CsaV3_1G013040 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G013040
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionLOB domain-containing protein 1-like
Locationchr1 : 8384569 .. 8385621 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCATCAATTTCTCCAATCTCTCCCCCGCCTAAACTATGGAGAAAAGTGCAGAAACAAATACGGCGTCGACGGCGGTGGTGGTGGGTAGTTCTTCCCCATGTGCGGCTTGTAAAATTCTCCGGCGGAGATGCCGAGAGAATTGTGAATTAGGGCCCTATTTTCCTTCAATGGAACCTCTCAAATTCACTATCGCCCATAGAGTCTTTGGTGCTAGCAACATTATCAAGTTGCTTCAGGTAACCTTTTCTTTTTCCAACAAACCTTTCCTTTCTTTGGAAAAGATAAACATTCTTTACTAATCCTTAAAAAGGAAAATACATAACTAGAAGATCTTAGTTTATGATTCTTAACCTCATATTGAATTTGTTAGGATCTTCCTGAATCACAAAGAGGAGATGCTGTGAACAGTATGGTATACGAGGCAAGTGCAAGAATAAGAGATCCAATCTATGGATGCGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTACAAGGCGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGGAAGGAATTGGGTCAAGTGCCACAACCACCAATGCATGATCATCAATCACTTAACGACCCTTACAACATTGCTAGCCCTCAAAGTTATCACTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCATGTGGACTTGAAATAGTATTTAATCTAGTTTAGAATCAACGAGTTAGATTAGACATTGAGACATTACCTTCAAAAGATTTCGTACTTAAATACTTCAGTAATCAAGATGCTCTAAATAACGACTAAGTACTACTCTTTCATATATTTGACTTTAGTAGACTCGTTAGAATTTTTTTATATATACTTCTCATCTAGTTCCTTTAGTTTCTTTGAACTCCTCTCAATTCTTATCAAATGAATGGAAAAAATAGTCTCAAAATCTCATAGAAAAACAATACTTTAGTTATAAAACAGGCCACACATTGTATTCTCAATTTCTCTCTAAATCAATATATTATTTTC

mRNA sequence

ATGGAGAAAAGTGCAGAAACAAATACGGCGTCGACGGCGGTGGTGGTGGGTAGTTCTTCCCCATGTGCGGCTTGTAAAATTCTCCGGCGGAGATGCCGAGAGAATTGTGAATTAGGGCCCTATTTTCCTTCAATGGAACCTCTCAAATTCACTATCGCCCATAGAGTCTTTGGTGCTAGCAACATTATCAAGTTGCTTCAGGATCTTCCTGAATCACAAAGAGGAGATGCTGTGAACAGTATGGTATACGAGGCAAGTGCAAGAATAAGAGATCCAATCTATGGATGCGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTACAAGGCGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGGAAGGAATTGGGTCAAGTGCCACAACCACCAATGCATGATCATCAATCACTTAACGACCCTTACAACATTGCTAGCCCTCAAAGTTATCACTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCATGTGGACTTGA

Coding sequence (CDS)

ATGGAGAAAAGTGCAGAAACAAATACGGCGTCGACGGCGGTGGTGGTGGGTAGTTCTTCCCCATGTGCGGCTTGTAAAATTCTCCGGCGGAGATGCCGAGAGAATTGTGAATTAGGGCCCTATTTTCCTTCAATGGAACCTCTCAAATTCACTATCGCCCATAGAGTCTTTGGTGCTAGCAACATTATCAAGTTGCTTCAGGATCTTCCTGAATCACAAAGAGGAGATGCTGTGAACAGTATGGTATACGAGGCAAGTGCAAGAATAAGAGATCCAATCTATGGATGCGCAGGCTCAATTTTCCACCTCCAAAGACAAATAAATGACCTACAAGGCGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTGATGACTCTAATTTGGAAGGAATTGGGTCAAGTGCCACAACCACCAATGCATGATCATCAATCACTTAACGACCCTTACAACATTGCTAGCCCTCAAAGTTATCACTCCTATTCATACTTATTTGAGGAGTGTAATGTTTTGGAGCCCATGTGGACTTGA

Protein sequence

MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT
Homology
[Close]
BLAST of CsaV3_1G013040 vs. NCBI nr
Match: XP_004147298.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus] >KGN64754.1 hypothetical protein Csa_1G088440 [Cucumis sativus])

