Cla005052 (gene) Watermelon (97103) v1

Overview
NameCla005052
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionLOB domain protein 1 (AHRD V1 ***- D7KHW8_ARALL); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB
LocationChr3 : 2602699 .. 2604207 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAAAATGAGGCACATACGGTGGCGGTGGGTAGTCCGTGTGCGGCTTGTAAAATTCTCCGGCGAAGATGCCGAGAGAATTGCGAATTGGGGCCGTATTTTCCTCCAACGGAACCTCTCAAATTCACTATTGCTCATAGGGTCTTCGGTGCTAGCAACATCATCAAATTGCTTCAGGTAATTTCTCTTTGTTTGGTAACGGTTTTGTTTCTAGCTGATTACTGGATATAAACCTTTCCTTTAGATTCAATAAAGTTTTAGATTCAATAAAGTTTAAGGATTGATTTTAAATTCAATAAACTGAAATCCAAAAAATAATTTTAAACTAATTACTTCATATCAAATAATAAAGATTGAATTAGAATAGTGACTTAAAAAAAATTAAGAATTTAGTGATATAGGCATGTGTTAATTGAAAACTTAAAATAAAGTTAAATTAGTAATTTACTTCTAAATCCTATAAATAAAATAATGTGAAATTTGATTATTCCAGTCAGAATAAAATTTGAAATCACTCCAAGTTTTAAAATTACTCTTTTTTATTGCAACAAATAATAAAATTTATTTAAAATCTGTTAGGATTTGAAACCCATCAAAATCATAACGTTGAAAACATGCCAACTATTGTTCGATATTTGCTGTGTTTGCACATGTATATGCAAGTTTTTTTTAGTTCACACCATATGCAAATTAATGATTTTATATATTTTGGAAGTGATAATAAACTTTTAGTATTTTTTATGATATATTTACTTTTAGGTCATCATCTTTATACTTACAAAGAAGGTTACATCTAACAATGTTCAATATAATGAGACATTACTTTGTAAAGAGATATTGCCTTTTATATAAAGAGATATTACTATGTATATACAATCTCTTTCGTTCTATATCATTCAATGACAAAGTCAACTAAGATTGAAGACCTTTAATAACACATTTTTCAATATTGGTTGTCAACCTACATTGTATGCTATAACGTCGATTTTCAACTAATGTTATAGCCTAGTTTTTTACTAGTAACAAGAAATACATTAAAATATTAAAAAAAAAAAAATCTAAGTTTAAGATACTTAACCATTTAAAATTTTCAGCTAGTGTCTTCTCTAGAAAGTTATTAAAGCTAGTTTAATATTGTATTATTGAATATTTTAGGATCTTCCTAAGTCGCAAAGAGCAGATGCTGTGAACAGTATGGTATATGAGGCAAGTGCAAGAATAAGAGATCCAATTTATGGATGTGCTGGCTCAATTTTCCAACTCCAAAAACAAATAAATGACCTACAAGGAGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAAAATGCAATGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGCTCAAATGCCACAACCACCAATGTATGATCATCAACCACTTAATCAAAATTACAACATTTCTAGCCCTCAAAGTTATCAAACCTATTCATACTTATTTGAGGAGGGTAATATTTTGGAGCCTCTTTGGACTTGA

mRNA sequence

ATGGAGAAAAATGAGGCACATACGGTGGCGGTGGGTAGTCCGTGTGCGGCTTGTAAAATTCTCCGGCGAAGATGCCGAGAGAATTGCGAATTGGGGCCGTATTTTCCTCCAACGGAACCTCTCAAATTCACTATTGCTCATAGGGTCTTCGGTGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTAAGTCGCAAAGAGCAGATGCTGTGAACAGTATGGTATATGAGGCAAGTGCAAGAATAAGAGATCCAATTTATGGATGTGCTGGCTCAATTTTCCAACTCCAAAAACAAATAAATGACCTACAAGGAGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAAAATGCAATGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGCTCAAATGCCACAACCACCAATGTATGATCATCAACCACTTAATCAAAATTACAACATTTCTAGCCCTCAAAGTTATCAAACCTATTCATACTTATTTGAGGAGGGTAATATTTTGGAGCCTCTTTGGACTTGA

