cla97C03G053390	Watermelon (97103) v2	cgybwmbB034
CsGy1G012950	Bhi08G000253	Wax gourd	cgybwgoB046
CsGy1G012950	Bhi08G000291	Wax gourd	cgybwgoB034
CsGy1G012950	Carg12308	Silver-seed gourd	carcgybB0449
CsGy1G012950	Carg21071	Silver-seed gourd	carcgybB0723

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G012950	Cucumber (Gy14) v2	cgybcgybB040
CsGy1G012950	Cucurbita maxima (Rimu)	cgybcmaB124
CsGy1G012950	Cucurbita moschata (Rifu)	cgybcmoB104
CsGy1G012950	Cucurbita moschata (Rifu)	cgybcmoB114
CsGy1G012950	Cucurbita pepo (Zucchini)	cgybcpeB036
CsGy1G012950	Cucurbita pepo (Zucchini)	cgybcpeB090
CsGy1G012950	Cucumber (Chinese Long) v2	cgybcuB046
CsGy1G012950	Bottle gourd (USVL1VR-Ls)	cgyblsiB003
CsGy1G012950	Melon (DHL92) v3.5.1	cgybmeB009
CsGy1G012950	Melon (DHL92) v3.6.1	cgybmedB008
CsGy1G012950	Watermelon (Charleston Gray)	cgybwcgB032
CsGy1G012950	Watermelon (97103) v1	cgybwmB072
CsGy1G012950	Wild cucumber (PI 183967)	cgybcpiB043
CsGy1G012950	Cucumber (Chinese Long) v3	cgybcucB050
CsGy1G012950	Watermelon (97103) v2	cgybwmbB030
CsGy1G012950	Wax gourd	cgybwgoB017