HSP 1 Score: 379.0 bits (972), Expect = 9.0e-102
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60
           MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS
Sbjct: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60

Query: 61  NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120
           NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE
Sbjct: 61  NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120

Query: 121 VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180
           VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP
Sbjct: 121 VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180

Query: 181 MWT 184
           MWT
Sbjct: 181 MWT 183

[Close]
BLAST of CsaV3_1G013040 vs. NCBI nr
Match: XP_008463578.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 319.7 bits (818), Expect = 6.5e-84
Identity = 157/183 (85.79%), Postives = 166/183 (90.71%), Query Frame = 0 

Query: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60
           M+KS E NTAS  VV+GS+ PCAACKILRRRCRENCELGPYFP MEPLKFTIAHRVFGAS
Sbjct: 1   MKKSEEANTASAVVVMGSTQPCAACKILRRRCRENCELGPYFPPMEPLKFTIAHRVFGAS 60

Query: 61  NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120
           NIIKLLQ+LP+SQR DAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQ ELAKAQAE
Sbjct: 61  NIIKLLQNLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQIELAKAQAE 120

Query: 121 VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180
           VLRMHCQQANLMTLI KELGQ+P+PPMHDH      YNIASPQ Y+SYSYLFEE NVLEP
Sbjct: 121 VLRMHCQQANLMTLICKELGQMPEPPMHDH------YNIASPQGYYSYSYLFEESNVLEP 177

Query: 181 MWT 184
           +WT
Sbjct: 181 LWT 177

[Close]
BLAST of CsaV3_1G013040 vs. NCBI nr
Match: XP_022998902.1 (LOB domain-containing protein 1-like [Cucurbita maxima])

HSP 1 Score: 228.0 bits (580), Expect = 2.6e-56
Identity = 111/165 (67.27%), Postives = 132/165 (80.00%), Query Frame = 0 

Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           +PCAACKILRRRC E C L PYFP  +PLKFTIAHRVFGASNIIKLLQDLPESQR DAV+
Sbjct: 35  TPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVS 94

Query: 80  SMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIWKEL 139
           S+VYEASARIRDP+YGCAG+I HLQ+QIN+LQ E+AK  AE++ M C QANL+ LI KEL
Sbjct: 95  SLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQANLVALICKEL 154

Query: 140 GQVPQP-PMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 184
            Q P P P  DH SL++ ++ A+PQSY     LF++ N+ E +WT
Sbjct: 155 TQTPAPTPPPDHCSLDNNFSTATPQSYP----LFDDSNIWEALWT 195

[Close]
BLAST of CsaV3_1G013040 vs. NCBI nr
Match: XP_023525656.1 (LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.1 bits (575), Expect = 9.8e-56
Identity = 110/166 (66.27%), Postives = 131/166 (78.92%), Query Frame = 0 

Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           SPCAACK LRRRC E C L PYFP  +PLKFTIAHR+FGASNIIKLLQDLPESQR DAV+
Sbjct: 35  SPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRADAVS 94

Query: 80  SMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIWKEL 139
           S+VYEASARIRDP+YGCAG+I HLQ+QIN+LQ E+AK  AE++ M C QANL+ LI KEL
Sbjct: 95  SLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQANLVALICKEL 154

Query: 140 GQ--VPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 184
            Q   P PP  DH SL++ ++ A+PQSY     LF++ N+ E +WT
Sbjct: 155 TQTPAPTPPPPDHCSLDNNFSSATPQSYP----LFDDSNIWEALWT 196

[Close]
BLAST of CsaV3_1G013040 vs. NCBI nr
Match: XP_023523637.1 (LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.2 bits (570), Expect = 3.7e-55
Identity = 110/164 (67.07%), Postives = 130/164 (79.27%), Query Frame = 0 

Query: 22  CAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVNSM 81
           CAACKILRRRC E C L PYFP  +PLKFTIAHRVFGASNIIKLLQDLPESQR DAV+S+
Sbjct: 37  CAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSL 96

Query: 82  VYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIWKELGQ 141
           VYEASARIRDP+YGCAG+I HLQ+QIN+LQ E+AK  AE++ M C QANL+ LI KEL Q
Sbjct: 97  VYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQANLVALICKELTQ 156