Coding sequence (CDS)

ATGGAGAAAAATGAGGCACATACGGTGGCGGTGGGTAGTCCGTGTGCGGCTTGTAAAATTCTCCGGCGAAGATGCCGAGAGAATTGCGAATTGGGGCCGTATTTTCCTCCAACGGAACCTCTCAAATTCACTATTGCTCATAGGGTCTTCGGTGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTAAGTCGCAAAGAGCAGATGCTGTGAACAGTATGGTATATGAGGCAAGTGCAAGAATAAGAGATCCAATTTATGGATGTGCTGGCTCAATTTTCCAACTCCAAAAACAAATAAATGACCTACAAGGAGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAAAATGCAATGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGCTCAAATGCCACAACCACCAATGTATGATCATCAACCACTTAATCAAAATTACAACATTTCTAGCCCTCAAAGTTATCAAACCTATTCATACTTATTTGAGGAGGGTAATATTTTGGAGCCTCTTTGGACTTGA

Protein sequence

MEKNEAHTVAVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTLICKELAQMPQPPMYDHQPLNQNYNISSPQSYQTYSYLFEEGNILEPLWT
Homology
[Close]
BLAST of Cla005052 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.6e-46
Identity = 86/116 (74.14%), Postives = 100/116 (86.21%), Query Frame = 1 

Query: 13  SPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVN 72
           SPCAACKILRRRC E C L PYFPPT+P KFTIAHRVFGASNIIK LQ+LP+SQR DAVN
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 73  SMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTLI 129
           SMVYEA ARIRDP+YGCAG+I+ LQ+Q+++LQ +LAKAQ E++ MQ Q++NL+ LI
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELI 147

[Close]
BLAST of Cla005052 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2)

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-44
Identity = 82/116 (70.69%), Postives = 99/116 (85.34%), Query Frame = 1 

Query: 13  SPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVN 72
           SPCAACKILRRRC + C L PYFPPT+P KFTIAHRVFGASNIIK LQ+LP+SQR DAVN
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 73  SMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTLI 129
           SMVYEA AR+RDP+YGCAG+I+ LQ+Q+++LQ +LAK Q E++ MQ Q+++L+ LI
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI 169

[Close]
BLAST of Cla005052 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.5e-36
Identity = 76/174 (43.68%), Postives = 106/174 (60.92%), Query Frame = 1 

Query: 3   KNEAHTVAVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDL 62
           K  +      SPCAACK+LRRRC ++C   PYFP  EP KF   HRVFGASN+ K+LQ+L
Sbjct: 2   KESSRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQEL 61

Query: 63  PKSQRADAVNSMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQA 122
           P  QR DAV+SMVYEA+AR+RDP+YGC G+I  LQ+QI+ LQ +LA AQAEV+ ++ +Q+
Sbjct: 62  PIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

Query: 123 NLMTLICKELAQMPQPPMYDHQPLNQNYNISSPQSYQTYSYLFEEGNILEPLWT 177
                        P  P     P ++  +    +   ++  + +E ++ E +W+
Sbjct: 122 TNF----PGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]
BLAST of Cla005052 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 151.4 bits (381), Expect = 9.4e-36
Identity = 68/108 (62.96%), Postives = 86/108 (79.63%), Query Frame = 1 

Query: 13  SPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVN 72
           SPCA+CK+LRRRC ++C   PYFPP +P KF I H+VFGASN+ K+LQ+LP  QRADAVN
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 73  SMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQ 121
           S+V+EA+AR+RDP+YGC G+I  LQ Q++ LQ +LA AQAE+L +Q Q
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ 114

[Close]
BLAST of Cla005052 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 2.6e-33
Identity = 66/123 (53.66%), Postives = 89/123 (72.36%), Query Frame = 1 

Query: 13  SPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVN 72
           +PCAACK+LRRRC + C   PYF P EP KF   H+VFGASN+ K+L ++P+SQRADA N
Sbjct: 44  TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAAN 103

Query: 73  SMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTLICKEL 132
           S+VYEA+ R+RDP+YGC G+I  LQ+Q+  LQ EL   ++E+LK + ++A + TLI    
Sbjct: 104 SLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREA-VATLIVPSN 163

