WMU67527 (transcribed_cluster) Watermelon (97103) v1

NameWMU67527
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionLOB domain protein 11
LocationChr3 : 2603954 .. 2604238 (-)
Sequence length290
The following sequences are available for this feature:

transcribed_cluster sequence

CCCGTCCTCCCCGCCACTCTCTCCGGCTAAAATGGAAGAAAAATGAGGCACATACGGTGGCGGTGGGTAGTCCGTGTGCGGCTTGTAAAATTCTCCGGCGAAGATGCCGAGAGAATTGCGAATTGGGGCCGTATTTTCCTCCAACGGAACCTCTCAAATTCACTATTGCTCATAGGGTCTTCGGTGCTAGCAACATCATCAAATTGCTTCAGGTAATTTCTCTTTGTTTGGTAACGGTTTTGTTTCTAGCTGATTACTGGATATAAACCTTTCCTTTAGATTCAATTAAA
BLAST of WMU67527 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1)

HSP 1 Score: 91.3 bits (225), Expect = 3.6e-19
Identity = 41/48 (85.42%), Postives = 40/48 (83.33%), Query Frame = 3

Query: 69  SPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQ 128
           SPCAACKILRRRC E C L PYFPPT+P KFTIAHRVFGASNIIK LQ
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 79

Query: 129 188
           
Sbjct: 92  79

Query: 189 213
           
Sbjct: 152 79

BLAST of WMU67527 vs. TAIR10
Match: AT2G28500.1 (AT2G28500.1 LOB domain-containing protein 11)

HSP 1 Score: 90.1 bits (222), Expect = 7.9e-19
Identity = 40/48 (83.33%), Postives = 40/48 (83.33%), Query Frame = 3

Query: 69  SPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQ 128
           SPCAACKILRRRC + C L PYFPPT+P KFTIAHRVFGASNIIK LQ
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 101

Query: 129 188
           
Sbjct: 114 101

Query: 189 213
           
Sbjct: 174 101

BLAST of WMU67527 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 76.6 bits (187), Expect = 9.1e-15
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 3

Query: 39  KNEAHTVAVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQVI 98
           K  +      SPCAACK+LRRRC ++C   PYFP  EP KF   HRVFGASN+ K+LQ +
Sbjct: 2   KESSRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQEL 61

Query: 99  SL 158
            +
Sbjct: 62  PI 63

Query: 159 218
           
Sbjct: 122 63

Query: 219 225
           
Sbjct: 182 63

BLAST of WMU67527 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 76.6 bits (187), Expect = 9.1e-15
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 3

Query: 69  SPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQ 128
           SPCA+CK+LRRRC ++C   PYFPP +P KF I H+VFGASN+ K+LQ
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQ 54

Query: 129 188
           
Sbjct: 67  54

Query: 189 213
           
Sbjct: 127 54

BLAST of WMU67527 vs. TAIR10
Match: AT2G23660.1 (AT2G23660.1 LOB domain-containing protein 10)

HSP 1 Score: 75.5 bits (184), Expect = 2.0e-14
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 3

Query: 69  SPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLL 128
           +PCAACK+LRR+C + C   PYFPPT P KF   HRVFGASN+ K+L
Sbjct: 4   TPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKIL 50

Query: 129 188
           
Sbjct: 64  50

Query: 189 210
           
Sbjct: 124 50

BLAST of WMU67527 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.3e-18
Identity = 41/48 (85.42%), Postives = 40/48 (83.33%), Query Frame = 3

Query: 69  SPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQ 128
           SPCAACKILRRRC E C L PYFPPT+P KFTIAHRVFGASNIIK LQ
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 79

Query: 129 188
           
Sbjct: 92  79

Query: 189 213
           
Sbjct: 152 79

BLAST of WMU67527 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-17
Identity = 40/48 (83.33%), Postives = 40/48 (83.33%), Query Frame = 3

Query: 69  SPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQ 128
           SPCAACKILRRRC + C L PYFPPT+P KFTIAHRVFGASNIIK LQ
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 101

Query: 129 188
           
Sbjct: 114 101

Query: 189 213
           
Sbjct: 174 101

BLAST of WMU67527 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-13
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 3

Query: 69  SPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQ 128
           SPCA+CK+LRRRC ++C   PYFPP +P KF I H+VFGASN+ K+LQ
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQ 54

Query: 129 188
           
Sbjct: 67  54

Query: 189 213
           
Sbjct: 127 54

BLAST of WMU67527 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-13
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 3

Query: 39  KNEAHTVAVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQVI 98
           K  +      SPCAACK+LRRRC ++C   PYFP  EP KF   HRVFGASN+ K+LQ +
Sbjct: 2   KESSRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQEL 61

Query: 99  SL 158
            +
Sbjct: 62  PI 63

Query: 159 218
           
Sbjct: 122 63

Query: 219 225
           
Sbjct: 182 63

BLAST of WMU67527 vs. Swiss-Prot
Match: LBD6_ORYSJ (LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-13
Identity = 35/56 (62.50%), Postives = 38/56 (67.86%), Query Frame = 3