Query: 142 --VPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 184
              P PP  DH SL++ ++ A+PQSY     LF++ N+ E +WT
Sbjct: 157 TPAPTPPPPDHCSLDNNFSSATPQSYP----LFDDSNIWEALWT 196

[Close]
BLAST of CsaV3_1G013040 vs. TAIR10
Match: AT1G31320.1 (LOB domain-containing protein 4)

HSP 1 Score: 158.7 bits (400), Expect = 3.5e-39
Identity = 79/167 (47.31%), Postives = 110/167 (65.87%), Query Frame = 0 

Query: 17  GSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGD 76
           G++SPCAACK+LRRRC ++C   PYFP+ EP KF   HRVFGASN+ K+LQ+LP  QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 77  AVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIW 136
           AV+SMVYEA+AR+RDP+YGC G+I  LQ+QI+ LQ +LA AQAEV+ +  +Q+      +
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQST----NF 128

Query: 137 KELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 184
              G  P  P       +   +    +   S+  + +E ++ E MW+
Sbjct: 129 PGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]
BLAST of CsaV3_1G013040 vs. TAIR10
Match: AT2G28500.1 (LOB domain-containing protein 11)

HSP 1 Score: 157.9 bits (398), Expect = 5.9e-39
Identity = 74/117 (63.25%), Postives = 87/117 (74.36%), Query Frame = 0 

Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           SPCAACKILRRRC + C L PYFP  +P KFTIAHRVFGASNIIK LQ+LPESQR DAVN
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 80  SMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIW 137
           SMVYEA AR+RDP+YGCAG+I+HLQRQ+                   Q+++L+ LI+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVXXXXXXXXXXXXXXXXXXLQRSSLLELIY 170

[Close]
BLAST of CsaV3_1G013040 vs. TAIR10
Match: AT1G07900.1 (LOB domain-containing protein 1)

HSP 1 Score: 155.6 bits (392), Expect = 2.9e-38
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0 

Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           SPCAACKILRRRC E C L PYFP  +P KFTIAHRVFGASNIIK LQ+LPESQR DAVN
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 80  SMVYEASARIRDPIYGCAGSIFHLQR 106
           SMVYEA ARIRDP+YGCAG+I+HLQR
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQR 117

[Close]
BLAST of CsaV3_1G013040 vs. TAIR10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 148.7 bits (374), Expect = 3.6e-36
Identity = 66/109 (60.55%), Postives = 87/109 (79.82%), Query Frame = 0 

Query: 19  SSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAV 78
           SSPCA+CK+LRRRC ++C   PYFP  +P KF I H+VFGASN+ K+LQ+LP  QR DAV
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 79  NSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 128
           NS+V+EA+AR+RDP+YGC G+I +LQ Q++ LQ +LA AQAE+L +  Q
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]
BLAST of CsaV3_1G013040 vs. TAIR10
Match: AT2G30340.1 (LOB domain-containing protein 13)

HSP 1 Score: 141.7 bits (356), Expect = 4.4e-34
Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 0 

Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           +PCAACK+LRRRC E C   PYF   EP KF   H+VFGASN+ K+L ++ ESQRGDA N
Sbjct: 51  TPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAAN 110

Query: 80  SMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMT 134
           S+VYEA+ R+RDPIYGC G+I  LQ  I  LQ EL   + E+LR   Q+A  +T
Sbjct: 111 SLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTIT 164

[Close]
BLAST of CsaV3_1G013040 vs. Swiss-Prot
Match: sp|Q9SHE9|LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 6.3e-38
Identity = 79/167 (47.31%), Postives = 110/167 (65.87%), Query Frame = 0 

Query: 17  GSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGD 76
           G++SPCAACK+LRRRC ++C   PYFP+ EP KF   HRVFGASN+ K+LQ+LP  QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 77  AVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIW 136
           AV+SMVYEA+AR+RDP+YGC G+I  LQ+QI+ LQ +LA AQAEV+ +  +Q+      +
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQST----NF 128

Query: 137 KELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 184
              G  P  P       +   +    +   S+  + +E ++ E MW+
Sbjct: 129 PGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]
BLAST of CsaV3_1G013040 vs. Swiss-Prot
Match: sp|Q9SK08|LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-37
Identity = 74/117 (63.25%), Postives = 87/117 (74.36%), Query Frame = 0 

Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           SPCAACKILRRRC + C L PYFP  +P KFTIAHRVFGASNIIK LQ+LPESQR DAVN
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 80  SMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIW 137
           SMVYEA AR+RDP+YGCAG+I+HLQRQ+                   Q+++L+ LI+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVXXXXXXXXXXXXXXXXXXLQRSSLLELIY 170

[Close]
BLAST of CsaV3_1G013040 vs. Swiss-Prot
Match: sp|Q9LQR0|LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.3e-37
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0 

Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           SPCAACKILRRRC E C L PYFP  +P KFTIAHRVFGASNIIK LQ+LPESQR DAVN
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 80  SMVYEASARIRDPIYGCAGSIFHLQR 106
           SMVYEA ARIRDP+YGCAG+I+HLQR
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQR 117

[Close]
BLAST of CsaV3_1G013040 vs. Swiss-Prot
Match: sp|Q8LBW3|LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 6.5e-35
Identity = 66/109 (60.55%), Postives = 87/109 (79.82%), Query Frame = 0 

Query: 19  SSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAV 78
           SSPCA+CK+LRRRC ++C   PYFP  +P KF I H+VFGASN+ K+LQ+LP  QR DAV
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 79  NSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQ 128
           NS+V+EA+AR+RDP+YGC G+I +LQ Q++ LQ +LA AQAE+L +  Q
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]
BLAST of CsaV3_1G013040 vs. Swiss-Prot
Match: sp|Q9AT61|LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=LBD13 PE=1 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 7.9e-33
Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 0 

Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           +PCAACK+LRRRC E C   PYF   EP KF   H+VFGASN+ K+L ++ ESQRGDA N
Sbjct: 51  TPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAAN 110

Query: 80  SMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMT 134
           S+VYEA+ R+RDPIYGC G+I  LQ  I  LQ EL   + E+LR   Q+A  +T
Sbjct: 111 SLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTIT 164

[Close]
BLAST of CsaV3_1G013040 vs. TrEMBL
Match: tr|A0A0A0LUS4|A0A0A0LUS4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G088440 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 6.0e-102
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60
           MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS
Sbjct: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60

Query: 61  NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120
           NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE
Sbjct: 61  NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120

Query: 121 VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180
           VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP
Sbjct: 121 VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180

Query: 181 MWT 184
           MWT
Sbjct: 181 MWT 183

[Close]
BLAST of CsaV3_1G013040 vs. TrEMBL
Match: tr|A0A1S3CK31|A0A1S3CK31_CUCME (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501684 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 4.3e-84
Identity = 157/183 (85.79%), Postives = 166/183 (90.71%), Query Frame = 0 

Query: 1   MEKSAETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGAS 60
           M+KS E NTAS  VV+GS+ PCAACKILRRRCRENCELGPYFP MEPLKFTIAHRVFGAS
Sbjct: 1   MKKSEEANTASAVVVMGSTQPCAACKILRRRCRENCELGPYFPPMEPLKFTIAHRVFGAS 60

Query: 61  NIIKLLQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAE 120
           NIIKLLQ+LP+SQR DAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQ ELAKAQAE
Sbjct: 61  NIIKLLQNLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQIELAKAQAE 120

Query: 121 VLRMHCQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEP 180
           VLRMHCQQANLMTLI KELGQ+P+PPMHDH      YNIASPQ Y+SYSYLFEE NVLEP
Sbjct: 121 VLRMHCQQANLMTLICKELGQMPEPPMHDH------YNIASPQGYYSYSYLFEESNVLEP 177

Query: 181 MWT 184
           +WT
Sbjct: 181 LWT 177

[Close]
BLAST of CsaV3_1G013040 vs. TrEMBL
Match: tr|A0A1S3CK12|A0A1S3CK12_CUCME (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 6.7e-53
Identity = 105/170 (61.76%), Postives = 124/170 (72.94%), Query Frame = 0 

Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           SPCAACKILRRRC E C L PYFP  +PLKFTIAHR+FGASNIIKLL DLP+SQR DAV+
Sbjct: 36  SPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 95

Query: 80  SMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIWKEL 139
           S+VYEASARIRDP+YGCAG+I  LQ+QIN                HC Q NL+ LI KEL
Sbjct: 96  SLVYEASARIRDPVYGCAGAICQLQKQINXXXXXXXXXXXXXXXXHCHQTNLVALICKEL 155