Query: 133 AQM 136
           +Q+
Sbjct: 164 SQV 165

[Close]
BLAST of Cla005052 vs. TrEMBL
Match: A0A0A0LUS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G088440 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 6.3e-79
Identity = 148/178 (83.15%), Postives = 157/178 (88.20%), Query Frame = 1 

Query: 2   EKNEAHTVAV---GSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKL 61
           E N A T  V    SPCAACKILRRRCRENCELGPYFP  EPLKFTIAHRVFGASNIIKL
Sbjct: 6   ETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKL 65

Query: 62  LQDLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQ 121
           LQDLP+SQR DAVNSMVYEASARIRDPIYGCAGSIF LQ+QINDLQGELAKAQAEVL+M 
Sbjct: 66  LQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMH 125

Query: 122 CQQANLMTLICKELAQMPQPPMYDHQPLNQNYNISSPQSYQTYSYLFEEGNILEPLWT 177
           CQQANLMTLI KEL Q+PQPPM+DHQ LN  YNI+SPQSY +YSYLFEE N+LEP+WT
Sbjct: 126 CQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 183

[Close]
BLAST of Cla005052 vs. TrEMBL
Match: A0A0D2LY54_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G129700 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.0e-57
Identity = 116/172 (67.44%), Postives = 136/172 (79.07%), Query Frame = 1 

Query: 8   TVAVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQR 67
           T  V SPCAACKILRRRC E C L PYFPPTEP KFTIAHRVFGASNIIK LQ+LP+SQR
Sbjct: 113 TSVVISPCAACKILRRRCAEKCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQELPESQR 172

Query: 68  ADAVNSMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTL 127
           ADAV+SMVYEASARIRDP+YGC G+I QLQKQ+N+LQ +LAKAQAEV+ MQ QQANL+ L
Sbjct: 173 ADAVSSMVYEASARIRDPVYGCTGAICQLQKQVNELQAQLAKAQAEVVNMQLQQANLVAL 232

Query: 128 ICKELAQMPQPPMYDHQPLNQNYNISSPQSYQTYSYLFEEGNI---LEPLWT 177
           +C E+AQ PQ     HQP+N ++  +SPQSY +     ++ N+    EPLWT
Sbjct: 233 LCMEVAQSPQ--QNPHQPIN-DFLSNSPQSYHSNPSFLDDNNLGSSWEPLWT 281

[Close]
BLAST of Cla005052 vs. TrEMBL
Match: B9SK21_RICCO (LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1399160 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.3e-56
Identity = 116/169 (68.64%), Postives = 134/169 (79.29%), Query Frame = 1 

Query: 13  SPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVN 72
           SPCAACKILRRRC + C L PYFPPTEP KFTIAHRVFGASNIIK LQ+LP+SQRADAV+
Sbjct: 39  SPCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVS 98

Query: 73  SMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTLICKEL 132
           SMVYEASARIRDP+YGCAG+I QLQKQ+N+LQ +LAKAQAEV+ MQCQQANLM LI  E+
Sbjct: 99  SMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLMALIYMEM 158

Query: 133 AQMPQPPMYDHQPLNQNYN--ISSPQSYQTYSYLFEEGNI---LEPLWT 177
           AQ PQ      Q   Q+ +  I++PQSYQ+     +E N+    EPLWT
Sbjct: 159 AQSPQ------QSSEQSIDDFITTPQSYQSNPCFLDESNLGTMWEPLWT 201

[Close]
BLAST of Cla005052 vs. TrEMBL
Match: A0A061GTD1_THECC (LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_041094 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.3e-56
Identity = 114/168 (67.86%), Postives = 134/168 (79.76%), Query Frame = 1 

Query: 13  SPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVN 72
           SPCAACKILRRRC + C L PYFPPTEP KFTIAHRVFGASNIIK LQ+LP+SQRADAV+
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVS 113

Query: 73  SMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTLICKEL 132
           SMVYEASARIRDP+YGCAG+I QLQKQ+N+LQ +LAKAQAEV+ MQ QQANL+ L+C E+
Sbjct: 114 SMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVNMQLQQANLVALLCVEM 173

Query: 133 AQMPQPPMYDHQPLNQNYNISSPQSYQTYSYLFEE----GNILEPLWT 177
           AQ PQP    +   + +  ISSP SYQ+     E+    G++ EPLWT
Sbjct: 174 AQSPQP----NSQQSVDTFISSPPSYQSNPGFLEDNNNLGSLWEPLWT 217

[Close]
BLAST of Cla005052 vs. TrEMBL
Match: A0A067LHN9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05582 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.4e-56
Identity = 111/166 (66.87%), Postives = 132/166 (79.52%), Query Frame = 1 

Query: 11  VGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADA 70
           V SPCAACKILRRRC + C L PYFPPTEP KFTIAHRVFGASNIIK LQ+LP+SQRADA
Sbjct: 43  VVSPCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADA 102

Query: 71  VNSMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTLICK 130
           V+SMVYEASARIRDP+YGCAG+I  LQKQI++LQ +LAKAQAE++ MQCQQANL+ ++C 
Sbjct: 103 VSSMVYEASARIRDPVYGCAGAICHLQKQISELQAQLAKAQAELVNMQCQQANLVAILC- 162

Query: 131 ELAQMPQPPMYDHQPLNQNYNISSPQSYQTYSYLFEEGNILEPLWT 177
              +M Q P    +    N+ IS+PQSYQ+     +E N+ EPLWT
Sbjct: 163 NCMEMAQSPQQSSEQSVDNF-ISTPQSYQSNPCFIDESNLWEPLWT 206

[Close]
BLAST of Cla005052 vs. NCBI nr
Match: gi|449459128|ref|XP_004147298.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 9.0e-79
Identity = 148/178 (83.15%), Postives = 157/178 (88.20%), Query Frame = 1 

Query: 2   EKNEAHTVAV---GSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKL 61
           E N A T  V    SPCAACKILRRRCRENCELGPYFP  EPLKFTIAHRVFGASNIIKL
Sbjct: 6   ETNTASTAVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKL 65

Query: 62  LQDLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQ 121
           LQDLP+SQR DAVNSMVYEASARIRDPIYGCAGSIF LQ+QINDLQGELAKAQAEVL+M 
Sbjct: 66  LQDLPESQRGDAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQGELAKAQAEVLRMH 125

Query: 122 CQQANLMTLICKELAQMPQPPMYDHQPLNQNYNISSPQSYQTYSYLFEEGNILEPLWT 177
           CQQANLMTLI KEL Q+PQPPM+DHQ LN  YNI+SPQSY +YSYLFEE N+LEP+WT
Sbjct: 126 CQQANLMTLIWKELGQVPQPPMHDHQSLNDPYNIASPQSYHSYSYLFEECNVLEPMWT 183

[Close]
BLAST of Cla005052 vs. NCBI nr
Match: gi|659072136|ref|XP_008463578.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 293.1 bits (749), Expect = 3.2e-76
Identity = 148/178 (83.15%), Postives = 156/178 (87.64%), Query Frame = 1 

Query: 2   EKNEAHTVAV-GS--PCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKL 61
           E N A  V V GS  PCAACKILRRRCRENCELGPYFPP EPLKFTIAHRVFGASNIIKL
Sbjct: 6   EANTASAVVVMGSTQPCAACKILRRRCRENCELGPYFPPMEPLKFTIAHRVFGASNIIKL 65

Query: 62  LQDLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQ 121
           LQ+LPKSQRADAVNSMVYEASARIRDPIYGCAGSIF LQ+QINDLQ ELAKAQAEVL+M 
Sbjct: 66  LQNLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQIELAKAQAEVLRMH 125

Query: 122 CQQANLMTLICKELAQMPQPPMYDHQPLNQNYNISSPQSYQTYSYLFEEGNILEPLWT 177
           CQQANLMTLICKEL QMP+PPM+DH      YNI+SPQ Y +YSYLFEE N+LEPLWT
Sbjct: 126 CQQANLMTLICKELGQMPEPPMHDH------YNIASPQGYYSYSYLFEESNVLEPLWT 177