Query: 48  AHTVA--VGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLL 107
           A+T A   GSPCAACK LRR+C+ +C   PYFPP  P KF   HRVFGASN+ KLL
Sbjct: 28  ANTAACGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLL 83

Query: 108 167
           
Sbjct: 88  83

Query: 168 210
           
Sbjct: 148 83

BLAST of WMU67527 vs. NCBI nr
Match: gi|659072136|ref|XP_008463578.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-20
Identity = 53/65 (81.54%), Postives = 55/65 (84.62%), Query Frame = 3

Query: 36  KKNEAHT----VAVGS--PCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNI 95
           K  EA+T    V +GS  PCAACKILRRRCRENCELGPYFPP EPLKFTIAHRVFGASNI
Sbjct: 3   KSEEANTASAVVVMGSTQPCAACKILRRRCRENCELGPYFPPMEPLKFTIAHRVFGASNI 62

Query: 96  IKLLQ 155
           IKLLQ
Sbjct: 63  IKLLQ 67

Query: 156 213
           
Sbjct: 123 67

BLAST of WMU67527 vs. NCBI nr
Match: gi|449459128|ref|XP_004147298.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 2.0e-19
Identity = 48/55 (87.27%), Postives = 48/55 (87.27%), Query Frame = 3

Query: 48  AHTVAVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQ 107
           A  V   SPCAACKILRRRCRENCELGPYFP  EPLKFTIAHRVFGASNIIKLLQ
Sbjct: 13  AVVVGSSSPCAACKILRRRCRENCELGPYFPSMEPLKFTIAHRVFGASNIIKLLQ 67

Query: 108 167
           
Sbjct: 73  67

Query: 168 213
           
Sbjct: 133 67

BLAST of WMU67527 vs. NCBI nr
Match: gi|695047706|ref|XP_009411741.1| (PREDICTED: LOB domain-containing protein 1-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 101.3 bits (251), Expect = 9.7e-19
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 3

Query: 54  TVAVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQ 113
           TV + SPCAACKILRRRC +NC L PYFPPTEPLKFT AHRVFGASNIIKLLQ
Sbjct: 35  TVVIHSPCAACKILRRRCADNCVLAPYFPPTEPLKFTTAHRVFGASNIIKLLQ 87

Query: 114 173
           
Sbjct: 95  87

Query: 174 213
           
Sbjct: 155 87

BLAST of WMU67527 vs. NCBI nr
Match: gi|1021039579|gb|KZM97360.1| (hypothetical protein DCAR_015278 [Daucus carota subsp. sativus])

HSP 1 Score: 100.1 bits (248), Expect = 2.2e-18
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 3

Query: 54  TVAVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQ 113
           T AV SPCAACKILRRRC E C L PYFPPT+PLKFTIAHRVFGASNIIKLLQ
Sbjct: 48  TAAVMSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKLLQ 100

Query: 114 173
           
Sbjct: 108 100

Query: 174 213
           
Sbjct: 168 100

BLAST of WMU67527 vs. NCBI nr
Match: gi|604335663|gb|EYU39551.1| (hypothetical protein MIMGU_mgv1a019423mg [Erythranthe guttata])

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-18
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 3

Query: 48  AHTVAVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQ 107
           +HTV + SPCAACKILRRRC E C L PYFPPTEPLKFTIAHRVFGASNIIKLLQ
Sbjct: 45  SHTVIL-SPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQ 98

Query: 108 167
           
Sbjct: 105 98

Query: 168 213
           
Sbjct: 165 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT1G07900.13.6e-1985.42 LOB domain-containing protein 1[more]
AT2G28500.17.9e-1983.33 LOB domain-containing protein 11[more]
AT1G31320.19.1e-1553.23 LOB domain-containing protein 4[more]
AT2G30130.19.1e-1564.58 Lateral organ boundaries (LOB) domain family protein[more]
AT2G23660.12.0e-1463.83 LOB domain-containing protein 10[more]
Match NameE-valueIdentityDescription
LBD1_ARATH6.3e-1885.42LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1[more]
LBD11_ARATH1.4e-1783.33LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2[more]
LBD12_ARATH1.6e-1364.58LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2[more]
LBD4_ARATH1.6e-1353.23LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1[more]
LBD6_ORYSJ2.1e-1362.50LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=... [more]
Match NameE-valueIdentityDescription
gi|659072136|ref|XP_008463578.1|2.3e-2081.54PREDICTED: LOB domain-containing protein 1-like [Cucumis melo][more]
gi|449459128|ref|XP_004147298.1|2.0e-1987.27PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus][more]
gi|695047706|ref|XP_009411741.1|9.7e-1984.91PREDICTED: LOB domain-containing protein 1-like [Musa acuminata subsp. malaccens... [more]
gi|1021039579|gb|KZM97360.1|2.2e-1886.79hypothetical protein DCAR_015278 [Daucus carota subsp. sativus][more]
gi|604335663|gb|EYU39551.1|3.7e-1885.45hypothetical protein MIMGU_mgv1a019423mg [Erythranthe guttata][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla005052Cla005052gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0166712S2_0166712EST