Query: 140 GQVPQPPMH------DHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 184
            Q P PPM       DH+SL++ +NIA+PQSY  Y+ LFE+ N+ +P+WT
Sbjct: 156 AQTP-PPMSSLSLLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 204

[Close]
BLAST of CsaV3_1G013040 vs. TrEMBL
Match: tr|A0A2I4EHE8|A0A2I4EHE8_9ROSI (LOB domain-containing protein 1-like OS=Juglans regia OX=51240 GN=LOC108989605 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 104/169 (61.54%), Postives = 123/169 (72.78%), Query Frame = 0 

Query: 25  CKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVNSMVYE 84
           CKILRRRC E C L PYFP  EP KFTIAHRVFGASNIIK LQ+LPESQR DAV+SMVYE
Sbjct: 42  CKILRRRCAEKCVLAPYFPPSEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYE 101

Query: 85  ASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIWKELGQVPQ 144
           ASARIRDP+YGCAG+I  LQ+ +N+LQ +LAKAQAE++ MHCQQ NL+ LI  E+ Q   
Sbjct: 102 ASARIRDPVYGCAGAICQLQKHVNELQAQLAKAQAELVNMHCQQTNLVALICMEMSQGSA 161

Query: 145 PPMHDH-------QSLNDPYNI-ASPQSYH--SYSYLFE-ECNVLEPMW 183
           P +HDH       QSL++  NI  +P SY   S +  F+ + N L  MW
Sbjct: 162 PVLHDHQAASPHQQSLDNFININTTPHSYQMISSNQCFQLDDNSLGSMW 210

[Close]
BLAST of CsaV3_1G013040 vs. TrEMBL
Match: tr|A0A1S2XCK5|A0A1S2XCK5_CICAR (LOB domain-containing protein 1-like OS=Cicer arietinum OX=3827 GN=LOC101508383 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.2e-47
Identity = 101/172 (58.72%), Postives = 122/172 (70.93%), Query Frame = 0 

Query: 20  SPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQDLPESQRGDAVN 79
           SPCAACK LRRRC E C L PYFP  +P KFT  HRVFGASNIIK+LQ++PESQR DAV+
Sbjct: 23  SPCAACKFLRRRCAEKCVLAPYFPPTQPAKFTTVHRVFGASNIIKILQEIPESQRADAVS 82

Query: 80  SMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMHCQQANLMTLIWKEL 139
           SMVYEASARIRDP+YGCAG+I HLQ+QIN+LQ +LAK QAE++    +QANLMTLI    
Sbjct: 83  SMVYEASARIRDPVYGCAGTICHLQKQINELQEQLAKTQAEIINKQFEQANLMTLICNM- 142

Query: 140 GQVPQPPMHDHQSLNDPYNIASP---QSYHSYSYLFEECNV-----LEPMWT 184
            ++ + P    Q   D + I+SP     YH+    FEE N+      EP+WT
Sbjct: 143 -EMEETPQESPQQSFDNF-ISSPSHNSDYHNNLNFFEENNIGLISSWEPLWT 191