[Close]
BLAST of Cla005052 vs. NCBI nr
Match: gi|659072131|ref|XP_008463550.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 4.1e-63
Identity = 122/172 (70.93%), Postives = 142/172 (82.56%), Query Frame = 1 

Query: 11  VGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADA 70
           V SPCAACKILRRRC E C L PYFPP++PLKFTIAHR+FGASNIIKLL DLP SQRADA
Sbjct: 34  VVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADA 93

Query: 71  VNSMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTLICK 130
           V+S+VYEASARIRDP+YGCAG+I QLQKQIN+LQ ELAK QAE++ + C Q NL+ LICK
Sbjct: 94  VSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICK 153

Query: 131 ELAQMPQPPMY------DHQPLNQNYNISSPQSYQTYSYLFEEGNILEPLWT 177
           ELAQ P PPM       DH+ L+ N+NI++PQSYQ Y+ LFE+ NI +PLWT
Sbjct: 154 ELAQTP-PPMSSLSLLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 204

[Close]
BLAST of Cla005052 vs. NCBI nr
Match: gi|449459130|ref|XP_004147299.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-59
Identity = 119/179 (66.48%), Postives = 144/179 (80.45%), Query Frame = 1 

Query: 5   EAHTVAVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPK 64
           +AH V   +PCAACKILRRRC + C L PYFPP++PLKFTIAHR+FGASNIIKLL DLP 
Sbjct: 33  QAHVVV--TPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPD 92

Query: 65  SQRADAVNSMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQANL 124
           SQRADAV+S+VYEASARIRDP+YGCAG+I QLQKQIN+LQ ELAK QAE++ + C Q NL
Sbjct: 93  SQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNL 152

Query: 125 MTLICKELAQMPQPPMY------DHQPLNQNYNI-SSPQSYQTYSYLFEEGNILEPLWT 177
           + LICKELAQ P PPM       +H+ L+ ++NI ++PQSYQ Y+ LF + NI +PLWT
Sbjct: 153 VALICKELAQTP-PPMSSSSLLPEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 208

[Close]
BLAST of Cla005052 vs. NCBI nr
Match: gi|720090050|ref|XP_010244970.1| (PREDICTED: LOB domain-containing protein 1-like [Nelumbo nucifera])

HSP 1 Score: 237.7 bits (605), Expect = 1.6e-59
Identity = 116/168 (69.05%), Postives = 138/168 (82.14%), Query Frame = 1 

Query: 13  SPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVN 72
           SPCAACKILRRRC E C L PYFPPTEPLKFT AHRVFGASNIIK LQ+LP+SQRADAV+
Sbjct: 40  SPCAACKILRRRCVEKCVLAPYFPPTEPLKFTTAHRVFGASNIIKFLQELPESQRADAVS 99

Query: 73  SMVYEASARIRDPIYGCAGSIFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTLICKEL 132
           SMVYEA+ARIRDP+YGCAG+I QLQKQ+N+LQ +LAKAQAE++ MQCQQANL+ LIC E+
Sbjct: 100 SMVYEANARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAELVNMQCQQANLLALICMEM 159

Query: 133 AQMPQPPMYDHQPLNQNYNISSPQSYQTYSYLFEE----GNILEPLWT 177
           AQ  Q P+   QP + N+ I+SP S+QT + +F +    G+  EPLWT
Sbjct: 160 AQSQQAPLLQQQPFD-NFMITSPHSFQTSNGIFTDDTSLGSTWEPLWT 206

The following BLAST results are available for this feature:
BLAST of Cla005052 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LBD1_ARATH2.6e-4674.14LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1[more]
LBD11_ARATH1.9e-4470.69LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2[more]
LBD4_ARATH5.5e-3643.68LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1[more]
LBD12_ARATH9.4e-3662.96LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2[more]
LBD15_ARATH2.6e-3353.66LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2[more]
BLAST of Cla005052 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUS4_CUCSA6.3e-7983.15Uncharacterized protein OS=Cucumis sativus GN=Csa_1G088440 PE=4 SV=1[more]
A0A0D2LY54_GOSRA4.0e-5767.44Uncharacterized protein OS=Gossypium raimondii GN=B456_001G129700 PE=4 SV=1[more]
B9SK21_RICCO3.3e-5668.64LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1399160 PE=4... [more]
A0A061GTD1_THECC3.3e-5667.86LOB domain-containing protein 1 OS=Theobroma cacao GN=TCM_041094 PE=4 SV=1[more]
A0A067LHN9_JATCU4.4e-5666.87Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05582 PE=4 SV=1[more]
BLAST of Cla005052 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459128|ref|XP_004147298.1|9.0e-7983.15PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus][more]
gi|659072136|ref|XP_008463578.1|3.2e-7683.15PREDICTED: LOB domain-containing protein 1-like [Cucumis melo][more]
gi|659072131|ref|XP_008463550.1|4.1e-6370.93PREDICTED: LOB domain-containing protein 1-like [Cucumis melo][more]
gi|449459130|ref|XP_004147299.1|1.2e-5966.48PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus][more]
gi|720090050|ref|XP_010244970.1|1.6e-5969.05PREDICTED: LOB domain-containing protein 1-like [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU39643watermelon EST collection version 2.0transcribed_cluster
WMU67527watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla005052Cla005052.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU39643WMU39643transcribed_cluster
WMU67527WMU67527transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 14..111
score: 3.1
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 13..114
score: 25
NoneNo IPR availableunknownCoilCoilcoord: 93..120
scor
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 10..170
score: 4.0
NoneNo IPR availablePANTHERPTHR31301:SF14LOB DOMAIN-CONTAINING PROTEIN 1-RELATEDcoord: 10..170
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla005052Cla97C02G046930Watermelon (97103) v2wmwmbB118
Cla005052Cla97C03G053390Watermelon (97103) v2wmwmbB124
Cla005052Csa1G088440Cucumber (Chinese Long) v2cuwmB010
Cla005052MELO3C005013Melon (DHL92) v3.5.1mewmB146
Cla005052ClCG03G002360Watermelon (Charleston Gray)wcgwmB223
Cla005052CSPI01G12870Wild cucumber (PI 183967)cpiwmB012
Cla005052Cucsa.207390Cucumber (Gy14) v1cgywmB407
Cla005052CmaCh13G001950Cucurbita maxima (Rimu)cmawmB185
Cla005052CmaCh01G005340Cucurbita maxima (Rimu)cmawmB429
Cla005052CmoCh13G001960Cucurbita moschata (Rifu)cmowmB173
Cla005052CmoCh01G005640Cucurbita moschata (Rifu)cmowmB422
Cla005052Lsi02G014410Bottle gourd (USVL1VR-Ls)lsiwmB185
Cla005052CsGy1G012950Cucumber (Gy14) v2cgybwmB012
Cla005052MELO3C005013.2Melon (DHL92) v3.6.1medwmB143
Cla005052Carg21071Silver-seed gourdcarwmB0725
Cla005052Carg12308Silver-seed gourdcarwmB0440
Cla005052CsaV3_1G013040Cucumber (Chinese Long) v3cucwmB015
Cla005052Bhi08G000291Wax gourdwgowmB477
Cla005052Bhi08G000253Wax gourdwgowmB482
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla005052Cla000545Watermelon (97103) v1wmwmB086
The following block(s) are covering this gene:
GeneOrganismBlock
Cla005052Melon (DHL92) v3.6.1medwmB092
Cla005052Cucumber (Chinese Long) v3cucwmB507
Cla005052Watermelon (97103) v2wmwmbB123
Cla005052Wax gourdwgowmB366
Cla005052Watermelon (97103) v1wmwmB092
Cla005052Cucurbita maxima (Rimu)cmawmB556
Cla005052Cucurbita moschata (Rifu)cmowmB549
Cla005052Melon (DHL92) v3.5.1mewmB095
Cla005052Watermelon (Charleston Gray)wcgwmB184
Cla005052Cucumber (Chinese Long) v2cuwmB481
Cla005052Cucurbita pepo (Zucchini)cpewmB507
Cla005052Cucurbita pepo (Zucchini)cpewmB548
Cla005052Bottle gourd (USVL1VR-Ls)lsiwmB052