The following BLAST results are available for this feature:
BLAST of CsaV3_1G013040 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147298.19.0e-102100.00PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus] >KGN64754.1 hy... [more]
XP_008463578.16.5e-8485.79PREDICTED: LOB domain-containing protein 1-like [Cucumis melo][more]
XP_022998902.12.6e-5667.27LOB domain-containing protein 1-like [Cucurbita maxima][more]
XP_023525656.19.8e-5666.27LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_023523637.13.7e-5567.07LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_1G013040 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G31320.13.5e-3947.31LOB domain-containing protein 4[more]
AT2G28500.15.9e-3963.25LOB domain-containing protein 11[more]
AT1G07900.12.9e-3882.56LOB domain-containing protein 1[more]
AT2G30130.13.6e-3660.55Lateral organ boundaries (LOB) domain family protein[more]
AT2G30340.14.4e-3457.02LOB domain-containing protein 13[more]
BLAST of CsaV3_1G013040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SHE9|LBD4_ARATH6.3e-3847.31LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=... [more]
sp|Q9SK08|LBD11_ARATH1.1e-3763.25LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S... [more]
sp|Q9LQR0|LBD1_ARATH5.3e-3782.56LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=... [more]
sp|Q8LBW3|LBD12_ARATH6.5e-3560.55LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S... [more]
sp|Q9AT61|LBD13_ARATH7.9e-3357.02LOB domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=LBD13 PE=1 S... [more]
BLAST of CsaV3_1G013040 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LUS4|A0A0A0LUS4_CUCSA6.0e-102100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G088440 PE=4 SV=1[more]
tr|A0A1S3CK31|A0A1S3CK31_CUCME4.3e-8485.79LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501684 PE=... [more]
tr|A0A1S3CK12|A0A1S3CK12_CUCME6.7e-5361.76LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=... [more]
tr|A0A2I4EHE8|A0A2I4EHE8_9ROSI1.1e-4761.54LOB domain-containing protein 1-like OS=Juglans regia OX=51240 GN=LOC108989605 P... [more]
tr|A0A1S2XCK5|A0A1S2XCK5_CICAR7.2e-4758.72LOB domain-containing protein 1-like OS=Cicer arietinum OX=3827 GN=LOC101508383 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016874 ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G013040.1CsaV3_1G013040.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 100..127
NoneNo IPR availablePANTHERPTHR31301:SF6LOB DOMAIN-CONTAINING PROTEIN 1-RELATEDcoord: 9..183
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 9..183
IPR004883Lateral organ boundaries, LOBPFAMPF03195LOBcoord: 21..118
e-value: 5.8E-39
score: 132.5
IPR004883Lateral organ boundaries, LOBPROSITEPS50891LOBcoord: 20..121
score: 25.425

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G013040CSPI01G12870Wild cucumber (PI 183967)cpicucB001
CsaV3_1G013040Cucsa.207390Cucumber (Gy14) v1cgycucB332
CsaV3_1G013040CmaCh13G001950Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G013040CmaCh01G005340Cucurbita maxima (Rimu)cmacucB0518
CsaV3_1G013040CmoCh01G005640Cucurbita moschata (Rifu)cmocucB0505
CsaV3_1G013040CmoCh13G001960Cucurbita moschata (Rifu)cmocucB0221
CsaV3_1G013040CsGy1G012950Cucumber (Gy14) v2cgybcucB002
CsaV3_1G013040Carg12308Silver-seed gourdcarcucB0474
CsaV3_1G013040Carg21071Silver-seed gourdcarcucB0764
CsaV3_1G013040Cla005052Watermelon (97103) v1cucwmB015
CsaV3_1G013040MELO3C005013Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G013040ClCG03G002360Watermelon (Charleston Gray)cucwcgB040
CsaV3_1G013040Lsi02G014410Bottle gourd (USVL1VR-Ls)cuclsiB025
CsaV3_1G013040MELO3C005013.2Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G013040Cla97C03G053390Watermelon (97103) v2cucwmbB032
CsaV3_1G013040Bhi08G000291Wax gourdcucwgoB040
CsaV3_1G013040Bhi08G000253Wax gourdcucwgoB051
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G013040Cucumber (Chinese Long) v3cuccucB055
CsaV3_1G013040Cucumber (Gy14) v2cgybcucB256
CsaV3_1G013040Cucurbita maxima (Rimu)cmacucB0649
CsaV3_1G013040Cucurbita maxima (Rimu)cmacucB0693
CsaV3_1G013040Cucurbita moschata (Rifu)cmocucB0634
CsaV3_1G013040Cucurbita moschata (Rifu)cmocucB0678
CsaV3_1G013040Cucurbita pepo (Zucchini)cpecucB0332
CsaV3_1G013040Cucurbita pepo (Zucchini)cpecucB0635
CsaV3_1G013040Cucurbita pepo (Zucchini)cpecucB0657
CsaV3_1G013040Wild cucumber (PI 183967)cpicucB320
CsaV3_1G013040Bottle gourd (USVL1VR-Ls)cuclsiB002
CsaV3_1G013040Melon (DHL92) v3.5.1cucmeB009
CsaV3_1G013040Melon (DHL92) v3.6.1cucmedB008
CsaV3_1G013040Watermelon (Charleston Gray)cucwcgB035
CsaV3_1G013040Watermelon (97103) v1cucwmB080
CsaV3_1G013040Watermelon (97103) v2cucwmbB028
CsaV3_1G013040Wax gourdcucwgoB022